Miyakogusa Predicted Gene

Lj5g3v0087400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0087400.1 Non Characterized Hit- tr|Q650V5|Q650V5_ORYSJ
Putative KIAA protein OS=Oryza sativa subsp. japonica
,54.64,8e-18,seg,NULL,NODE_67294_length_463_cov_61.784016.path1.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g103840.1 | ENTH/VHS-like protein | HC | chr7:41991606-419...   137   2e-33
Medtr7g103840.2 | ENTH/VHS-like protein | HC | chr7:41991161-419...   137   2e-33
Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC ...   132   5e-32
Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC ...   132   5e-32
Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC ...   132   5e-32

>Medtr7g103840.1 | ENTH/VHS-like protein | HC |
           chr7:41991606-41997500 | 20130731
          Length = 1029

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 1   MRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGXXXXXXXXXXXXXXXXXXXXIHVNPKYL 60
           MRHLFGTWRGVFP QTLQ IEKEL F PAVNG                    IHVNPKYL
Sbjct: 178 MRHLFGTWRGVFPPQTLQIIEKELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYL 237

Query: 61  ERQRLQQSSRTKGV-DDMSGAIANSNDDPEMPDRALGVKRPRADP 104
           ERQRLQQSSRTKGV DDM+G I+N+N+  E PDRALG  RP  DP
Sbjct: 238 ERQRLQQSSRTKGVFDDMAGVISNANEGAERPDRALGAARPWLDP 282


>Medtr7g103840.2 | ENTH/VHS-like protein | HC |
           chr7:41991161-41998262 | 20130731
          Length = 1028

 Score =  137 bits (345), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 1   MRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGXXXXXXXXXXXXXXXXXXXXIHVNPKYL 60
           MRHLFGTWRGVFP QTLQ IEKEL F PAVNG                    IHVNPKYL
Sbjct: 180 MRHLFGTWRGVFPPQTLQIIEKELNFNPAVNGSASASATLRSDSQSQRPSHSIHVNPKYL 239

Query: 61  ERQRLQQSSRTKGV-DDMSGAIANSNDDPEMPDRALGVKRPRADP 104
           ERQRLQQSSRTKGV DDM+G I+N+N+  E PDRALG  RP  DP
Sbjct: 240 ERQRLQQSSRTKGVFDDMAGVISNANEGAERPDRALGAARPWLDP 284


>Medtr1g061130.3 | RNA polymerase II-binding domain protein | HC |
           chr1:26672968-26665965 | 20130731
          Length = 1041

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 1   MRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGXXXXXXXXXXXXXXXXXXXXIHVNPKYL 60
           M+HLFGTW+GVFP QTLQ I+KELGFTP +NG                    IHVNPKY 
Sbjct: 179 MKHLFGTWKGVFPPQTLQIIDKELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYF 238

Query: 61  ERQRLQQSSRTKG-VDDMSGAIANSNDDPEMPDRALGVKR 99
           ERQRLQQSSRTKG V DM+GAIANSNDD EM DR LGV R
Sbjct: 239 ERQRLQQSSRTKGVVGDMTGAIANSNDDHEMTDRDLGVAR 278


>Medtr1g061130.1 | RNA polymerase II-binding domain protein | HC |
           chr1:26672968-26665891 | 20130731
          Length = 1021

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 1   MRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGXXXXXXXXXXXXXXXXXXXXIHVNPKYL 60
           M+HLFGTW+GVFP QTLQ I+KELGFTP +NG                    IHVNPKY 
Sbjct: 179 MKHLFGTWKGVFPPQTLQIIDKELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYF 238

Query: 61  ERQRLQQSSRTKG-VDDMSGAIANSNDDPEMPDRALGVKR 99
           ERQRLQQSSRTKG V DM+GAIANSNDD EM DR LGV R
Sbjct: 239 ERQRLQQSSRTKGVVGDMTGAIANSNDDHEMTDRDLGVAR 278


>Medtr1g061130.2 | RNA polymerase II-binding domain protein | HC |
           chr1:26672968-26665891 | 20130731
          Length = 1021

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 70/100 (70%), Gaps = 1/100 (1%)

Query: 1   MRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGXXXXXXXXXXXXXXXXXXXXIHVNPKYL 60
           M+HLFGTW+GVFP QTLQ I+KELGFTP +NG                    IHVNPKY 
Sbjct: 179 MKHLFGTWKGVFPPQTLQIIDKELGFTPVINGSSSASTALRSDSQSKHSPHSIHVNPKYF 238

Query: 61  ERQRLQQSSRTKG-VDDMSGAIANSNDDPEMPDRALGVKR 99
           ERQRLQQSSRTKG V DM+GAIANSNDD EM DR LGV R
Sbjct: 239 ERQRLQQSSRTKGVVGDMTGAIANSNDDHEMTDRDLGVAR 278