Miyakogusa Predicted Gene

Lj5g3v0108610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0108610.1 tr|I1HPQ6|I1HPQ6_BRADI 50S ribosomal protein L31
OS=Brachypodium distachyon GN=BRADI2G44440 PE=3 SV=,57.14,3e-19,L31:
ribosomal protein L31,Ribosomal protein L31; Ribosomal_L31,Ribosomal
protein L31; RIBOSOMALL31,,CUFF.52568.1
         (154 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g022450.2 | 50S ribosomal protein L31 | HC | chr1:7172664-...   204   4e-53
Medtr1g022450.1 | 50S ribosomal protein L31 | HC | chr1:7172657-...   201   2e-52

>Medtr1g022450.2 | 50S ribosomal protein L31 | HC |
           chr1:7172664-7173650 | 20130731
          Length = 136

 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 110/126 (87%), Gaps = 2/126 (1%)

Query: 20  MAQCVTNTFVQGGKPLLPLPTKTTVGRRAENV-TVGVWCRKKDIHPKFYDDAKVSCSGEL 78
           MAQC+TNTFVQG KP LPLPTK    ++ + V   GV+C+KKDIHPKF++DAKV C+ EL
Sbjct: 1   MAQCITNTFVQG-KPFLPLPTKNLQNQKGKKVGNFGVYCKKKDIHPKFHEDAKVYCNNEL 59

Query: 79  VMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIMEIPNLKGEI 138
           VMTTGGTQKEYVVDVWSGNHPF+LGNRSA M+SDDQVEKF+KK+GEL+ IMEIP LKGEI
Sbjct: 60  VMTTGGTQKEYVVDVWSGNHPFYLGNRSALMVSDDQVEKFRKKFGELSQIMEIPVLKGEI 119

Query: 139 VIPSRR 144
           VIPSRR
Sbjct: 120 VIPSRR 125


>Medtr1g022450.1 | 50S ribosomal protein L31 | HC |
           chr1:7172657-7173650 | 20130731
          Length = 134

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/126 (76%), Positives = 110/126 (87%), Gaps = 4/126 (3%)

Query: 20  MAQCVTNTFVQGGKPLLPLPTKTTV-GRRAENVTVGVWCRKKDIHPKFYDDAKVSCSGEL 78
           MAQC+TNTFVQG KP LPLPTK    G++  N   GV+C+KKDIHPKF++DAKV C+ EL
Sbjct: 1   MAQCITNTFVQG-KPFLPLPTKNNQKGKKVGNF--GVYCKKKDIHPKFHEDAKVYCNNEL 57

Query: 79  VMTTGGTQKEYVVDVWSGNHPFFLGNRSASMISDDQVEKFKKKYGELTDIMEIPNLKGEI 138
           VMTTGGTQKEYVVDVWSGNHPF+LGNRSA M+SDDQVEKF+KK+GEL+ IMEIP LKGEI
Sbjct: 58  VMTTGGTQKEYVVDVWSGNHPFYLGNRSALMVSDDQVEKFRKKFGELSQIMEIPVLKGEI 117

Query: 139 VIPSRR 144
           VIPSRR
Sbjct: 118 VIPSRR 123