Miyakogusa Predicted Gene
- Lj5g3v0110950.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0110950.1 tr|A2Q3R6|A2Q3R6_MEDTR Poly(ADP-ribose)
polymerase, catalytic region OS=Medicago truncatula
GN=MTR_7,58.57,6e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; PARP_CATALYTIC,Poly(ADP-ribose) polymeras,CUFF.52590.1
(137 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g011550.1 | inactive poly [ADP-ribose] polymerase RCD1 | L... 96 1e-20
Medtr5g032190.1 | inactive poly [ADP-ribose] polymerase RCD1 | H... 93 6e-20
Medtr5g032190.3 | inactive poly [ADP-ribose] polymerase RCD1 | H... 93 8e-20
Medtr5g032190.2 | inactive poly [ADP-ribose] polymerase RCD1 | H... 92 1e-19
Medtr1g112330.1 | inactive poly [ADP-ribose] polymerase RCD1 | H... 92 1e-19
Medtr1g112330.2 | inactive poly [ADP-ribose] polymerase RCD1 | H... 92 1e-19
Medtr1g112330.3 | inactive poly [ADP-ribose] polymerase RCD1 | H... 92 2e-19
Medtr5g029580.1 | inactive poly [ADP-ribose] polymerase SRO4 | L... 91 2e-19
Medtr1g112330.5 | inactive poly [ADP-ribose] polymerase RCD1 | H... 91 4e-19
Medtr1g112330.4 | inactive poly [ADP-ribose] polymerase RCD1 | H... 91 4e-19
Medtr7g011880.1 | RCD1-SRO-TAF4 (RST) plant domain protein | LC ... 67 6e-12
Medtr4g105740.2 | inactive poly [ADP-ribose] polymerase SRO4 | H... 58 3e-09
Medtr4g105740.1 | inactive poly [ADP-ribose] polymerase SRO4 | H... 57 3e-09
Medtr8g088250.1 | inactive poly [ADP-ribose] polymerase SRO2, pu... 54 3e-08
Medtr3g077870.1 | inactive poly [ADP-ribose] polymerase SRO4 | H... 54 4e-08
>Medtr7g011550.1 | inactive poly [ADP-ribose] polymerase RCD1 | LC |
chr7:3130244-3127740 | 20130731
Length = 547
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+LRP ++ Q + S+ +YDNGVDDIQCP+ Y +WNMN+NTHIYPEFV+SFK
Sbjct: 373 MGNMELLRP----SSKQLRPSDCEYDNGVDDIQCPKCYVVWNMNMNTHIYPEFVVSFKSP 428
Query: 61 RDVEGHFCGN 70
E + C N
Sbjct: 429 LGFEENICSN 438
>Medtr5g032190.1 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr5:13829161-13836239 | 20130731
Length = 573
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+LRPG QF+ S+S YD+GVDDI PRYY +WNMN NTHI PE+V+SFKVS
Sbjct: 388 MGNMELLRPG----TRQFRPSSSDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVS 443
Query: 61 RDVEGHFCGN 70
EG G+
Sbjct: 444 SATEGLLLGS 453
>Medtr5g032190.3 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr5:13829161-13836239 | 20130731
Length = 482
Score = 92.8 bits (229), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+LRPG QF+ S+S YD+GVDDI PRYY +WNMN NTHI PE+V+SFKVS
Sbjct: 388 MGNMELLRPG----TRQFRPSSSDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVS 443
Query: 61 RDVEGHFCGN 70
EG G+
Sbjct: 444 SATEGLLLGS 453
>Medtr5g032190.2 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr5:13829161-13836239 | 20130731
Length = 488
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+LRPG QF+ S+S YD+GVDDI PRYY +WNMN NTHI PE+V+SFKVS
Sbjct: 388 MGNMELLRPG----TRQFRPSSSDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVS 443
Query: 61 RDVEGHFCGN 70
EG G+
Sbjct: 444 SATEGLLLGS 453
>Medtr1g112330.1 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr1:50855008-50849523 | 20130731
Length = 569
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+L PG Q++ S+S YD+GVDDI PR + +WNMN+NTHIYPEFV+SFKVS
Sbjct: 395 MGNMELLHPG----TRQYRPSSSDYDSGVDDIHNPRNFIVWNMNMNTHIYPEFVVSFKVS 450
Query: 61 RDVEGHFCG 69
D EG G
Sbjct: 451 SDAEGLLLG 459
>Medtr1g112330.2 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr1:50855008-50849518 | 20130731
Length = 569
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+L PG Q++ S+S YD+GVDDI PR + +WNMN+NTHIYPEFV+SFKVS
Sbjct: 395 MGNMELLHPG----TRQYRPSSSDYDSGVDDIHNPRNFIVWNMNMNTHIYPEFVVSFKVS 450
Query: 61 RDVEGHFCG 69
D EG G
Sbjct: 451 SDAEGLLLG 459
>Medtr1g112330.3 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr1:50854983-50849518 | 20130731
Length = 566
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 51/69 (73%), Gaps = 4/69 (5%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+L PG Q++ S+S YD+GVDDI PR + +WNMN+NTHIYPEFV+SFKVS
Sbjct: 395 MGNMELLHPG----TRQYRPSSSDYDSGVDDIHNPRNFIVWNMNMNTHIYPEFVVSFKVS 450
Query: 61 RDVEGHFCG 69
D EG G
Sbjct: 451 SDAEGLLLG 459
>Medtr5g029580.1 | inactive poly [ADP-ribose] polymerase SRO4 | LC |
chr5:12416462-12413704 | 20130731
Length = 364
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
M NME+LRP N+ Q + S +YDNGVD+IQCP+YY +WN+NINTHIYPEFV+ FK S
Sbjct: 186 MENMELLRP----NSDQVRPSGYEYDNGVDNIQCPKYYVVWNININTHIYPEFVVRFKSS 241
Query: 61 RDVEG 65
+ EG
Sbjct: 242 LEAEG 246
>Medtr1g112330.5 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr1:50854983-50849523 | 20130731
Length = 460
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+L PG Q++ S+S YD+GVDDI PR + +WNMN+NTHIYPEFV+SFKVS
Sbjct: 395 MGNMELLHPG----TRQYRPSSSDYDSGVDDIHNPRNFIVWNMNMNTHIYPEFVVSFKVS 450
Query: 61 RDVEG 65
D EG
Sbjct: 451 SDAEG 455
>Medtr1g112330.4 | inactive poly [ADP-ribose] polymerase RCD1 | HC |
chr1:50854983-50850437 | 20130731
Length = 460
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%), Gaps = 4/65 (6%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MGNME+L PG Q++ S+S YD+GVDDI PR + +WNMN+NTHIYPEFV+SFKVS
Sbjct: 395 MGNMELLHPG----TRQYRPSSSDYDSGVDDIHNPRNFIVWNMNMNTHIYPEFVVSFKVS 450
Query: 61 RDVEG 65
D EG
Sbjct: 451 SDAEG 455
>Medtr7g011880.1 | RCD1-SRO-TAF4 (RST) plant domain protein | LC |
chr7:3291067-3292090 | 20130731
Length = 193
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 14 NASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVSR 61
N Q + S +YDNGV D+Q P+ Y +W MN+NTHIYPEFV+SFK +
Sbjct: 80 NTKQLRPSGCEYDNGVVDVQRPKCYVVWIMNMNTHIYPEFVVSFKPPK 127
>Medtr4g105740.2 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
chr4:43896318-43900298 | 20130731
Length = 310
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MG +E + G + Q + S+ ++D+GVD P+ + +W+ INTH+ PE+V+SFK++
Sbjct: 165 MGKLEAVPAG----SDQRRPSSEEFDSGVDSFSSPKEFIVWSNKINTHVLPEYVLSFKLA 220
Query: 61 RDVEGHFCGNVG 72
D +GH VG
Sbjct: 221 SD-KGHEKVGVG 231
>Medtr4g105740.1 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
chr4:43896289-43900298 | 20130731
Length = 325
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
MG +E + G + Q + S+ ++D+GVD P+ + +W+ INTH+ PE+V+SFK++
Sbjct: 165 MGKLEAVPAG----SDQRRPSSEEFDSGVDSFSSPKEFIVWSNKINTHVLPEYVLSFKLA 220
Query: 61 RDVEGHFCGNVG 72
D +GH VG
Sbjct: 221 SD-KGHEKVGVG 231
>Medtr8g088250.1 | inactive poly [ADP-ribose] polymerase SRO2,
putative | HC | chr8:36541903-36539541 | 20130731
Length = 290
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 11 IGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISF 57
+ ++ Q Q S +YD GVDDI PR + IW +N+HI+PE+++SF
Sbjct: 157 VPVDSKQSQPSCRQYDTGVDDISSPRKHIIWTAFMNSHIHPEYIVSF 203
>Medtr3g077870.1 | inactive poly [ADP-ribose] polymerase SRO4 | HC |
chr3:35056982-35060567 | 20130731
Length = 327
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 8/70 (11%)
Query: 1 MGNMEILRPGIGTNASQFQSSNSKYDNGVDDIQCPRYYTIWNMNINTHIYPEFVISFKVS 60
+G EI++ + Q S + YD+GVD P Y IW+ +NTH++P +V+SFKVS
Sbjct: 178 LGRTEIVQ----ADTKQCYPSCADYDSGVDSFSAPTKYMIWSSRMNTHVWPAYVLSFKVS 233
Query: 61 R----DVEGH 66
++EG+
Sbjct: 234 SLKAVEIEGY 243