Miyakogusa Predicted Gene

Lj5g3v0133240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0133240.1 Non Characterized Hit- tr|G3R353|G3R353_GORGO
Uncharacterized protein OS=Gorilla gorilla gorilla
GN=,27.2,8e-19,TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology domain; TRAM,
LAG1 and CLN8 homology domains.,TRAM/LAG1/CLN8
,NODE_53020_length_1233_cov_40.281429.path1.1
         (244 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g022950.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   393   e-109

>Medtr1g022950.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr1:7253562-7256936 | 20130731
          Length = 240

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/240 (78%), Positives = 214/240 (89%), Gaps = 1/240 (0%)

Query: 1   MEDYITKIIVVGVVSWTTAFVLVRRIFPKRTFDFSNRIVSTIHATLAVTLASLSVEDWKC 60
           ME+YI K IVVGV SWTT F+++R+IFPKR+FDFSNRIVSTIHA LAVTLA+LSV+DWKC
Sbjct: 1   MEEYIQKTIVVGVFSWTTTFLVMRKIFPKRSFDFSNRIVSTIHAILAVTLATLSVQDWKC 60

Query: 61  PICPVASKSSHPKMQVLAVSLSYLIYDLVCCLFDGRVNMDNTIHHLVSIVGIGAGLYYQK 120
           PICPVAS SS+ +M+VLAVSLSYLIYDLVCCLFD + N DNTIHHLVSIVG+ AGL YQK
Sbjct: 61  PICPVASDSSYKQMEVLAVSLSYLIYDLVCCLFDEKFNWDNTIHHLVSIVGLIAGLCYQK 120

Query: 121 CGSEMVAALWVTEMSSPFLHLRELLKELGYRDTLLNFTADILFAAIFTFARMMAGPCLTY 180
           CGSEMV A+WVTEMSSPFLHLRELLKELGY+DT LN TADILFA+IFTFARMM GPC+TY
Sbjct: 121 CGSEMVGAVWVTEMSSPFLHLRELLKELGYKDTPLNLTADILFASIFTFARMMIGPCITY 180

Query: 181 VTLSANNPFLIKAMGLGLQLVSTFCFFKIVRIMKHKLTKR-STMTNGIKHADTRRKMSNS 239
           VTL++NNPFLIKAMGLGLQLVSTF F+KIVR+MK+KLTK+ ST  NGIKH    +  ++S
Sbjct: 181 VTLTSNNPFLIKAMGLGLQLVSTFWFYKIVRMMKYKLTKKSSTSKNGIKHTTNIKSKTSS 240