Miyakogusa Predicted Gene
- Lj5g3v0086230.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0086230.1 Non Characterized Hit- tr|I1M8F2|I1M8F2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45814
PE,76.37,0,seg,NULL; PEROXISOMAL BIOGENESIS FACTOR 11,Peroxisomal
biogenesis factor 11; PEX11,Peroxisomal bioge,CUFF.52501.1
(266 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protei... 313 1e-85
Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family prote... 70 2e-12
Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protei... 55 7e-08
Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protei... 55 7e-08
Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protei... 55 7e-08
>Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protein |
HC | chr1:6736189-6737364 | 20130731
Length = 261
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/237 (67%), Positives = 180/237 (75%), Gaps = 4/237 (1%)
Query: 32 KRDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVS 91
+RDFL H E YLAKRDGVDKLLKISRYT KL+LAS NL SD NL+ RLK+FESSVGVS
Sbjct: 27 ERDFLTHFETYLAKRDGVDKLLKISRYTAKLILAS--NLSASDPNLTHRLKSFESSVGVS 84
Query: 92 RKAFRLGKFVQDLNALGAS--DPKRDLVFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHS 149
RKAFRLGKFVQDLNAL + D RDL+FS IAYGGEGFY+F+EQFVWL+K+GLIDPK S
Sbjct: 85 RKAFRLGKFVQDLNALRNTRVDSTRDLIFSFIAYGGEGFYFFIEQFVWLSKTGLIDPKRS 144
Query: 150 RTLGKISAWAEFVGYFGSIALKLRDLRLIIEDEACLQSSVEIAGLRGVXXXXXXXXXXXX 209
+T KISA+AEF+GYFGSIALK RDL++I+EDEACL+SS+EI LRG
Sbjct: 145 KTFTKISAYAEFIGYFGSIALKTRDLKIIVEDEACLKSSIEINVLRGDGCGEEEIKLRKL 204
Query: 210 XXXXXMKQLSVVQDLADGLMALDDILDGKAPFSKPXXXXXXXXXXXXXXTHKNWVSC 266
MK+LS+VQDLADGLMALDDILDGK FSKP THKNWVSC
Sbjct: 205 REKILMKKLSIVQDLADGLMALDDILDGKGLFSKPIVLSSAGLLSALISTHKNWVSC 261
>Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family protein
| HC | scaffold0004:218301-217599 | 20130731
Length = 212
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%)
Query: 34 DFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRK 93
D ++ + +LAKRDG+DKL K + + Q K + G+SRK
Sbjct: 3 DTVDKLVIFLAKRDGIDKLEKTFQEDIPICF--------------QACKLACGTSGLSRK 48
Query: 94 AFRLGKFVQDLNALGASDPKRDL---VFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHSR 150
AFR G+F+ NAL +P L + +V++ GE Y+F + F+WL++ G +D ++
Sbjct: 49 AFRTGRFLTGFNAL-RRNPGSTLTLRLLAVLSNSGEMVYFFFDHFLWLSRIGTVDANLAK 107
Query: 151 TLGKISAWAEFVGY 164
+ ISA+ E VGY
Sbjct: 108 KMSFISAFGEAVGY 121
>Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protein |
HC | chr7:28662000-28657039 | 20130731
Length = 236
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 42 YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
YL K + DK+ + +Y +K L P + + + + ++RK FRL KFV
Sbjct: 17 YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66
Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
DL+AL + P+ +I G + F++QFVWL ++G+ID K L G+I
Sbjct: 67 NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125
Query: 156 SAWA 159
S +
Sbjct: 126 SLYC 129
>Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protein |
HC | chr7:28661674-28657111 | 20130731
Length = 236
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 42 YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
YL K + DK+ + +Y +K L P + + + + ++RK FRL KFV
Sbjct: 17 YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66
Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
DL+AL + P+ +I G + F++QFVWL ++G+ID K L G+I
Sbjct: 67 NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125
Query: 156 SAWA 159
S +
Sbjct: 126 SLYC 129
>Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protein |
HC | chr7:28661672-28657111 | 20130731
Length = 236
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 42 YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
YL K + DK+ + +Y +K L P + + + + ++RK FRL KFV
Sbjct: 17 YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66
Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
DL+AL + P+ +I G + F++QFVWL ++G+ID K L G+I
Sbjct: 67 NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125
Query: 156 SAWA 159
S +
Sbjct: 126 SLYC 129