Miyakogusa Predicted Gene
- Lj5g3v0198050.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0198050.1 tr|F4I0N7|F4I0N7_ARATH Gibberellin-regulated
protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=4
SV=1,60.53,4e-19,GASA,Gibberellin regulated protein;
seg,NULL,CUFF.52641.1
(108 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g113890.1 | gibberellin-regulated family protein | HC | ch... 107 2e-24
Medtr1g025220.1 | GASA/GAST/Snakin | HC | chr1:8036000-8034809 |... 105 1e-23
Medtr1g025250.1 | GASA/GAST/Snakin | HC | chr1:8043284-8042165 |... 89 1e-18
Medtr8g075920.1 | gibberellin-regulated family protein | HC | ch... 87 4e-18
Medtr4g106860.1 | gibberellin-regulated family protein | HC | ch... 84 3e-17
Medtr8g062800.1 | gibberellin-regulated family protein | HC | ch... 80 4e-16
Medtr6g007897.1 | gibberellin-regulated family protein | HC | ch... 76 6e-15
Medtr1g096370.1 | Thionin related | HC | chr1:43398389-43400025 ... 75 1e-14
Medtr5g036880.1 | Thionin related | HC | chr5:16099765-16100343 ... 70 4e-13
Medtr5g036720.1 | Thionin related | HC | chr5:16046544-16047137 ... 69 1e-12
Medtr3g102660.1 | GASA/GAST/Snakin | HC | chr3:47312866-47311376... 66 6e-12
Medtr6g007913.1 | GASA/GAST/Snakin | HC | chr6:2139621-2140861 |... 59 7e-10
Medtr5g036640.1 | GASA/GAST/Snakin | HC | chr5:16006505-16005811... 59 1e-09
Medtr5g036860.1 | Thionin related | HC | chr5:16094808-16095353 ... 59 1e-09
Medtr1g106915.1 | gibberellin-regulated family protein | HC | ch... 57 4e-09
Medtr6g007917.1 | GASA/GAST/Snakin | HC | chr6:2144954-2147100 |... 57 5e-09
Medtr7g010580.1 | gibberellin-regulated family protein | HC | ch... 57 5e-09
Medtr3g113850.1 | gibberellin-regulated family protein | HC | ch... 55 1e-08
Medtr6g012360.1 | gibberellin-regulated family protein | HC | ch... 53 8e-08
Medtr5g095990.1 | GASA/GAST/Snakin | HC | chr5:41969296-41967991... 52 1e-07
Medtr0254s0070.1 | gibberellin-regulated family protein | LC | s... 52 1e-07
Medtr8g085470.1 | gibberellin-regulated family protein | LC | ch... 52 1e-07
Medtr3g007900.1 | GASA/GAST/Snakin | HC | chr3:1236356-1234999 |... 52 1e-07
Medtr7g090590.1 | GASA/GAST/Snakin | HC | chr7:35650637-35649513... 52 1e-07
Medtr3g037750.1 | gibberellin-regulated family protein | HC | ch... 48 2e-06
>Medtr3g113890.1 | gibberellin-regulated family protein | HC |
chr3:53117270-53116018 | 20130731
Length = 103
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/108 (50%), Positives = 65/108 (60%), Gaps = 5/108 (4%)
Query: 1 MAISKTLFAPILISLILLHLVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCKL 60
MA+ K L +L++ + LHLV + E +DC AC RC+L
Sbjct: 1 MALFKLLVTSLLVTFVTLHLVHALDH-----PEPQVHAETQVSLQQQIDCNGACAARCRL 55
Query: 61 SSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
SSRP+LC RACGTCC RCNCVP GT G+ E C CYAN TTHGGRRKCP
Sbjct: 56 SSRPHLCHRACGTCCSRCNCVPPGTSGNQEMCPCYANQTTHGGRRKCP 103
>Medtr1g025220.1 | GASA/GAST/Snakin | HC | chr1:8036000-8034809 |
20130731
Length = 101
Score = 105 bits (261), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 1 MAISKTLFAPILISLILLH-LVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCK 59
MAISK L A +L S +L H LV++ + + +DC AC RC+
Sbjct: 1 MAISKLLVASLLASFLLFHHLVDATDQSAYAQTQGSLLQQ--------IDCDGACVARCR 52
Query: 60 LSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
LSSRPNLC+RACGTCC RCNCVP GT G+ E+C CYA+ TT GG+ KCP
Sbjct: 53 LSSRPNLCQRACGTCCRRCNCVPPGTSGNKEKCPCYASQTTRGGKPKCP 101
>Medtr1g025250.1 | GASA/GAST/Snakin | HC | chr1:8043284-8042165 |
20130731
Length = 100
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 47/61 (77%)
Query: 48 MDCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKC 107
+DC AC RC+LSSRP LC RACGTCC RCNCVP GT G+ E+C CYA+ TT GG+ KC
Sbjct: 40 IDCNGACVARCRLSSRPKLCHRACGTCCRRCNCVPPGTAGNQEKCPCYASQTTRGGKPKC 99
Query: 108 P 108
P
Sbjct: 100 P 100
>Medtr8g075920.1 | gibberellin-regulated family protein | HC |
chr8:32110372-32113123 | 20130731
Length = 103
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 18 LHLVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCKLSSRPNLCKRACGTCCER 77
H+VE++ M N +DCG AC RC LSSRPNLCKRACG+CC
Sbjct: 19 FHMVEAHQLMSN------FGATSPSPLPQTIDCGDACKGRCLLSSRPNLCKRACGSCCAV 72
Query: 78 CNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
C CVP GT G+++ C CYA +TT RKCP
Sbjct: 73 CKCVPPGTAGNFDSCECYAKLTTRNQVRKCP 103
>Medtr4g106860.1 | gibberellin-regulated family protein | HC |
chr4:44105867-44104817 | 20130731
Length = 115
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Query: 48 MDCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEEC-ACYANMTTHGGRRK 106
+DCG C RC + SRPNLCKRACGTCC RC CVP GT G+ E C ACY +MTTHG + K
Sbjct: 54 IDCGGLCRSRCSVHSRPNLCKRACGTCCVRCKCVPPGTAGNREFCGACYTDMTTHGNKTK 113
Query: 107 CP 108
CP
Sbjct: 114 CP 115
>Medtr8g062800.1 | gibberellin-regulated family protein | HC |
chr8:26266919-26268062 | 20130731
Length = 112
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 7 LFAPILISLILLHLVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCKLSSRPNL 66
L +L + + +S+ + + +DCG+ C+ RC + SRPN+
Sbjct: 10 LMVALLFCMTKVLCADSSVHIQDQFTHFEVVKGPNRRLLAFVDCGTRCNVRCSVHSRPNV 69
Query: 67 CKRACGTCCERCNCVPSGTYGHYEECA-CYANMTTHGGRRKCP 108
C RACGTCC RC CVP GTYG+ E C CY +M T G + KCP
Sbjct: 70 CMRACGTCCLRCKCVPPGTYGNREMCGRCYTDMITRGNKPKCP 112
>Medtr6g007897.1 | gibberellin-regulated family protein | HC |
chr6:2123510-2126214 | 20130731
Length = 248
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEEC-ACYANMTTHGGRRKC 107
DC C RC+ SR N C RAC TCC+RC CVP GTYG+ E+C CY +M THG R KC
Sbjct: 188 DCIPLCGYRCQKHSRQNTCIRACMTCCDRCKCVPPGTYGNREKCGKCYTDMVTHGNRPKC 247
Query: 108 P 108
P
Sbjct: 248 P 248
>Medtr1g096370.1 | Thionin related | HC | chr1:43398389-43400025 |
20130731
Length = 95
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 13/108 (12%)
Query: 1 MAISKTLFAPILISLILLHLVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCKL 60
M +K +L+ IL+ +E + GN + +DC C RC
Sbjct: 1 MVFTKNTLILVLLCFILIQELEIYS--GNQHIVAAQ-----------IDCNGKCGYRCSK 47
Query: 61 SSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+SR +C RAC +CC +CNCVP GT G+ + C CYA++ THGG+ KCP
Sbjct: 48 ASRQKICMRACTSCCRKCNCVPPGTSGNSDMCPCYASLKTHGGKLKCP 95
>Medtr5g036880.1 | Thionin related | HC | chr5:16099765-16100343 |
20130731
Length = 92
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+C +ACD RC + C C CC +C CVPSGTYGH EEC CYAN+ TH G KCP
Sbjct: 33 ECSAACDVRCSATMYKKACLTYCNYCCAKCLCVPSGTYGHKEECPCYANLKTHEGGPKCP 92
>Medtr5g036720.1 | Thionin related | HC | chr5:16046544-16047137 |
20130731
Length = 92
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 36/60 (60%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
DC ACD RC + C C CC +C CVPSGTYGH EEC CYANM T G KCP
Sbjct: 33 DCAGACDVRCSATMYKKACLTYCNYCCAKCLCVPSGTYGHKEECPCYANMRTKRGGPKCP 92
>Medtr3g102660.1 | GASA/GAST/Snakin | HC | chr3:47312866-47311376 |
20130731
Length = 85
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 50 CGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
C S C RC +S + C + CG CCE+CNCVPSGTYG+ +EC CY +M G+ KCP
Sbjct: 27 CNSKCAVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGKGKCP 85
>Medtr6g007913.1 | GASA/GAST/Snakin | HC | chr6:2139621-2140861 |
20130731
Length = 138
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVP-SGTYGHYEECA-CYANMTTHGGRRK 106
DC C RCKL R +C AC TCC+RC CVP TYG+ ++C CY +M TH + K
Sbjct: 77 DCIPLCIYRCKLHLRKMVCITACMTCCDRCKCVPLDQTYGNRDKCGKCYTDMLTHHDKVK 136
Query: 107 CP 108
CP
Sbjct: 137 CP 138
>Medtr5g036640.1 | GASA/GAST/Snakin | HC | chr5:16006505-16005811 |
20130731
Length = 83
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 34/61 (55%)
Query: 48 MDCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKC 107
++C CD RC +S C C CC +C CVPSGTYG+ +EC CY N G KC
Sbjct: 23 VNCAPKCDYRCSKTSHRKACLTYCNLCCAKCLCVPSGTYGNKQECPCYDNWRNKNGGPKC 82
Query: 108 P 108
P
Sbjct: 83 P 83
>Medtr5g036860.1 | Thionin related | HC | chr5:16094808-16095353 |
20130731
Length = 92
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 33/60 (55%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+C CD RC ++ C C CC +C CVPSGTYG+ EEC CY N G KCP
Sbjct: 33 ECAPKCDYRCSKTAYKKACLTYCNLCCAKCLCVPSGTYGNKEECPCYNNWKNKKGGPKCP 92
>Medtr1g106915.1 | gibberellin-regulated family protein | HC |
chr1:48402045-48402972 | 20130731
Length = 90
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+C S C +RC + + C + C CC C CVPSGTYG+ EC CY + + G+ KCP
Sbjct: 31 NCSSKCSDRCSKAGVQDRCVKYCEICCNECKCVPSGTYGNKHECPCYRDKVNNKGKPKCP 90
>Medtr6g007917.1 | GASA/GAST/Snakin | HC | chr6:2144954-2147100 |
20130731
Length = 158
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECA-CYANMTTHGGRRKC 107
DC C RCKL R C C TCC+RC CVP GTYG+ E+C CY +M T C
Sbjct: 98 DCIPLCYVRCKLHLRKVECMTQCMTCCDRCQCVPPGTYGNREKCGKCYTDMRTFLDEIMC 157
Query: 108 P 108
P
Sbjct: 158 P 158
>Medtr7g010580.1 | gibberellin-regulated family protein | HC |
chr7:2636906-2638623 | 20130731
Length = 109
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
Query: 1 MAISKTLFAPILISLILLHLVESNARMGNTMVEXXXXXXXXXXXXXI--MDCGSACDERC 58
MA++K FA ++++LI + ++++ GN + C S C RC
Sbjct: 1 MAMTK-FFASLILALIAISMLQTLVMAGNDQGGHLYDNKSQYGPGSLKSYQCPSQCSRRC 59
Query: 59 KLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+ C C CC +C CVP G YG+ C CY N T G KCP
Sbjct: 60 GQTQYHKPCMFFCQKCCRKCLCVPPGYYGNKAVCPCYNNWKTQQGGPKCP 109
>Medtr3g113850.1 | gibberellin-regulated family protein | HC |
chr3:53105270-53103170 | 20130731
Length = 452
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 30/44 (68%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEEC 92
+C AC RC LSSR L RACGTCC RCNCVP GT G+ E C
Sbjct: 406 NCNGACAARCCLSSRQRLGHRACGTCCSRCNCVPLGTSGNQEMC 449
>Medtr6g012360.1 | gibberellin-regulated family protein | HC |
chr6:3726780-3730101 | 20130731
Length = 107
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 1 MAISKTLFAPILISLILLHLVESNARMGNTMVEXXXXXXXXXXXXXIMDCGSACDERCKL 60
MA +F +LI++ +L V A G+ C S C RCK
Sbjct: 1 MARLVVVFILVLIAISMLQTVVM-ASHGHGGHHYNDKKKYGPGSLKSYQCPSQCSRRCKN 59
Query: 61 SSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+ C C CC +C CVP G YG+ C CY N T G KCP
Sbjct: 60 TQYHKPCMFFCQKCCNKCLCVPPGYYGNKAVCPCYNNWKTQQGGPKCP 107
>Medtr5g095990.1 | GASA/GAST/Snakin | HC | chr5:41969296-41967991 |
20130731
Length = 149
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+C C++RC + C C CC +C CVP GTYG+ E C CY + T G KCP
Sbjct: 90 ECAPRCEDRCSKTHHKKPCLFYCKYCCAKCLCVPPGTYGNKEVCPCYNDWKTKEGGPKCP 149
>Medtr0254s0070.1 | gibberellin-regulated family protein | LC |
scaffold0254:22256-23564 | 20130731
Length = 164
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVP-SGTYGHYEECA-CYANMTTHGGRRK 106
DC C RCKL R +C AC TCC+RC CVP TYG+ E+C CY +M T
Sbjct: 103 DCIPLCGYRCKLHLRKMVCITACMTCCDRCKCVPLDQTYGNREKCGKCYTDMRTFLDEIM 162
Query: 107 CP 108
CP
Sbjct: 163 CP 164
>Medtr8g085470.1 | gibberellin-regulated family protein | LC |
chr8:35408296-35408994 | 20130731
Length = 95
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 37/60 (61%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+CG ACD RC +S C C CC +C CVPSGTYG+ +EC CY N T G+ KCP
Sbjct: 36 ECGHACDHRCSKTSHKKPCLFFCKKCCAKCLCVPSGTYGNKQECPCYNNWKTKEGKPKCP 95
>Medtr3g007900.1 | GASA/GAST/Snakin | HC | chr3:1236356-1234999 |
20130731
Length = 154
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
+C C++RC + C C CC +C CVP GTYG+ E C CY + T G KCP
Sbjct: 95 ECAPRCEDRCSKTHHRKPCLFYCKYCCAKCLCVPPGTYGNKEVCPCYNDWKTKEGGPKCP 154
>Medtr7g090590.1 | GASA/GAST/Snakin | HC | chr7:35650637-35649513 |
20130731
Length = 120
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%)
Query: 48 MDCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKC 107
+CG C RC + C C CC +C CVP G YG+ + C CY N T G KC
Sbjct: 60 QECGPRCTNRCSNTQYKKPCLFFCNKCCAKCLCVPPGYYGNKQVCPCYNNWKTKRGGPKC 119
Query: 108 P 108
P
Sbjct: 120 P 120
>Medtr3g037750.1 | gibberellin-regulated family protein | HC |
chr3:13880602-13878449 | 20130731
Length = 103
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 28/60 (46%)
Query: 49 DCGSACDERCKLSSRPNLCKRACGTCCERCNCVPSGTYGHYEECACYANMTTHGGRRKCP 108
C S C RC + C C CC +C CVP G YG+ C CY N T G KCP
Sbjct: 44 QCPSQCTRRCGQTQYHKPCMFFCQKCCAKCLCVPPGYYGNKSVCPCYNNWKTKRGGPKCP 103