Miyakogusa Predicted Gene

Lj5g3v0086230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0086230.1 Non Characterized Hit- tr|I1M8F2|I1M8F2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.45814
PE,76.37,0,seg,NULL; PEROXISOMAL BIOGENESIS FACTOR 11,Peroxisomal
biogenesis factor 11; PEX11,Peroxisomal bioge,CUFF.52501.1
         (266 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protei...   313   1e-85
Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family prote...    70   2e-12
Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protei...    55   7e-08
Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protei...    55   7e-08
Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protei...    55   7e-08

>Medtr1g021995.1 | peroxisomal biogenesis factor 11 family protein |
           HC | chr1:6736189-6737364 | 20130731
          Length = 261

 Score =  313 bits (801), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/237 (67%), Positives = 180/237 (75%), Gaps = 4/237 (1%)

Query: 32  KRDFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVS 91
           +RDFL H E YLAKRDGVDKLLKISRYT KL+LAS  NL  SD NL+ RLK+FESSVGVS
Sbjct: 27  ERDFLTHFETYLAKRDGVDKLLKISRYTAKLILAS--NLSASDPNLTHRLKSFESSVGVS 84

Query: 92  RKAFRLGKFVQDLNALGAS--DPKRDLVFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHS 149
           RKAFRLGKFVQDLNAL  +  D  RDL+FS IAYGGEGFY+F+EQFVWL+K+GLIDPK S
Sbjct: 85  RKAFRLGKFVQDLNALRNTRVDSTRDLIFSFIAYGGEGFYFFIEQFVWLSKTGLIDPKRS 144

Query: 150 RTLGKISAWAEFVGYFGSIALKLRDLRLIIEDEACLQSSVEIAGLRGVXXXXXXXXXXXX 209
           +T  KISA+AEF+GYFGSIALK RDL++I+EDEACL+SS+EI  LRG             
Sbjct: 145 KTFTKISAYAEFIGYFGSIALKTRDLKIIVEDEACLKSSIEINVLRGDGCGEEEIKLRKL 204

Query: 210 XXXXXMKQLSVVQDLADGLMALDDILDGKAPFSKPXXXXXXXXXXXXXXTHKNWVSC 266
                MK+LS+VQDLADGLMALDDILDGK  FSKP              THKNWVSC
Sbjct: 205 REKILMKKLSIVQDLADGLMALDDILDGKGLFSKPIVLSSAGLLSALISTHKNWVSC 261


>Medtr0004s0440.1 | peroxisomal biogenesis factor 11 family protein
           | HC | scaffold0004:218301-217599 | 20130731
          Length = 212

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 18/134 (13%)

Query: 34  DFLNHVEAYLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRK 93
           D ++ +  +LAKRDG+DKL K  +    +                Q  K    + G+SRK
Sbjct: 3   DTVDKLVIFLAKRDGIDKLEKTFQEDIPICF--------------QACKLACGTSGLSRK 48

Query: 94  AFRLGKFVQDLNALGASDPKRDL---VFSVIAYGGEGFYYFVEQFVWLAKSGLIDPKHSR 150
           AFR G+F+   NAL   +P   L   + +V++  GE  Y+F + F+WL++ G +D   ++
Sbjct: 49  AFRTGRFLTGFNAL-RRNPGSTLTLRLLAVLSNSGEMVYFFFDHFLWLSRIGTVDANLAK 107

Query: 151 TLGKISAWAEFVGY 164
            +  ISA+ E VGY
Sbjct: 108 KMSFISAFGEAVGY 121


>Medtr7g076200.2 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28662000-28657039 | 20130731
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 42  YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
           YL K +  DK+ +  +Y +K L    P           + +  + +  ++RK FRL KFV
Sbjct: 17  YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66

Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
            DL+AL +  P+      +I  G         + F++QFVWL ++G+ID K    L G+I
Sbjct: 67  NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125

Query: 156 SAWA 159
           S + 
Sbjct: 126 SLYC 129


>Medtr7g076200.1 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28661674-28657111 | 20130731
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 42  YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
           YL K +  DK+ +  +Y +K L    P           + +  + +  ++RK FRL KFV
Sbjct: 17  YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66

Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
            DL+AL +  P+      +I  G         + F++QFVWL ++G+ID K    L G+I
Sbjct: 67  NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125

Query: 156 SAWA 159
           S + 
Sbjct: 126 SLYC 129


>Medtr7g076200.3 | peroxisomal biogenesis factor 11 family protein |
           HC | chr7:28661672-28657111 | 20130731
          Length = 236

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 42  YLAKRDGVDKLLKISRYTTKLLLASSPNLLRSDTNLSQRLKAFESSVGVSRKAFRLGKFV 101
           YL K +  DK+ +  +Y +K L    P           + +  + +  ++RK FRL KFV
Sbjct: 17  YLNKAEARDKICRAIQYGSKFLSNGEPG----------KAQNVDKTTSLARKVFRLFKFV 66

Query: 102 QDLNALGASDPKRDLVFSVIAYGGE-----GFYYFVEQFVWLAKSGLIDPKHSRTL-GKI 155
            DL+AL +  P+      +I  G         + F++QFVWL ++G+ID K    L G+I
Sbjct: 67  NDLHALISPSPQ-GTPLPLILLGKSKNALLSTFLFLDQFVWLGRTGVIDNKERTELVGRI 125

Query: 156 SAWA 159
           S + 
Sbjct: 126 SLYC 129