Miyakogusa Predicted Gene

Lj5g3v0186710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0186710.1 Non Characterized Hit- tr|I3SGY5|I3SGY5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,SNARE-like,Longin-like domain; CLATHRIN COAT ASSEMBLY
PROTEIN AP17,NULL; CLATHRIN COAT ASSEMBLY PROT,CUFF.52634.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g025190.1 | clathrin adaptor complex small chain | HC | ch...   277   2e-75
Medtr5g098940.1 | clathrin adaptor complex small chain | HC | ch...   167   2e-42
Medtr5g087820.1 | clathrin adaptor complex small chain | HC | ch...   153   4e-38
Medtr8g102180.1 | AP-1 complex subunit sigma-like protein | HC |...   128   2e-30
Medtr7g100010.1 | AP-1 complex subunit sigma-like protein | HC |...   128   2e-30
Medtr7g100010.2 | AP-1 complex subunit sigma-like protein | HC |...   128   2e-30
Medtr8g077600.1 | AP-1 complex subunit sigma-like protein | HC |...   100   3e-22
Medtr8g077600.2 | AP-1 complex subunit sigma-like protein | HC |...    49   1e-06

>Medtr1g025190.1 | clathrin adaptor complex small chain | HC |
           chr1:8026304-8024026 | 20130731
          Length = 142

 Score =  277 bits (708), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/136 (99%), Positives = 136/136 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHK+IYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKKAIIERMG 136
           GELQETSKKAIIERMG
Sbjct: 121 GELQETSKKAIIERMG 136


>Medtr5g098940.1 | clathrin adaptor complex small chain | HC |
           chr5:43316302-43313470 | 20130731
          Length = 161

 Score =  167 bits (423), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 99/131 (75%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           MI F+LL +RQGK RL K+Y P    E+ KV  E+  ++++R PK  NFVE+R HK++Y+
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILSRAPKLCNFVEWRGHKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C+D  DNEL  LE IH FVEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDDADNELEVLEMIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120

Query: 121 GELQETSKKAI 131
           GELQE+SKK +
Sbjct: 121 GELQESSKKTV 131


>Medtr5g087820.1 | clathrin adaptor complex small chain | HC |
           chr5:38090612-38094429 | 20130731
          Length = 185

 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 70/132 (53%), Positives = 94/132 (71%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60
           +I F+LL +RQGK RL K+Y P    E+ KV  E+  L+++R PK  NFVE+R  +++Y+
Sbjct: 25  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGLIISRGPKLCNFVEWRGLRVVYK 84

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F +C D  DNEL  L  IH +VE LD +F +VCELDL+FNFHK Y ILDE +LA
Sbjct: 85  RYASLYFCICNDQEDNELETLSIIHHYVETLDRYFGSVCELDLIFNFHKAYFILDEVMLA 144

Query: 121 GELQETSKKAII 132
           G +QETSK+  +
Sbjct: 145 GMMQETSKRTTL 156


>Medtr8g102180.1 | AP-1 complex subunit sigma-like protein | HC |
           chr8:42974414-42976086 | 20130731
          Length = 143

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRR 61
           IRF+L+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+    +FVE R +KI+YRR
Sbjct: 3   IRFVLMVNKQGQTRLAQYYEYLTVEERRTLEGEIVRKCLARNENQCSFVEHRNYKIVYRR 62

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  KV+ +L+E ++ G
Sbjct: 63  YASLFFLVGVDDGENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122

Query: 122 ELQETSKKAII 132
            + ETSK  I+
Sbjct: 123 CIVETSKSNIL 133


>Medtr7g100010.1 | AP-1 complex subunit sigma-like protein | HC |
           chr7:40190294-40192881 | 20130731
          Length = 143

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRR 61
           IRF+L+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+    +FVE R +KI+YRR
Sbjct: 3   IRFVLMVNKQGQTRLAQYYEYLTVEERRTLEGEIVRKCLARNENQCSFVEHRNYKIVYRR 62

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  KV+ +L+E ++ G
Sbjct: 63  YASLFFLVGVDDGENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122

Query: 122 ELQETSKKAII 132
            + ETSK  I+
Sbjct: 123 CIVETSKSNIL 133


>Medtr7g100010.2 | AP-1 complex subunit sigma-like protein | HC |
           chr7:40190294-40192881 | 20130731
          Length = 143

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 91/131 (69%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRR 61
           IRF+L+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+    +FVE R +KI+YRR
Sbjct: 3   IRFVLMVNKQGQTRLAQYYEYLTVEERRTLEGEIVRKCLARNENQCSFVEHRNYKIVYRR 62

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  KV+ +L+E ++ G
Sbjct: 63  YASLFFLVGVDDGENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNG 122

Query: 122 ELQETSKKAII 132
            + ETSK  I+
Sbjct: 123 CIVETSKSNIL 133


>Medtr8g077600.1 | AP-1 complex subunit sigma-like protein | HC |
           chr8:33011642-33006705 | 20130731
          Length = 166

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 9/140 (6%)

Query: 1   MIRFILLQNRQGKTRLAKYYV--PLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRT---- 54
           MI  +L+ N QGK RLAK+Y   P+E  ++ ++   V  ++ +R    +NFV+  +    
Sbjct: 1   MISAVLVMNTQGKPRLAKFYEFRPVE--KQQEIIRNVFAVLCSRPEHVSNFVDAESFFGP 58

Query: 55  -HKIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLI 113
             +++Y+ +A L+F    D ++NELA L+ I +FVE LD  F NVCELD+VFN+ K++ I
Sbjct: 59  DARLVYKHFATLYFVFIFDGSENELAMLDLIQVFVETLDKCFRNVCELDVVFNYSKMHTI 118

Query: 114 LDEFILAGELQETSKKAIIE 133
           LDE I  G++ ETS   +++
Sbjct: 119 LDEIIFGGQVLETSSAEVLK 138


>Medtr8g077600.2 | AP-1 complex subunit sigma-like protein | HC |
          chr8:33011600-33009792 | 20130731
          Length = 116

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 11/104 (10%)

Query: 1  MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRT-----H 55
          MI  +L+ N QGK RLAK+Y      ++ ++   V  ++ +R    +NFV+  +      
Sbjct: 1  MISAVLVMNTQGKPRLAKFYEFRPVEKQQEIIRNVFAVLCSRPEHVSNFVDAESFFGPDA 60

Query: 56 KIIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC 99
          +++Y+ +A L+F    D ++NELA L+ I         F  N C
Sbjct: 61 RLVYKHFATLYFVFIFDGSENELAMLDLIQ------GRFLDNFC 98