Miyakogusa Predicted Gene
- Lj5g3v0238160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0238160.1 Non Characterized Hit- tr|I1MY40|I1MY40_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,65.4,0,seg,NULL;
Conserved domain common to transcription factors TFIIS, elongin A,
CRSP70,Transcription fa,CUFF.52669.1
(998 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g025500.1 | transcription elongation factor (TFIIS) family... 512 e-145
Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain p... 63 1e-09
Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain p... 63 1e-09
>Medtr1g025500.1 | transcription elongation factor (TFIIS) family
protein, putative | HC | chr1:8163279-8157128 | 20130731
Length = 1020
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 284/493 (57%), Positives = 343/493 (69%), Gaps = 56/493 (11%)
Query: 1 MTLEDFFTLTEMKDGLTASSRVQELITVMKKEQDCVVKNAGDAIRQWAAVASTIAATQNK 60
MTLEDFFTLTEMKDGLT SRVQEL++VMKKEQD +VKN GDAIRQWAAVASTIAAT+NK
Sbjct: 1 MTLEDFFTLTEMKDGLTTPSRVQELVSVMKKEQDSIVKNTGDAIRQWAAVASTIAATENK 60
Query: 61 DCLDLFIRLDGVWYINRWLNDAQNFVVDEHEGLLEESITAMLRAVEKLYQDCEMSISSEI 120
DCLDLFI+LDG W+I+RWLNDAQ ++ ++EESITAMLRAVEKLYQD E ISS +
Sbjct: 61 DCLDLFIQLDGPWFIDRWLNDAQKLGGGTNDSVMEESITAMLRAVEKLYQDSEKLISSGM 120
Query: 121 RVTVSNLLGHQSSKVQDRARVLFSNWKEGGNGDTESHETDICKMNNVNDKIGWEEVQLSS 180
TVSNLLGH SSKVQDRAR LF WKE GNGD +SH+ D + N++ DK EE QLSS
Sbjct: 121 WATVSNLLGHHSSKVQDRARALFDKWKEVGNGDAKSHDMDTGQRNHMIDKNLKEEGQLSS 180
Query: 181 VKEANNDDDKAAQLVGGEKSQLRSSDSQLQEKVASVQIQSSDDALQSSVSLGCEDAKERS 240
V A+ND+ +L GGEKS LRSSD+Q+ +K A+V+ +SSD+A QSS SL CE+ KERS
Sbjct: 181 VSGASNDNVHVLRLEGGEKSVLRSSDTQIPDKAANVKKESSDNAHQSSASLNCEELKERS 240
Query: 241 NHLASVSASNQQVTPMSEAEMTSSGTCNLPVPKQGSCEGQPDDLQINNVCKKEKQNQTDN 300
NHL +V S Q+ SE+E+TSSG CNLPVPKQGS + QPDDLQ+N++ KE+Q DN
Sbjct: 241 NHLTTVLTSVQESASASESELTSSGICNLPVPKQGSFKDQPDDLQLNDLSMKEEQELNDN 300
Query: 301 GPPEKLGTPDISLAPINPETVPVSIGANE-------APIKPESGSEH-VEGNDDGVCHKI 352
GPPEKLG APINP+ VS+GA+E API PES EH V+ ++ G+C K+
Sbjct: 301 GPPEKLG------APINPKPESVSVGASEAQVKPVPAPIVPESSLEHDVKSSEVGICDKV 354
Query: 353 IVSGSMRTPAPDSMR---DTSAINSDNPQLTRSSENSDGCCSDTLQDLSISGIKLEKAEV 409
IVSGSM+TPA D M A +S NPQL+++S
Sbjct: 355 IVSGSMKTPASDKMSVVDGARATDSSNPQLSKAS-------------------------- 388
Query: 410 KMSILETEHGSAVKEEGKGQFSNQDDKTSNGSDSFKRWKATRSP-LVDKISDIELEYGTV 468
++EEG Q SN D TSNGSDSFK+ K SP ++DK SD+EL+YG V
Sbjct: 389 ------------MEEEGNSQVSNHVDDTSNGSDSFKQRKDPTSPNIIDKSSDMELDYGIV 436
Query: 469 DALEFARQVAQEV 481
DAL+ ARQVA+EV
Sbjct: 437 DALDVARQVAEEV 449
>Medtr6g007787.1 | BAH domain; TFIIS helical bundle-like domain
protein, putative | HC | chr6:1984298-1978119 | 20130731
Length = 1589
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 1 MTLEDFFTLTEMKDGLTASSRVQELITVMKKEQ-DCVVKNAGDAIRQWAAVASTIAATQN 59
M + +TE K GL V++ + +M+ + D + AG + + I+ T++
Sbjct: 254 MLRTEIARITE-KGGLVDFEGVEKFVQLMQPDSADKKIDLAGRTM-----LVDVISLTEH 307
Query: 60 KDCLDLFIRLDGVWYINRWLNDAQNFVV-DEHEGLLEESITAMLRAVEKLYQDCEMSISS 118
DCL F++L G+ ++ WL + + D + EE + A+LRA++KL + +
Sbjct: 308 YDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDKLPVNLHALQTC 367
Query: 119 EIRVTVSNLLGHQSSKVQDRARVLFSNWKE 148
+ +V+NL H++S++Q +AR L WK+
Sbjct: 368 NVGKSVNNLRSHKNSEIQRKARSLVDTWKK 397
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 599 APISVVSASKPAQTSGLLTAPLQFEGTLGGWKGSAATSAFRPASPRKKSDSEKNVSVGGG 658
A I+V SA+K L PL+ +G LG WKGSAATSAFRPA PRK ++ N
Sbjct: 1174 ASITVASATKGPVV--LPENPLRSKGELG-WKGSAATSAFRPAEPRKNAEMPSNTGDIPS 1230
Query: 659 TDIS--KQRQVCLDIDLNVAE 677
+ + KQ + LD DLNVA+
Sbjct: 1231 VETTSVKQGRAPLDFDLNVAD 1251
>Medtr6g007787.2 | BAH domain; TFIIS helical bundle-like domain
protein, putative | HC | chr6:1984298-1978119 | 20130731
Length = 1589
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 8/150 (5%)
Query: 1 MTLEDFFTLTEMKDGLTASSRVQELITVMKKEQ-DCVVKNAGDAIRQWAAVASTIAATQN 59
M + +TE K GL V++ + +M+ + D + AG + + I+ T++
Sbjct: 254 MLRTEIARITE-KGGLVDFEGVEKFVQLMQPDSADKKIDLAGRTM-----LVDVISLTEH 307
Query: 60 KDCLDLFIRLDGVWYINRWLNDAQNFVV-DEHEGLLEESITAMLRAVEKLYQDCEMSISS 118
DCL F++L G+ ++ WL + + D + EE + A+LRA++KL + +
Sbjct: 308 YDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNVDKSEEFLLALLRALDKLPVNLHALQTC 367
Query: 119 EIRVTVSNLLGHQSSKVQDRARVLFSNWKE 148
+ +V+NL H++S++Q +AR L WK+
Sbjct: 368 NVGKSVNNLRSHKNSEIQRKARSLVDTWKK 397
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 599 APISVVSASKPAQTSGLLTAPLQFEGTLGGWKGSAATSAFRPASPRKKSDSEKNVSVGGG 658
A I+V SA+K L PL+ +G LG WKGSAATSAFRPA PRK ++ N
Sbjct: 1174 ASITVASATKGPVV--LPENPLRSKGELG-WKGSAATSAFRPAEPRKNAEMPSNTGDIPS 1230
Query: 659 TDIS--KQRQVCLDIDLNVAE 677
+ + KQ + LD DLNVA+
Sbjct: 1231 VETTSVKQGRAPLDFDLNVAD 1251