Miyakogusa Predicted Gene

Lj5g3v0080880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0080880.1 Non Characterized Hit- tr|Q8LCG5|Q8LCG5_ARATH
Putative uncharacterized protein OS=Arabidopsis
thalia,54.87,2e-19,seg,NULL,CUFF.52474.1
         (159 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g009780.1 | hypothetical protein | HC | chr1:1513775-15168...   161   2e-40
Medtr3g080910.1 | hypothetical protein | HC | chr3:36614102-3661...   112   2e-25
Medtr3g080930.1 | hypothetical protein | HC | chr3:36618521-3661...    66   1e-11

>Medtr1g009780.1 | hypothetical protein | HC | chr1:1513775-1516852
           | 20130731
          Length = 200

 Score =  161 bits (408), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 86/130 (66%), Positives = 97/130 (74%), Gaps = 3/130 (2%)

Query: 1   MAERSKELLQFEHKDLPFSSTESALLVCD-NKRESKRIPSNGSLKTAPVPPSQLLGKVRD 59
           MAERSKELLQ E K  P SS ES LLVCD NK+ES  +     L T+P+PPSQLLGKV+D
Sbjct: 1   MAERSKELLQLERKGTPLSSLESTLLVCDSNKKESNNLTKR--LSTSPLPPSQLLGKVKD 58

Query: 60  FLGVMSEANKRLELDAKDHPENYNIEELTGNESQVIEMDLMLGVADLHTPXXXXXXXXXX 119
           FLGVMSEANK+LE DAK+HPE Y+IE LTGNES+VIEMDLMLGVADL+TP          
Sbjct: 59  FLGVMSEANKQLEHDAKEHPEKYDIEGLTGNESEVIEMDLMLGVADLNTPEAVAAAESAI 118

Query: 120 XXHEPVIPLA 129
              +PVI LA
Sbjct: 119 SNSQPVISLA 128


>Medtr3g080910.1 | hypothetical protein | HC |
           chr3:36614102-36613343 | 20130731
          Length = 164

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/78 (70%), Positives = 61/78 (78%)

Query: 52  QLLGKVRDFLGVMSEANKRLELDAKDHPENYNIEELTGNESQVIEMDLMLGVADLHTPXX 111
           ++LGKV+DFLGVMSEANKRLE DAKDHPE Y+ EELTGNES+VIEMDLMLGVADLHTP  
Sbjct: 14  EVLGKVKDFLGVMSEANKRLEHDAKDHPEKYDFEELTGNESEVIEMDLMLGVADLHTPEA 73

Query: 112 XXXXXXXXXXHEPVIPLA 129
                      +PVI LA
Sbjct: 74  VAAAESAVSSCQPVISLA 91


>Medtr3g080930.1 | hypothetical protein | HC |
          chr3:36618521-36618186 | 20130731
          Length = 67

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%), Gaps = 4/55 (7%)

Query: 2  AERSKELLQFEHKDLPFSSTESALLVCDNKRE----SKRIPSNGSLKTAPVPPSQ 52
           +RSKELL+ EHKD PFSS E+ LLVCDN +E    +KR P +G+  TAP+PPSQ
Sbjct: 3  GDRSKELLRLEHKDTPFSSLETTLLVCDNNKELNSQTKRSPFDGTSLTAPLPPSQ 57