Miyakogusa Predicted Gene

Lj5g3v0086210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0086210.2 Non Characterized Hit- tr|K4A7I1|K4A7I1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si034837,38.69,1e-16,seg,NULL,CUFF.52502.2
         (235 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g021985.1 | methyltransferase-like protein | HC | chr1:672...   249   2e-66

>Medtr1g021985.1 | methyltransferase-like protein | HC |
           chr1:6727334-6731532 | 20130731
          Length = 422

 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/230 (62%), Positives = 162/230 (70%), Gaps = 20/230 (8%)

Query: 1   MEDSQKLSQFHETGVYHFDDSNAVVFVDPVRVLNRSYNRFTVSPSTYYPRFFESPNPKPL 60
           MEDSQKLS FH++GVY+F DSN V F+DPVRVLNR YNRFTVSPSTYYPRFF+S  PK  
Sbjct: 1   MEDSQKLSLFHKSGVYNFKDSNTV-FIDPVRVLNRFYNRFTVSPSTYYPRFFKSLTPK-- 57

Query: 61  STVATSSSPTXXXXXXXXXXXXXQPPPLNHRERIALQRHQEARPLLLKAHECLLKSIRLL 120
                 SSPT             +  PLN RE+IALQRHQE RPLL+KAHECLLKS  LL
Sbjct: 58  --TTVPSSPTKRKRKKRKRCSE-ESRPLNDREQIALQRHQELRPLLMKAHECLLKSNGLL 114

Query: 121 GAMSTLR--SDSSCLK-ECLSGQHSKHSFVELGELIPSLEVTLNLRLGDSDTDPHQKLND 177
           GA+  LR  SDS CLK EC  G+     FVELG+  P L VTLNL + D D        D
Sbjct: 115 GALKDLRSESDSCCLKEECECGE---QCFVELGQQAPDLVVTLNLCIRDID-------KD 164

Query: 178 LEDSPSVQCYEQR-VLPAFNNLVANDTKDDAVAEILSNNYIMPRESCFYM 226
           +EDSP+VQ  EQR +LP FNN V NDT+DDA+AEIL+N+YIMPRESCFYM
Sbjct: 165 MEDSPNVQYCEQRSILPVFNNFVVNDTEDDAMAEILNNHYIMPRESCFYM 214