Miyakogusa Predicted Gene
- Lj5g3v0186680.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0186680.1 Non Characterized Hit- tr|F6I100|F6I100_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.98,6e-18,seg,NULL; Skp1 dimerisation domain-like,SKP1
component, dimerisation; POZ domain,BTB/POZ fold; no de,CUFF.52628.1
(134 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g094150.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 95 2e-20
Medtr5g022710.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 94 3e-20
Medtr5g022730.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 94 4e-20
Medtr7g021400.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 94 4e-20
Medtr5g085030.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 89 1e-18
Medtr7g094170.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 88 3e-18
Medtr3g110048.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 87 4e-18
Medtr7g094120.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 86 1e-17
Medtr4g032400.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 85 1e-17
Medtr7g021380.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 85 1e-17
Medtr4g032500.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 81 3e-16
Medtr4g032450.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 81 3e-16
Medtr7g094280.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 78 2e-15
Medtr8g468480.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 77 5e-15
Medtr4g032460.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 76 7e-15
Medtr4g032510.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 76 7e-15
Medtr8g056060.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 76 7e-15
Medtr4g033460.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 73 6e-14
Medtr7g094310.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 70 6e-13
Medtr4g033455.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 68 3e-12
Medtr4g131980.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 67 4e-12
Medtr4g021390.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 66 8e-12
Medtr7g094410.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 61 4e-10
Medtr7g006370.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 60 6e-10
Medtr4g119422.1 | cullin-like protein | LC | chr4:49486759-49483... 58 3e-09
Medtr4g032420.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 58 3e-09
Medtr4g017860.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 55 2e-08
Medtr5g082340.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 55 2e-08
Medtr8g089730.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 54 3e-08
Medtr1g099870.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 54 5e-08
Medtr4g127240.1 | SCF ubiquitin ligase, SKP1 component | HC | ch... 50 7e-07
Medtr7g094350.1 | SCF ubiquitin ligase, SKP1 component | LC | ch... 48 3e-06
>Medtr7g094150.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37476563-37476093 | 20130731
Length = 156
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQ 58
M+ST++KITLKSSD L SQTIK MI + + + +VTG ILAKVI+
Sbjct: 1 MSSTSKKITLKSSDNETFEVPEAVA-LESQTIKHMIEDDCTDNGIPVPNVTGQILAKVIE 59
Query: 59 YCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH SE++L+ WDA+FVKVD+D LFD TVA
Sbjct: 60 YCKKHVDAESSDEKPSEDDLKNWDAEFVKVDQDKLFDLILAANYLNIKSLLDLTCQTVAD 119
Query: 112 MMKGMNPQEI 121
M+KG P+EI
Sbjct: 120 MIKGKTPEEI 129
>Medtr5g022710.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:8981617-8983722 | 20130731
Length = 155
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 69/129 (53%), Gaps = 12/129 (9%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVIQY 59
S+ RKITLKSSDG L SQTIK MI A SGI L +VT ILAKVI+Y
Sbjct: 2 SSTRKITLKSSDGETFEVDEAVA-LESQTIKHMIEDDCADSGI-PLPNVTSKILAKVIEY 59
Query: 60 CNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQM 112
C KH SE+E++ WD +FVKVD+ TLFD TVA M
Sbjct: 60 CKKHVEAAAAEEKPSEDEIKSWDGEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADM 119
Query: 113 MKGMNPQEI 121
+KG P+EI
Sbjct: 120 IKGKTPEEI 128
>Medtr5g022730.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:8991146-8992974 | 20130731
Length = 155
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVIQY 59
S+ RKITLKSSDG L SQTIK MI A SGI L +VT ILAKVI+Y
Sbjct: 2 SSTRKITLKSSDGETFEVDEAVA-LESQTIKHMIEDDCADSGI-PLPNVTSKILAKVIEY 59
Query: 60 CNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQM 112
C KH +E+EL+ WD++FVKVD+ TLFD TVA M
Sbjct: 60 CKKHVDAAAAEEKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 119
Query: 113 MKGMNPQEI 121
+KG P+EI
Sbjct: 120 IKGKTPEEI 128
>Medtr7g021400.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:6778355-6778825 | 20130731
Length = 156
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 71/130 (54%), Gaps = 10/130 (7%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQ 58
M+ST +K+TLKSSD L SQTIK MI + + + +VTG ILAKVI+
Sbjct: 1 MSSTTKKMTLKSSDNETFEVPEAVA-LESQTIKHMIEDDCTDNGIPVPNVTGQILAKVIE 59
Query: 59 YCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH SE++L+ WDA+FVKVD+DTLFD +VA
Sbjct: 60 YCKKHVDAASSDEKPSEDDLKNWDAEFVKVDQDTLFDLILAANYLNIKSLLDLTCQSVAD 119
Query: 112 MMKGMNPQEI 121
M+KG P+EI
Sbjct: 120 MIKGKTPEEI 129
>Medtr5g085030.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:36687130-36686663 | 20130731
Length = 155
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 70/130 (53%), Gaps = 13/130 (10%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINA----HSGIVALSDVTGNILAKVIQ 58
S+ RKITLKSSDG L SQTIK +I +SGI LS+VT NILAKVI+
Sbjct: 2 SSTRKITLKSSDGETFEIDEAVA-LESQTIKLLIEDDCVDYSGI-PLSNVTSNILAKVIE 59
Query: 59 YCNKH-SSGSENE------LRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH GS E LR W+++FVKVD+DTL D TV +
Sbjct: 60 YCKKHVEVGSSEEKSLKDDLRAWESEFVKVDQDTLLDLISAANYLNIKNLLDLTCKTVGE 119
Query: 112 MMKGMNPQEI 121
MMK P+EI
Sbjct: 120 MMKKTTPEEI 129
>Medtr7g094170.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37481085-37480615 | 20130731
Length = 156
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVI 57
M+ST +KITLKSSD L SQTIK MI +GI + +VTG ILAKVI
Sbjct: 1 MSSTTKKITLKSSDNETFEVPEAVA-LESQTIKYMIEDDCTDNGI-PVPNVTGQILAKVI 58
Query: 58 QYCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVA 110
+YC KH SE++L+ WDA+FVKVD+ LF TVA
Sbjct: 59 EYCKKHVDAESSDEKPSEDDLKNWDAEFVKVDQAKLFGLILAANYLNIKSLLDLTCQTVA 118
Query: 111 QMMKGMNPQEI 121
M+KG P+EI
Sbjct: 119 DMIKGKTPEEI 129
>Medtr3g110048.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr3:50914886-50915363 | 20130731
Length = 158
Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 68/132 (51%), Gaps = 12/132 (9%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQ 58
M+S +KITL SSDG SQ IK MI + + + L DVT NILA VI+
Sbjct: 1 MSSYTKKITLNSSDGETFKVSKMVAR-ESQVIKHMIEEDCANEAIPLQDVTANILAMVIE 59
Query: 59 YCNKH-------SSG--SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTV 109
YC KH S G SE++L WDA+FVKVD+ TLF+ TV
Sbjct: 60 YCKKHVDAAAASSDGKPSEDDLEDWDAEFVKVDKGTLFNLIDAANYLEIKSLLDLTCQTV 119
Query: 110 AQMMKGMNPQEI 121
A MMKG P+EI
Sbjct: 120 ADMMKGKTPEEI 131
>Medtr7g094120.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37466777-37466298 | 20130731
Length = 159
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 68/134 (50%), Gaps = 12/134 (8%)
Query: 2 ASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQY 59
++T + ITLKS D L SQTIK MI + + + +VTG ILAKVI+Y
Sbjct: 3 STTTKMITLKSYDNEIFEVPEAVA-LESQTIKHMIEDDCADNAIPVQNVTGKILAKVIEY 61
Query: 60 CNKH---------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVA 110
C KH S SE L+ WDADFVKVD++TLF+ + A
Sbjct: 62 CKKHVQVASADEKPSESEEYLKNWDADFVKVDKETLFELILAANYLDIKSLLDLTCQSAA 121
Query: 111 QMMKGMNPQEICEL 124
MMKG P+E+ E+
Sbjct: 122 DMMKGKTPEEMREM 135
>Medtr4g032400.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11160477-11160971 | 20130731
Length = 164
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 2 ASTA-RKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVI 57
+STA +KITLKSSD L SQTIK +I+ A + L +VTG ILA VI
Sbjct: 7 SSTATKKITLKSSDNETFEIEKAVA-LESQTIKHLIDDNCADDSGIPLPNVTGKILAMVI 65
Query: 58 QYCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVA 110
++C KH SE+E+ +WD +FVKVD+DTLFD TVA
Sbjct: 66 EHCKKHVDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVA 125
Query: 111 QMMKGMNPQEI 121
M+KG P+EI
Sbjct: 126 DMIKGRTPEEI 136
>Medtr7g021380.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:6774068-6774538 | 20130731
Length = 156
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVI 57
M+ST +KITLKSSD L QTIK MI +GI+ + +VTG ILAKVI
Sbjct: 1 MSSTTKKITLKSSDNETFEVPEAVA-LELQTIKHMIKDDCTDNGIL-VPNVTGQILAKVI 58
Query: 58 QYCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVA 110
+YC KH SE++L+ WDA+FVKV + TLFD VA
Sbjct: 59 EYCKKHIDAASSDEKPSEDDLKNWDAEFVKVHQTTLFDLILAANDLNIKSLLDLTCQYVA 118
Query: 111 QMMKGMNPQEI 121
M+KG P+EI
Sbjct: 119 DMIKGKTPEEI 129
>Medtr4g032500.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11190203-11189647 | 20130731
Length = 152
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 2 ASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVIQ 58
+S+ +KI LKSS+G + SQTIK +I A+ + +S+VTG ILA VI+
Sbjct: 3 SSSMKKIILKSSEGETFEIEEAVA-VQSQTIKHLIGDQCANDTEIPISNVTGKILAMVIE 61
Query: 59 YCNKHSSG-SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKGMN 117
YC KH S +ELR+WDA+FV+VD+DTL T A +K
Sbjct: 62 YCKKHVDAVSSDELRKWDAEFVQVDQDTLLKLILAARYLDIKSLYDLGCMTTANNIKDKT 121
Query: 118 PQEICEL 124
P+EIC++
Sbjct: 122 PEEICKI 128
>Medtr4g032450.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11174465-11174992 | 20130731
Length = 175
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINAHSGI--VALSDVTGNILAKVIQ 58
+ S+A+KITLKS DG L SQTIK +I+ S + + +VTG ILAKVI+
Sbjct: 19 LDSSAKKITLKSYDGETFDIEEAVA-LESQTIKHLIDDVSDDTGIPIPNVTGKILAKVIE 77
Query: 59 YCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH E+EL++WDA+FV+VD++TLFD +VA
Sbjct: 78 YCKKHVEYARSNEKPPEDELKKWDAEFVQVDQETLFDLILAANYLNIKSLLDLTCKSVAD 137
Query: 112 MM-KGMNPQEICE 123
MM P+ I E
Sbjct: 138 MMLAAKTPEAIRE 150
>Medtr7g094280.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37526020-37525544 | 20130731
Length = 158
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 1 MASTARK-ITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVI 57
M+ST++K ITLKS DG L SQTIK +I + ++ + +VTG ILAKVI
Sbjct: 1 MSSTSKKMITLKSDDGETFEVSEAVA-LKSQTIKHIIEDDCADNVIPVPNVTGKILAKVI 59
Query: 58 QYCNKHSSG-------SENELRQWDADFVK-VDRDTLFDXXXXXXXXXXXXXXXXXVHTV 109
+YC KH SE++L+ WDADF K VD+ TLF TV
Sbjct: 60 EYCKKHVEATSSDEKVSEDDLKNWDADFAKEVDQQTLFQILLAANYLNIKNLLDLCCQTV 119
Query: 110 AQMMKGMNPQEICEL 124
A +K P+EI E+
Sbjct: 120 ADDIKDKKPEEIREI 134
>Medtr8g468480.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:24817057-24817533 | 20130731
Length = 158
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINA----HSGIVALSDVTGNILAKVIQ 58
S+ RKITLKSSDG + SQTIK +I A +GI L VT NILAKVI+
Sbjct: 2 SSTRKITLKSSDGETFEIDEVVA-MESQTIKHVIEAGCVDDAGIPLLQ-VTRNILAKVIE 59
Query: 59 YCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH SE+ L WD +F+KVD TL T+A
Sbjct: 60 YCKKHVEATSSEEKPSEDALNAWDTEFLKVDPYTLMKLTLAANYLNIKNLYDLTCKTIAD 119
Query: 112 MMKGMNPQEICE 123
MMK P+EI E
Sbjct: 120 MMKNKPPEEIRE 131
>Medtr4g032460.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11179505-11179053 | 20130731
Length = 150
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 4 TARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVIQYC 60
++ KI LKSSDG + SQTIK +I+ A+ + L++VTG ILA VI+YC
Sbjct: 3 SSPKIILKSSDGETFKIEKAVA-MQSQTIKHLIDEECANDTGIPLTNVTGKILAMVIEYC 61
Query: 61 NKH-SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKGMNPQ 119
KH + S +EL +WDA+FVKVD++TLF+ T +K P+
Sbjct: 62 KKHVDAASSDELEKWDAEFVKVDQNTLFNLIMAANYLNIKSLLDLTCMTTMDNIKDKTPE 121
Query: 120 EI 121
EI
Sbjct: 122 EI 123
>Medtr4g032510.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:11192751-11192290 | 20130731
Length = 153
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 6/126 (4%)
Query: 1 MAS-TARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKV 56
MAS +++KI LKS +G + SQTIK +I+ A+ + +S+VT ILA V
Sbjct: 1 MASLSSKKIILKSYEGETFEIEEAVA-MQSQTIKLLIDDDCANDTGIPISNVTSKILAMV 59
Query: 57 IQYCNKHSSG-SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKG 115
I+YC KH+ S +ELR+WDA+FV+VD+DTLF+ T A +K
Sbjct: 60 IEYCKKHADDVSSDELRKWDAEFVQVDQDTLFNLISAANYLNIKSLLDLTCMTAADNIKD 119
Query: 116 MNPQEI 121
P+EI
Sbjct: 120 KTPEEI 125
>Medtr8g056060.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:24406704-24406231 | 20130731
Length = 157
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQ 58
M+S+ARK+TLKSSD L SQTIK MI + + L +VT ILAKVI+
Sbjct: 1 MSSSARKVTLKSSDDETFEVEEAVA-LKSQTIKHMIEDDCAKTEIPLPNVTSKILAKVIE 59
Query: 59 YCNKH------SSG--SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVA 110
YC KH S G SE++++ WDA+FVKVD +T F+ VA
Sbjct: 60 YCKKHVEATTSSEGKPSEDDVKAWDAEFVKVDLNTRFELILAANYLDIKSLLELTCQDVA 119
Query: 111 QMMKGMNPQEI 121
+ +K +EI
Sbjct: 120 ETIKDKTVEEI 130
>Medtr4g033460.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11932971-11931829 | 20130731
Length = 248
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN--AHSGIVALSDVTGNILAKVIQ 58
+ S+ +KITL SSDG + +TIK++I + + + VTG ILA +++
Sbjct: 5 VESSTKKITLTSSDGEIFEIEKTVA-MEFKTIKNLIEDVVDNNRIPIPKVTGKILALIVE 63
Query: 59 YCNKH-------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH SE++L+ WDA+FV++D LFD TVA
Sbjct: 64 YCKKHVNAVNSDEKSSEHDLKTWDAEFVQLDHPVLFDLISAASFLDIKSLYDLTCKTVAD 123
Query: 112 MMKGMNPQEI 121
MM G P++I
Sbjct: 124 MMNGKTPEQI 133
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 7/53 (13%)
Query: 43 VALSDVTGNILAKVIQYCNKH-----SSG--SENELRQWDADFVKVDRDTLFD 88
+ +S+VTG ILAKVI+YC KH S G SE+EL++WDA+FVKVD+ TLFD
Sbjct: 164 IPISEVTGRILAKVIEYCKKHVEAESSDGKPSEDELKKWDAEFVKVDKPTLFD 216
>Medtr7g094310.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37535215-37535690 | 20130731
Length = 148
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 1 MASTARK-ITLKSSDGXXXXXXXXXXXLHSQTIKDMINAHSGIVALSDVTGNILAKVIQY 59
M+ST++K ITLKS DG L SQTIK +I D NILAKVI+Y
Sbjct: 1 MSSTSKKMITLKSDDGETFEVSEAVA-LKSQTIKHIIE--------DDCADNILAKVIEY 51
Query: 60 CNKHSSG-------SENELRQWDADFVK-VDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
C KH SE++L+ WDADF K VD+ TLF TVA
Sbjct: 52 CKKHVEATSSDEKVSEDDLKNWDADFTKEVDQQTLFQILLAANYLNIKNLLDLCCQTVAD 111
Query: 112 MMKGMNPQEI 121
+K P+EI
Sbjct: 112 DIKDKKPEEI 121
>Medtr4g033455.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11929419-11928589 | 20130731
Length = 160
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINA--HSGIVALSDVTGNILAKVIQ 58
+ S+ +KITL SSDG + S+TIK++I + + + V G ILA VI+
Sbjct: 5 VESSTKKITLTSSDGEIFEIEKEVA-MESKTIKNLIEDLDDNTRIPIYKVRGEILALVIE 63
Query: 59 YCNKHSSG-------SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQ 111
YC KH + S++ L+ WDA+FV++D+ LFD TVA
Sbjct: 64 YCKKHVNAMNSDEKPSKHALKMWDAEFVQLDQPVLFDLISAANFLDIKSLYDLTCKTVAD 123
Query: 112 MMKGMNPQEICEL 124
MM P++I E+
Sbjct: 124 MMNDKTPEQIREM 136
>Medtr4g131980.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:55118613-55119713 | 20130731
Length = 146
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINAHSG----IVALSDVTGNILAKVIQ 58
S+ KITLKSSDG L SQTIK MI +SG IV L+ V G IL KVI+
Sbjct: 2 SSTNKITLKSSDGKTFEVYEDVA-LESQTIKHMIKKNSGSDNEIVILN-VKGKILTKVIE 59
Query: 59 YCNKHSSGSE---NELRQWDADFVK-VDRDTLFD 88
YC KH + ++L+ WDA+F+K VD+DTL D
Sbjct: 60 YCKKHVEEVKKRVDDLKAWDAEFMKQVDQDTLND 93
>Medtr4g021390.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:6948402-6947932 | 20130731
Length = 156
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 2 ASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN--AHSGIVALSDVTGNILAKVIQY 59
+S+ +K T+KSSDG Q+IK++ + A+ + + + G LAKVI+Y
Sbjct: 4 SSSTKKFTMKSSDGETFEIEEVVF----QSIKNLTDGAANDTEILVPHIPGKFLAKVIEY 59
Query: 60 CNKHSSGS-------ENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQM 112
C KH + ++EL +WD +FVKVD T+F+ + +A M
Sbjct: 60 CKKHVEAASSDEKLFDDELNKWDTEFVKVDNVTIFNLIWAASYLNIKSLLDLSMKALADM 119
Query: 113 MKGMNPQEICELTMRMSGFR 132
+K P+EI ++ ++ +R
Sbjct: 120 IKDKKPEEISKIFNIVNAYR 139
>Medtr7g094410.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr7:37580530-37581048 | 20130731
Length = 172
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 2 ASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMI--NAHSGIVALSDVTGNILAKVIQY 59
++T + ITLKS D S TIK MI N ++ + +V ILAKVI+Y
Sbjct: 3 SATKKMITLKSYDSKTFEVSEAVAH-ESHTIKHMIEENCAENVITIPNVNSKILAKVIEY 61
Query: 60 CNKH----SSGSENELRQWDADFVKVDRDTLFD 88
C KH + S ++L WDADFVKVD+ L +
Sbjct: 62 CKKHVEAAAKASSDDLNCWDADFVKVDKAMLLE 94
>Medtr7g006370.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr7:662412-662005 | 20130731
Length = 135
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 19/140 (13%)
Query: 2 ASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN--AHSGIVALSDVTGNILAKVIQY 59
+S+ +KITLKSSD Q+IK++ + A + + +TG ILAKVI+Y
Sbjct: 4 SSSTKKITLKSSDSVTFEIEEVVF----QSIKNLTDDVADDIEILVPRITGKILAKVIEY 59
Query: 60 CNKHSSGS-------ENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQM 112
C KH + +++L +W +FV+VD TLF+ + T+A M
Sbjct: 60 CKKHVEAASSYEKLFDDKLNKWYTEFVEVDNVTLFN------LIWAASILDLSIKTLADM 113
Query: 113 MKGMNPQEICELTMRMSGFR 132
+K P++I ++ ++ +R
Sbjct: 114 IKDKKPEDIGKIFNIINAYR 133
>Medtr4g119422.1 | cullin-like protein | LC | chr4:49486759-49483972
| 20130731
Length = 368
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 4 TARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINAHS----GIVALSDVTGNILAKVIQY 59
++RKI L SSDG L S+TI+D I ++LS V+ ILA VI+Y
Sbjct: 229 SSRKINLISSDGDMFEVDYDVA-LMSKTIEDAIETDPTGDVNCISLSLVSSKILAMVIEY 287
Query: 60 CNKHSSG--SENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKGMN 117
C KH + S+ +L WD +FV V TLFD + M+KG
Sbjct: 288 CKKHKNAQMSDVDLMDWDVEFVNVHYTTLFDLVLSSNYMNINSLYNLVGGKIGDMIKGKT 347
Query: 118 PQEICEL 124
EI +L
Sbjct: 348 AGEIAQL 354
>Medtr4g032420.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr4:11167586-11166063 | 20130731
Length = 150
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Query: 32 IKDMINAHSGIVALSDVTGNILAKVIQYCNKH-SSGSENELRQWDADFVKVDRDTLF 87
I D H GI +S+VTG ILA VI+YC KH + S +EL +WDA+F K+D+DTL
Sbjct: 42 IHDGCTNHIGI-PISNVTGKILAMVIEYCKKHVDAASSDELEKWDAEFDKIDQDTLL 97
>Medtr4g017860.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:5646317-5647329 | 20130731
Length = 220
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 66/170 (38%), Gaps = 55/170 (32%)
Query: 5 ARKITLKSSDGXXXXXXXXXXXLHSQTIKDMINAH----SGIVALSDVTGNILAKVIQYC 60
++KITL SSDG L SQTIK MI + +GI +S+VT ILA VI+YC
Sbjct: 26 SKKITLVSSDGDTFEIDEAVA-LESQTIKYMIEDNCVDDTGI-PISNVTSEILAMVIEYC 83
Query: 61 NKH-------------------------------SSGS------------------ENEL 71
KH SG E+EL
Sbjct: 84 KKHVEAAAFAEEEEKPWKTDGLVYRKKVSSTDEKKSGEDVSKAAAAVSSEEKVVSKEDEL 143
Query: 72 RQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKGMNPQEI 121
+WDA+FVKVD TLF+ TV ++M G ++I
Sbjct: 144 DKWDAEFVKVDNTTLFELVRAANYLDIKSLLELTCKTVGEIMHGKTSEQI 193
>Medtr5g082340.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr5:35390746-35390269 | 20130731
Length = 145
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 3 STARKITLKSSDGXXXXXXXXXXXLHSQTIKDMIN---AHSGIVALSDVTGNILAKVIQY 59
S+ RK+TLKSSDG L SQT+K +I H L VT NILAKVI+Y
Sbjct: 2 SSTRKVTLKSSDGGTFKIDKAVA-LESQTLKHIIEDDCIHDNGNPLIKVTSNILAKVIEY 60
Query: 60 CNKHSSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXVHTVAQMMKGMNPQ 119
C KH +E + D + TL D + +MM P
Sbjct: 61 CKKHVEAGSSEEKPLHDDL----KATLLDLILSANYLNIKSLLDLTCQALGEMMTKTTPD 116
Query: 120 EI 121
EI
Sbjct: 117 EI 118
>Medtr8g089730.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr8:37363116-37362796 | 20130731
Length = 106
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 43 VALSDVTGNILAKVIQYCNKHSSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXX 102
+ + +V G ILAKVI+YC KH G DFVKVD+ TLFD
Sbjct: 11 IPVQNVAGMILAKVIEYCKKHVDG----------DFVKVDQGTLFDLILASNYLDIKSLL 60
Query: 103 XXXVHTVAQMMKGMNPQEICE 123
TV M+KG P++I E
Sbjct: 61 DLTCETVVNMIKGKTPEQIRE 81
>Medtr1g099870.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr1:45071880-45071569 | 20130731
Length = 103
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 56 VIQYCNKH---------SSGSENELRQWDADFVKVDRDTLFDXXXXXXXXXXXXXXXXXV 106
VI YC KH SE++L+ WDA+FVKVD+ TLFD
Sbjct: 2 VIDYCKKHVDATAASSDEKPSEDDLKNWDAEFVKVDQATLFDLILAANYLDIKGLLDLTC 61
Query: 107 HTVAQMMKGMNPQEI 121
VA M+KG P+EI
Sbjct: 62 QIVADMIKGKTPEEI 76
>Medtr4g127240.1 | SCF ubiquitin ligase, SKP1 component | HC |
chr4:52792943-52791050 | 20130731
Length = 125
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 38 AHSGIVALSDVTGNILAKVIQYCNKH---SSGSENELRQWDADFVK-VDRDTLFDXXXXX 93
A +GI + + T IL KVI+YC KH +S + + + WDADF+K V+ LF+
Sbjct: 26 ADNGI-PVPNATSKILTKVIEYCKKHVEATSSTSEDHKVWDADFIKEVNVVMLFELIRAA 84
Query: 94 XXXXXXXXX-XXXVHTVAQMMKGMNPQEIC 122
VA M+KG P+EIC
Sbjct: 85 NYLNVKSLLDLLTCQVVANMIKGKTPEEIC 114
>Medtr7g094350.1 | SCF ubiquitin ligase, SKP1 component | LC |
chr7:37557357-37557950 | 20130731
Length = 197
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 61/150 (40%), Gaps = 63/150 (42%)
Query: 1 MASTARKITLKSSDGXXXXXXXXXXXLHSQTIKDM------------INAHSGIVAL--- 45
M+ST +KITLKSSD + SQTIK M +N S I+A+
Sbjct: 1 MSSTTKKITLKSSDCKSFEVSEPVA-MESQTIKRMMEENCGNNDILILNVKSKILAMVIE 59
Query: 46 -------------------SD----------------------VTGNILAKVIQYCNKH- 63
SD VTGN+LAK I YC KH
Sbjct: 60 YCKMHVEADLDSEFVKVNYSDYLTVKAIECSKKLFNEVNEAWGVTGNVLAKGIDYCEKHV 119
Query: 64 ----SSGSENELRQWDADFVK-VDRDTLFD 88
++ S ++L+ WDA FV+ +D DTL D
Sbjct: 120 DDAAANASSSDLKVWDAKFVRQIDMDTLCD 149