Miyakogusa Predicted Gene

Lj5g3v0196840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0196840.1 Non Characterized Hit- tr|B9S1E4|B9S1E4_RICCO
Auxin response factor, putative OS=Ricinus communis GN,51.72,2e-18,
,BW633246.path2.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101360.1 | auxin response factor 2 | HC | chr8:42569517-4...   122   6e-29

>Medtr8g101360.1 | auxin response factor 2 | HC |
           chr8:42569517-42563540 | 20130731
          Length = 1096

 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 81/116 (69%), Gaps = 7/116 (6%)

Query: 2   LGDDMAQSAATILSSSALETVSSNANLLKDLHPHSEVKASLNISKNQNQGNFVSQTYLNS 61
           +GDD+AQSA TILS S      SNAN++K   P+ +VK  LNIS+N N  NF  QT LN 
Sbjct: 771 IGDDVAQSAVTILSQS------SNANVVKYAQPNYDVKPCLNISENHNPVNFYPQTCLNG 824

Query: 62  GAAPTDCLDTSSS-TSVCLSQNDVHMHQINNPLSYNPQSMFFRDNSRDGEVQADGR 116
            A  TDCLDTSSS TSVCLSQ+D   HQ + P+SY PQSMF RDN ++ EVQAD R
Sbjct: 825 AAIQTDCLDTSSSTTSVCLSQSDSRFHQTDRPVSYYPQSMFSRDNIQNVEVQADAR 880