Miyakogusa Predicted Gene
- Lj5g3v0091580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0091580.1 Non Characterized Hit- tr|Q8LBD4|Q8LBD4_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,50,2e-18,seg,NULL,gene.g58320.t1.1
(570 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 551 e-157
Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 444 e-124
Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 347 2e-95
Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 250 3e-66
>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902502-8910404 | 20130731
Length = 685
Score = 551 bits (1421), Expect = e-157, Method: Compositional matrix adjust.
Identities = 318/606 (52%), Positives = 380/606 (62%), Gaps = 67/606 (11%)
Query: 16 LWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHLNSQSERVESNKLSRSRRNK 75
LWDHL LN+ LYV+ ++LQDEAPKRKLISE++AG DG QH S+ ER SNK SRSR NK
Sbjct: 81 LWDHLHLNLALYVKPEKLQDEAPKRKLISEIKAGDDGLQHSKSELERGNSNKFSRSRHNK 140
Query: 76 DWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQSPPSPVQRKRRRSVDQQKTK 135
DWKGLV + EAP + + EVDN H+EEK RS VNR R SP VQRKR R+ +QQ+ K
Sbjct: 141 DWKGLVKGEAEAPTIRSFEVDNAHVEEKVRSNVNRSRRSPSPKPAVQRKRGRADEQQRPK 200
Query: 136 RDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXXXXXXXXXXXXXXXXXXXEHP 195
RD SQV I APRRLLQFAVRDAV + R GT VE EH
Sbjct: 201 RDVVSQVNIAAPRRLLQFAVRDAVGSPRTSGVGTSVEPYLKRLRSVVSTSSADSSVVEHY 260
Query: 196 QRMQ-TTRVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRLGCNINRSDGNRKLDDDYQHQ 254
QR+Q T+R N + V+KAV EAAED VK K SGSVFDRLGC ++ S N +L DYQHQ
Sbjct: 261 QRVQPTSRAPNAMARVIKAVAEAAED-VKSKSSGSVFDRLGCGMDSSADNSQL--DYQHQ 317
Query: 255 EQSQLLYLQRTDYGDQYAGNMSTFQHETAFLSDSTSDDEGFDDVNVMGHRVSRASQLGSS 314
EQ+Q +YLQRTDY QYA N + + ET FLSDS SD+EG DVNV+G V+ S++ SS
Sbjct: 318 EQNQSMYLQRTDYNGQYAANTTMVERETVFLSDSNSDNEGCHDVNVIGRGVTGTSEISSS 377
Query: 315 GGNRGDDSLMVHYSVAKNDDENVSLERNRDQEQSAVTPNTS-KIVNISVNVNTWKPPGPA 373
GN+G DSLMV YSVAK D+++ L+++++QEQ N S KIVNISVNVNTWKP
Sbjct: 378 VGNKGSDSLMVQYSVAKKADDSLRLKQSQEQEQPTAACNPSRKIVNISVNVNTWKPD--- 434
Query: 374 QCQEPRKVAELDGQKTLNSNIGAPRSDPRLVKENARALKTNHGNVSELYPGFEESASEGT 433
Q QEPR+V ELDG K ++ IG RS+ +LVKENA ALK ++GNV+ L P ++ +S+
Sbjct: 435 QYQEPREVVELDGHKISDNEIGDSRSNMQLVKENANALKISNGNVN-LAPDVQKESSKAH 493
Query: 434 T-------------IDCWAAYV-------------------------------------- 442
+D +V
Sbjct: 494 CTPGSSVAGRPTEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKG 553
Query: 443 ----EFMSKEAADNALSLDGTSFMSRILKVVRKSAAP--QEYAPALPWPRGVRGSPFPSA 496
EFM KEAADNALSLDGTSFMSRILKVV+KSAAP QE AP WP VRGSPFP+A
Sbjct: 554 AAYVEFMLKEAADNALSLDGTSFMSRILKVVKKSAAPAQQESAPTTTWPH-VRGSPFPTA 612
Query: 497 RFSRAPFPRGVVGAFSPRPPVKFGSRSLQWKRDAQGIXXXXXXXXXXXXXXXPGARGLTY 556
RF R PF RG+ G+F PRPP+K G+RS+QWKRDAQG P RGLTY
Sbjct: 613 RFPRPPFARGIPGSFRPRPPMKLGARSMQWKRDAQGSPADSGSSVNSGNFAMPATRGLTY 672
Query: 557 VRTESK 562
+RT SK
Sbjct: 673 IRTPSK 678
>Medtr3g028140.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8902513-8908790 | 20130731
Length = 582
Score = 444 bits (1141), Expect = e-124, Method: Compositional matrix adjust.
Identities = 262/509 (51%), Positives = 316/509 (62%), Gaps = 64/509 (12%)
Query: 16 LWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHLNSQSERVESNKLSRSRRNK 75
LWDHL LN+ LYV+ ++LQDEAPKRKLISE++AG DG QH S+ ER SNK SRSR NK
Sbjct: 81 LWDHLHLNLALYVKPEKLQDEAPKRKLISEIKAGDDGLQHSKSELERGNSNKFSRSRHNK 140
Query: 76 DWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQSPPSPVQRKRRRSVDQQKTK 135
DWKGLV + EAP + + EVDN H+EEK RS VNR R SP VQRKR R+ +QQ+ K
Sbjct: 141 DWKGLVKGEAEAPTIRSFEVDNAHVEEKVRSNVNRSRRSPSPKPAVQRKRGRADEQQRPK 200
Query: 136 RDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGTPVETXXXXXXXXXXXXXXXXXXXEHP 195
RD SQV I APRRLLQFAVRDAV + R GT VE EH
Sbjct: 201 RDVVSQVNIAAPRRLLQFAVRDAVGSPRTSGVGTSVEPYLKRLRSVVSTSSADSSVVEHY 260
Query: 196 QRMQ-TTRVANPTSTVLKAVPEAAEDAVKFKYSGSVFDRLGCNINRSDGNRKLDDDYQHQ 254
QR+Q T+R N + V+KAV EAAED VK K SGSVFDRLGC ++ S N +L DYQHQ
Sbjct: 261 QRVQPTSRAPNAMARVIKAVAEAAED-VKSKSSGSVFDRLGCGMDSSADNSQL--DYQHQ 317
Query: 255 EQSQLLYLQRTDYGDQYAGNMSTFQHETAFLSDSTSDDEGFDDVNVMGHRVSRASQLGSS 314
EQ+Q +YLQRTDY QYA N + + ET FLSDS SD+EG DVNV+G V+ S++ SS
Sbjct: 318 EQNQSMYLQRTDYNGQYAANTTMVERETVFLSDSNSDNEGCHDVNVIGRGVTGTSEISSS 377
Query: 315 GGNRGDDSLMVHYSVAKNDDENVSLERNRDQEQSAVTPNTS-KIVNISVNVNTWKPPGPA 373
GN+G DSLMV YSVAK D+++ L+++++QEQ N S KIVNISVNVNTWKP
Sbjct: 378 VGNKGSDSLMVQYSVAKKADDSLRLKQSQEQEQPTAACNPSRKIVNISVNVNTWKPD--- 434
Query: 374 QCQEPRKVAELDGQKTLNSNIGAPRSDPRLVKENARALKTNHGNVSELYPGFEESASEGT 433
Q QEPR+V ELDG K ++ IG RS+ +LVKENA ALK ++GNV+ L P ++ +S+
Sbjct: 435 QYQEPREVVELDGHKISDNEIGDSRSNMQLVKENANALKISNGNVN-LAPDVQKESSKAH 493
Query: 434 T-------------IDCWAAYV-------------------------------------- 442
+D +V
Sbjct: 494 CTPGSSVAGRPTEDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKG 553
Query: 443 ----EFMSKEAADNALSLDGTSFMSRILK 467
EFM KEAADNALSLDGTSFMSRILK
Sbjct: 554 AAYVEFMLKEAADNALSLDGTSFMSRILK 582
>Medtr8g037000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487363-13494759 | 20130731
Length = 815
Score = 347 bits (890), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/412 (48%), Positives = 234/412 (56%), Gaps = 91/412 (22%)
Query: 249 DDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFL----------------------- 285
+D Q+QE+S LY ++TDYGDQY NM+T HET F
Sbjct: 403 EDNQYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDFGDQ 462
Query: 286 ---------SDSTSDDEGFDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDEN 336
SDS+SD+EGFDDVN MG+RV R SQ SSGG RG+ SLM +YS AKNDD +
Sbjct: 463 YAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKNDD-S 521
Query: 337 VSLERNRDQEQSAVTPNTSKIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGA 396
+ L++NR+Q+QSA PN+SKIVNISVNVN W PP P Q +PRKVA+L G KTLNS A
Sbjct: 522 ILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGTRA 581
Query: 397 PRSDPRLVKENARALKTNHGNVSELY-------------PGFEESASEGTTIDC-----W 438
P+S +V ENA+ +K + G PG SA+ D +
Sbjct: 582 PKSGLSMVNENAKTVKIDSGKAKPTLDLLKVTQKAQPSTPGTGSSAASCPLDDADSRTIF 641
Query: 439 AAYVEF---------------------------------------MSKEAADNALSLDGT 459
A+ V F M KEAADNALSLDGT
Sbjct: 642 ASNVHFAATKDAICRHFNKFGEVLKAVIVTDSITGKPKGAAYVEFMYKEAADNALSLDGT 701
Query: 460 SFMSRILKVVRKSAAPQE-YAPALPWPRGVRGSPFPSARFSRAPFPRGVVGAFSPRPPVK 518
SFMSRILKVVRKS A QE YAPA+PWP GVRGSP+PSARF +AP P G GAF PRPPVK
Sbjct: 702 SFMSRILKVVRKSTAQQEDYAPAVPWPSGVRGSPYPSARFLKAPIPAGTAGAFRPRPPVK 761
Query: 519 FGSRSLQWKRDAQGIXXXXXXXXXXXXXXXPGARGLTYVRTESKLDASLNST 570
FG+RSLQWKRDAQG P +RGLTYVR ESKLD SL +T
Sbjct: 762 FGARSLQWKRDAQGTSSDNSATLNNSSISTPVSRGLTYVRPESKLDGSLGTT 813
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/310 (49%), Positives = 179/310 (57%), Gaps = 63/310 (20%)
Query: 14 SRLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHLNSQSERVESNKLSRSRR 73
S LWDHLALNIDLYVQSK LQDEAPK K++S+ QAG D FQ LN +SE V+S RSRR
Sbjct: 77 SWLWDHLALNIDLYVQSKGLQDEAPKSKVLSKAQAGDDDFQSLNQKSESVKS----RSRR 132
Query: 74 NKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQSPPSPVQRK--------- 124
NKDW GLVGRD EAP L + VDN+HL++KD+SKVN GP+ S PVQRK
Sbjct: 133 NKDWNGLVGRDAEAPPLLSFVVDNMHLDKKDQSKVNGGPKAPSLAPPVQRKKGCAVEQQK 192
Query: 125 -RRR--------------SVDQQKTKRDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGT 169
R+R +V+QQKTKRDS SQVTI APRRLLQFAVRDAVA+S N GT
Sbjct: 193 VRKRGCAVEQQKTMKRGCAVEQQKTKRDSVSQVTIDAPRRLLQFAVRDAVASS---NLGT 249
Query: 170 PVETXXXXXXXXXXXXXXXXXXXEHPQRMQTTRVANPTSTVLKAVPEAAEDAVKFKYSGS 229
VE EHP RMQT + VKFK SGS
Sbjct: 250 TVEPSLKRLRAAVSSSYVESSMVEHPHRMQTI-----------------SNLVKFKSSGS 292
Query: 230 VFDRLGCNINRSDGNRKLDD---------------DYQHQEQSQLLYLQRTDYGDQYAGN 274
FD + C+I S GN +L+D D Q+QE+S LY ++ DY DQYA N
Sbjct: 293 AFDPIDCDIYPSYGNVQLEDNQYQEESPYGNVQLEDNQYQEESPFLYHEKNDYDDQYAAN 352
Query: 275 MSTFQHETAF 284
M+ +ET F
Sbjct: 353 MTMLDYETGF 362
>Medtr8g037000.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr8:13487353-13490775 | 20130731
Length = 626
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 153/310 (49%), Positives = 179/310 (57%), Gaps = 63/310 (20%)
Query: 14 SRLWDHLALNIDLYVQSKELQDEAPKRKLISEVQAGGDGFQHLNSQSERVESNKLSRSRR 73
S LWDHLALNIDLYVQSK LQDEAPK K++S+ QAG D FQ LN +SE V+S RSRR
Sbjct: 77 SWLWDHLALNIDLYVQSKGLQDEAPKSKVLSKAQAGDDDFQSLNQKSESVKS----RSRR 132
Query: 74 NKDWKGLVGRDTEAPYLWNSEVDNVHLEEKDRSKVNRGPRLQSPPSPVQRK--------- 124
NKDW GLVGRD EAP L + VDN+HL++KD+SKVN GP+ S PVQRK
Sbjct: 133 NKDWNGLVGRDAEAPPLLSFVVDNMHLDKKDQSKVNGGPKAPSLAPPVQRKKGCAVEQQK 192
Query: 125 -RRR--------------SVDQQKTKRDSGSQVTIHAPRRLLQFAVRDAVATSRPYNSGT 169
R+R +V+QQKTKRDS SQVTI APRRLLQFAVRDAVA+S N GT
Sbjct: 193 VRKRGCAVEQQKTMKRGCAVEQQKTKRDSVSQVTIDAPRRLLQFAVRDAVASS---NLGT 249
Query: 170 PVETXXXXXXXXXXXXXXXXXXXEHPQRMQTTRVANPTSTVLKAVPEAAEDAVKFKYSGS 229
VE EHP RMQT + VKFK SGS
Sbjct: 250 TVEPSLKRLRAAVSSSYVESSMVEHPHRMQTI-----------------SNLVKFKSSGS 292
Query: 230 VFDRLGCNINRSDGNRKLDD---------------DYQHQEQSQLLYLQRTDYGDQYAGN 274
FD + C+I S GN +L+D D Q+QE+S LY ++ DY DQYA N
Sbjct: 293 AFDPIDCDIYPSYGNVQLEDNQYQEESPYGNVQLEDNQYQEESPFLYHEKNDYDDQYAAN 352
Query: 275 MSTFQHETAF 284
M+ +ET F
Sbjct: 353 MTMLDYETGF 362
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 127/200 (63%), Gaps = 33/200 (16%)
Query: 249 DDYQHQEQSQLLYLQRTDYGDQYAGNMSTFQHETAFL----------------------- 285
+D Q+QE+S LY ++TDYGDQY NM+T HET F
Sbjct: 403 EDNQYQEESSFLYHEKTDYGDQYPANMTTLDHETGFQFEDNQYEEESPFLYHEKNDFGDQ 462
Query: 286 ---------SDSTSDDEGFDDVNVMGHRVSRASQLGSSGGNRGDDSLMVHYSVAKNDDEN 336
SDS+SD+EGFDDVN MG+RV R SQ SSGG RG+ SLM +YS AKNDD +
Sbjct: 463 YAANMTGVPSDSSSDNEGFDDVNFMGNRVGRVSQFSSSGGKRGEYSLMGNYSAAKNDD-S 521
Query: 337 VSLERNRDQEQSAVTPNTSKIVNISVNVNTWKPPGPAQCQEPRKVAELDGQKTLNSNIGA 396
+ L++NR+Q+QSA PN+SKIVNISVNVN W PP P Q +PRKVA+L G KTLNS A
Sbjct: 522 ILLKKNRNQDQSAAAPNSSKIVNISVNVNAWNPPVPKQYAKPRKVADLSGHKTLNSGTRA 581
Query: 397 PRSDPRLVKENARALKTNHG 416
P+S +V ENA+ +K + G
Sbjct: 582 PKSGLSMVNENAKTVKIDSG 601