Miyakogusa Predicted Gene
- Lj5g3v0035410.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0035410.2 tr|D7KAU1|D7KAU1_ARALL ATRBP47C OS=Arabidopsis
lyrata subsp. lyrata GN=ARALYDRAFT_473892 PE=4
SV=1,26.56,0.00000000009,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.2
(314 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 501 e-142
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 489 e-138
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 384 e-107
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 348 5e-96
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 338 6e-93
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 325 4e-89
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 320 1e-87
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 293 2e-79
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 226 2e-59
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 226 2e-59
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 225 5e-59
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 127 1e-29
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 127 1e-29
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 127 1e-29
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 122 6e-28
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 117 2e-26
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 110 1e-24
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 99 7e-21
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 98 1e-20
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 97 2e-20
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 97 2e-20
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 94 1e-19
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 94 1e-19
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 92 5e-19
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 88 1e-17
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 80 2e-15
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 8e-15
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 76 4e-14
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 74 2e-13
Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35... 70 3e-12
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 4e-12
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 1e-11
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 68 1e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 2e-11
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 67 2e-11
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 67 2e-11
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 2e-10
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 64 2e-10
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 3e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 62 6e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 62 8e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 62 8e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 61 2e-09
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 3e-09
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 4e-09
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 8e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 8e-09
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 2e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 57 2e-08
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 57 2e-08
Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like pro... 56 5e-08
Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like pro... 56 6e-08
Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like pro... 56 6e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 6e-08
Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like pro... 55 7e-08
Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like pro... 55 7e-08
Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like pro... 55 1e-07
Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like pro... 55 1e-07
Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like pro... 55 1e-07
Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like pro... 55 1e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 1e-07
Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like pro... 55 1e-07
Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like pro... 54 1e-07
Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like pro... 54 1e-07
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr8g070490.1 | RNA recognition motif (RRM) containing protein... 53 4e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 51 1e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 51 1e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 50 3e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 50 4e-06
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 1e-05
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 501 bits (1289), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/298 (80%), Positives = 262/298 (87%), Gaps = 2/298 (0%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDE+YLHRCFASTGEI+S+KVIRNK +G+SEGYGF EF+SHATAEKVLQNYAG+LMPN D
Sbjct: 108 MDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNAD 167
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q FRLNWATFSTG+K SDNV+DLSIFVGDLAADVTDS+LHETF+S YPSVKAAKVV+DAN
Sbjct: 168 QAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDAN 227
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
TGRSKGYGFVRFGD++ERSQAMTQMNGVYCSSRPMRIGAATPRK
Sbjct: 228 TGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQ 287
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
E+DSTNTTIFVGGLD NVT+EDL+Q FSQYGEI SVKIPVGKGCGFVQFANRNNAEEAL
Sbjct: 288 SEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEAL 347
Query: 241 QKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALPPP-HDP 297
QKLNGT IGKQTVRLSWGRNPA KQ R+D GS W G Y+ +P+YDGYGYA+P P HDP
Sbjct: 348 QKLNGTMIGKQTVRLSWGRNPAYKQFRLDVGS-WAGPYFPSPIYDGYGYAMPSPHHDP 404
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 30/202 (14%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 138
N + ++++GDL + + +S LH FAS + + KV+ + ++G S+GYGF F
Sbjct: 93 NGENKTLWIGDLHSWMDESYLHRCFAST-GEITSVKVIRNKHSGISEGYGFAEFFSHATA 151
Query: 139 SQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLD 196
+ + G+ + + R+ AT + T+ +IFVG L
Sbjct: 152 EKVLQNYAGILMPNADQAFRLNWAT-------------FSTGDKGSDNVTDLSIFVGDLA 198
Query: 197 PNVTEEDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT--- 246
+VT+ L + F S Y + + K+ KG GFV+F + + +A+ ++NG
Sbjct: 199 ADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCS 258
Query: 247 ----TIGKQTVRLSWGRNPANK 264
IG T R S G P +
Sbjct: 259 SRPMRIGAATPRKSSGHQPGGQ 280
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 489 bits (1260), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/298 (80%), Positives = 257/298 (86%), Gaps = 2/298 (0%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYLHRCFASTGEI SIKVIRNKQT +EGYGFVEF SH TAEKVLQ YAG+LMPNT+
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 61 QPFRLNWATFSTGE-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
QPFRLNWATFSTG+ K SDNV DLSIFVGDLAADVTD++L ETF+ YPSVKAAKVVFDA
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX 179
NTGRSKGYGFVRFGDD ERS+A+ +MNGV+CSSR MRIGAATPRK
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 180 XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEA 239
++DSTNTTIFVGGLDP+ T EDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEA
Sbjct: 284 QSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEA 343
Query: 240 LQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGG-AYYGAPVYDGYGYALPPPHD 296
LQKLNGTT+GKQTVRLSWGRNPANKQ R +FGSPW G AYYG P YDGYGYA+P P+D
Sbjct: 344 LQKLNGTTVGKQTVRLSWGRNPANKQFRSEFGSPWNGPAYYGGPAYDGYGYAMPHPYD 401
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 27/193 (13%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
G +DN + ++VGDL + ++ LH FAS + + KV+ + T +++GYGFV F
Sbjct: 86 GSSAADNKT---LWVGDLHHWMDENYLHRCFAST-GEIFSIKVIRNKQTCQTEGYGFVEF 141
Query: 133 GDDNERSQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDST-NTT 189
+ + G+ + +P R+ AT SD+ + +
Sbjct: 142 TSHGTAEKVLQTYAGMLMPNTEQPFRLNWAT-------------FSTGDHKRSDNVPDLS 188
Query: 190 IFVGGLDPNVTEEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQK 242
IFVG L +VT+ L + FS +Y + + K+ KG GFV+F + +AL +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 243 LNGTTIGKQTVRL 255
+NG + +R+
Sbjct: 249 MNGVFCSSRAMRI 261
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 384 bits (987), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/289 (64%), Positives = 220/289 (76%), Gaps = 20/289 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDE +LH CFA TGE++S KVIRNKQTG SEGYGFVEFY+ A AEKVLQN+ G +MPNTD
Sbjct: 127 MDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTD 186
Query: 61 QPFRLNWATFST----GEK-TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKV 115
Q FRLNWATFS GE+ +S+ SDLS+FVGDLA DVTD++L ETFAS + S+K AKV
Sbjct: 187 QAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKV 246
Query: 116 VFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK----------- 164
V D+NTGRSKGYGFVRFGD++ER++AMT+MNGVYCSSRPMR+G ATP+K
Sbjct: 247 VIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQ 306
Query: 165 ----XXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP 220
E DS NTTIFVGGLD ++++EDLRQPF Q+G+++SVKIP
Sbjct: 307 AVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIP 366
Query: 221 VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMD 269
VGKGCGFVQ A+R NAEEA+Q LNGT IGKQTVRLSWGR+P NK R D
Sbjct: 367 VGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHGRND 415
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
+I++GDL + ++ LH FA V +AKV+ + TG+S+GYGFV F + +
Sbjct: 117 TIWLGDLHHWMDETFLHNCFAHT-GEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 144 QMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
NG + + R+ AT +++ ++FVG L +VT+
Sbjct: 176 NFNGTMMPNTDQAFRLNWAT--------FSAAGGGGERRSSEATSDLSVFVGDLAIDVTD 227
Query: 202 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 254
L++ F S++ I K+ + KG GFV+F + + A+ ++NG + +R
Sbjct: 228 AMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMR 287
Query: 255 L 255
+
Sbjct: 288 V 288
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 348 bits (892), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/303 (59%), Positives = 217/303 (71%), Gaps = 7/303 (2%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL+ CF+ TGE+ S+KVIRNKQT SEGYGF+EF S A AE+VLQ + G +MPN
Sbjct: 85 MDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTFNGTIMPNGG 144
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q FRLNWATFS+GEK D+ D +IFVGDLAADV+D L E F + Y SVK AKVV D
Sbjct: 145 QNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRT 204
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX-- 178
TGR+KGYGFVRF D++E+ +AMT+M GV CS+RPMRIG A+ +
Sbjct: 205 TGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGG 264
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEE 238
E+D NTTIFVG LDPNVT+E L+Q F+QYGE+V VKIP GK CGFVQFA+R++AEE
Sbjct: 265 AQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEE 324
Query: 239 ALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGG--AYYG--APVYDGYGYALPPP 294
AL+ LNGT +G Q VRLSWGR+PANKQ + D + W G +Y+G A Y+ Y YA P
Sbjct: 325 ALRVLNGTLLGGQNVRLSWGRSPANKQTQQD-PNQWNGSSSYFGGYAQGYENYAYAPPAG 383
Query: 295 HDP 297
DP
Sbjct: 384 QDP 386
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 338 bits (866), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 169/272 (62%), Positives = 203/272 (74%), Gaps = 3/272 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+VLQ Y G +MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF + Y SVK AKVV D
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXX-XXX 177
TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT +
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPS 250
Query: 178 XXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAE 237
E+D NTTIFVG LDPNVT++ LRQ F+QYGE+V VKIP GK CGFVQF++R+ AE
Sbjct: 251 GGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDRSCAE 310
Query: 238 EALQKLNGTTIGKQTVRLSWGRNPANKQIRMD 269
EA++ LNGT +G Q VRLSWGR P+NKQ + D
Sbjct: 311 EAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQD 342
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 325 bits (833), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 169/317 (53%), Positives = 207/317 (65%), Gaps = 28/317 (8%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+DENYL CF+ TGE+ SIK+IRNK TG EGYGF+EF SH+ AE+VLQ Y G MP T+
Sbjct: 26 VDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTYNGTQMPGTE 85
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q FRLNWA+F GE+ D D SIFVGDLA DVTD LL ETF + Y SV+ AKVV D N
Sbjct: 86 QTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPN 145
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXX--------- 171
TGRSKGYGFV+F D++ER++AM++MNGVYCS+RPMRI AATP+K
Sbjct: 146 TGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAA 205
Query: 172 ------------XXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI 219
PE D NTTI+VG LD NV+EE+L+Q F Q+GEIVSVK+
Sbjct: 206 PVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKV 265
Query: 220 PVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR-NPANKQIRMDFG-----SP 273
GK CGFVQF R +AEEA+QK+ G +G+Q +R+SWGR A + + +G S
Sbjct: 266 HPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTARQDVPGGWGQQVDQSQ 325
Query: 274 WGGAY-YGAPVYDGYGY 289
W Y YG P Y+ Y Y
Sbjct: 326 WSAYYGYGQPGYEAYAY 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRN 234
P S T+++G L V E L FS GE++S+KI K G GF++F + +
Sbjct: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
Query: 235 NAEEALQKLNGTTI--GKQTVRLSWG 258
AE LQ NGT + +QT RL+W
Sbjct: 68 AAERVLQTYNGTQMPGTEQTFRLNWA 93
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/195 (77%), Positives = 168/195 (86%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDE+YLHRCFASTGEI+S+KVIRNK +G+SEGYGF EF+SHATAEKVLQNYAG+LMPN D
Sbjct: 108 MDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNAD 167
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q FRLNWATFSTG+K SDNV+DLSIFVGDLAADVTDS+LHETF+S YPSVKAAKVV+DAN
Sbjct: 168 QAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDAN 227
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
TGRSKGYGFVRFGD++ERSQAMTQMNGVYCSSRPMRIGAATPRK
Sbjct: 228 TGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQ 287
Query: 181 PESDSTNTTIFVGGL 195
E+DSTNTT+ L
Sbjct: 288 SEADSTNTTVSFSAL 302
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 30/202 (14%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 138
N + ++++GDL + + +S LH FAS + + KV+ + ++G S+GYGF F
Sbjct: 93 NGENKTLWIGDLHSWMDESYLHRCFAST-GEITSVKVIRNKHSGISEGYGFAEFFSHATA 151
Query: 139 SQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLD 196
+ + G+ + + R+ AT + T+ +IFVG L
Sbjct: 152 EKVLQNYAGILMPNADQAFRLNWAT-------------FSTGDKGSDNVTDLSIFVGDLA 198
Query: 197 PNVTEEDLRQPFSQ-YGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT--- 246
+VT+ L + FS Y + + K+ KG GFV+F + + +A+ ++NG
Sbjct: 199 ADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCS 258
Query: 247 ----TIGKQTVRLSWGRNPANK 264
IG T R S G P +
Sbjct: 259 SRPMRIGAATPRKSSGHQPGGQ 280
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 1/191 (0%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYLHRCFASTGEI SIKVIRNKQT +EGYGFVEF SH TAEKVLQ YAG+LMPNT+
Sbjct: 104 MDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTE 163
Query: 61 QPFRLNWATFSTGE-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA 119
QPFRLNWATFSTG+ K SDNV DLSIFVGDLAADVTD++L ETF+ YPSVKAAKVVFDA
Sbjct: 164 QPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA 223
Query: 120 NTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX 179
NTGRSKGYGFVRFGDD ERS+A+ +MNGV+CSSR MRIGAATPRK
Sbjct: 224 NTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPS 283
Query: 180 XPESDSTNTTI 190
++DSTNTT+
Sbjct: 284 QSDTDSTNTTV 294
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 27/193 (13%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
G +DN + ++VGDL + ++ LH FAS + + KV+ + T +++GYGFV F
Sbjct: 86 GSSAADNKT---LWVGDLHHWMDENYLHRCFAST-GEIFSIKVIRNKQTCQTEGYGFVEF 141
Query: 133 GDDNERSQAMTQMNGVYC--SSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDST-NTT 189
+ + G+ + +P R+ AT SD+ + +
Sbjct: 142 TSHGTAEKVLQTYAGMLMPNTEQPFRLNWAT-------------FSTGDHKRSDNVPDLS 188
Query: 190 IFVGGLDPNVTEEDLRQPFS-QYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQK 242
IFVG L +VT+ L + FS +Y + + K+ KG GFV+F + +AL +
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 243 LNGTTIGKQTVRL 255
+NG + +R+
Sbjct: 249 MNGVFCSSRAMRI 261
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 130/163 (79%), Gaps = 2/163 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+VLQ Y G +MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF + Y SVK AKVV D
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 161
TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++++GDL + ++ L+ F + + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 144 QMNGVYCSS--RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
NG + + R+ AT + D + TIFVG L +VT+
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 202 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 254
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 255 L--SWGRNPA 262
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 130/163 (79%), Gaps = 2/163 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+VLQ Y G +MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF + Y SVK AKVV D
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 161
TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++++GDL + ++ L+ F + + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 144 QMNGVYCSS--RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
NG + + R+ AT + D + TIFVG L +VT+
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 202 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 254
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 255 L--SWGRNPA 262
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 225 bits (573), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/163 (67%), Positives = 130/163 (79%), Gaps = 2/163 (1%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
MDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+VLQ Y G +MPN
Sbjct: 71 MDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGG 130
Query: 61 QPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF + Y SVK AKVV D
Sbjct: 131 QNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVID 190
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 161
TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 191 RLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++++GDL + ++ L+ F + + + KV+ + T +S+GYGF+ F + +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNT-GELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 144 QMNGVYCSS--RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
NG + + R+ AT + D + TIFVG L +VT+
Sbjct: 120 TYNGTIMPNGGQNYRLNWAT-----------FSAGERSSRQDDGPDHTIFVGDLAADVTD 168
Query: 202 EDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVR 254
L++ F ++Y + K+ + KG GFV+FA+ A+ ++ G + +R
Sbjct: 169 YLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Query: 255 L--SWGRNPA 262
+ + +NPA
Sbjct: 229 IGPATNKNPA 238
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
+ L F S G ++ K+IR +++ YGFV+++ A+A + G + Q
Sbjct: 73 DKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQA 126
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA ++ + D ++FVGDL+ +VTD+ L F SVY + A+V++D TG
Sbjct: 127 LKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTG 183
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX--- 179
RSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 184 RSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVL 243
Query: 180 ---------------XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIV--SVKIPVG 222
PE++ + TT++VG L +VT+ +L F G V V++ G
Sbjct: 244 TNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSG 303
Query: 223 KGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
KG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 304 KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ +VTD LL E F S P + K++ + YGFV + D + A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G + +++ A E S + +FVG L P VT+
Sbjct: 116 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 160
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 161 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 220
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
+ L F S G ++ K+IR +++ YGFV+++ A+A + G + Q
Sbjct: 73 DKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQA 126
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA ++ + D ++FVGDL+ +VTD+ L F SVY + A+V++D TG
Sbjct: 127 LKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTG 183
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX--- 179
RSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 184 RSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVL 243
Query: 180 ---------------XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIV--SVKIPVG 222
PE++ + TT++VG L +VT+ +L F G V V++ G
Sbjct: 244 TNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSG 303
Query: 223 KGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
KG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 304 KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 342
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ +VTD LL E F S P + K++ + YGFV + D + A+
Sbjct: 61 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G + +++ A E S + +FVG L P VT+
Sbjct: 116 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 160
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 161 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 220
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 133/279 (47%), Gaps = 29/279 (10%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
+ L F S G ++ K+IR +++ YGFV+++ A+A + G + Q
Sbjct: 57 DKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTLHGRQL--YGQA 110
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
++NWA ++ + D ++FVGDL+ +VTD+ L F SVY + A+V++D TG
Sbjct: 111 LKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTTCSDARVMWDHKTG 167
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXX--- 179
RSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 168 RSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVL 227
Query: 180 ---------------XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIV--SVKIPVG 222
PE++ + TT++VG L +VT+ +L F G V V++ G
Sbjct: 228 TNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSG 287
Query: 223 KGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
KG GFV++ A A+Q NG + +T++ SWG P
Sbjct: 288 KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSKP 326
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ +VTD LL E F S P + K++ + YGFV + D + A+
Sbjct: 45 SVYVGNIHVNVTDKLLAEVFQSAGP-LAGCKLIRKEKSS----YGFVDYHDRASAALAIM 99
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G + +++ A E S + +FVG L P VT+
Sbjct: 100 TLHGRQLYGQALKVNWAYANSSR---------------EDTSGHFNVFVGDLSPEVTDAT 144
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ KG GFV F + +A+ A+ + G +G + +R +W
Sbjct: 145 LFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNW 204
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 83/280 (29%), Positives = 130/280 (46%), Gaps = 28/280 (10%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ E L F+S G + K+IR +++ YGFV+++ ++A + G +
Sbjct: 57 VSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTLNGRNI--FG 110
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q ++NWA ++ G++ D IFVGDL+ +VTD+ L+ F S Y S A+V++D
Sbjct: 111 QSIKVNWA-YTRGQR-EDTSGHFHIFVGDLSPEVTDATLYACF-SAYSSCSDARVMWDQK 167
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP-----------------R 163
TGRS+G+GFV F + E A+ + G + SR +R AT
Sbjct: 168 TGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVE 227
Query: 164 KXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQY--GEIVSVKIPV 221
PE + TT++VG L P VT DL F G I V++
Sbjct: 228 LTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQR 287
Query: 222 GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNP 261
KG GFV+++ A A+Q N + + ++ SWG P
Sbjct: 288 DKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSKP 327
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 26/192 (13%)
Query: 78 DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 137
D+ + S++VG++ V++ LL E F+S +++ K++ + YGFV + D +
Sbjct: 41 DSSTCRSVYVGNIHPQVSEPLLQELFSSA-GALEGCKLIRKEKSS----YGFVDYFDRSS 95
Query: 138 RSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDP 197
+ A+ +NG + +++ A R E S + IFVG L P
Sbjct: 96 AAIAIVTLNGRNIFGQSIKVNWAYTRGQR---------------EDTSGHFHIFVGDLSP 140
Query: 198 NVTEEDLRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQ 251
VT+ L FS Y ++ +G GFV F N+ A+ A+ L G +G +
Sbjct: 141 EVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSR 200
Query: 252 TVRLSWGRNPAN 263
+R +W AN
Sbjct: 201 QIRCNWATKGAN 212
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 131/281 (46%), Gaps = 29/281 (10%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ E L FA TG + K+ R +++ YGF+ ++ +A + G +
Sbjct: 73 VTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLNGRHL--FG 126
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
QP ++NWA +++G++ D +IFVGDL+ +VTD+ L F SVY S A+V++D
Sbjct: 127 QPIKVNWA-YASGQR-EDTSGHYNIFVGDLSPEVTDATLFACF-SVYQSCSDARVMWDQK 183
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP-----------------R 163
TGRS+G+GFV F + A+ + G + SR +R AT
Sbjct: 184 TGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVE 243
Query: 164 KXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGE--IVSVKIPV 221
PE++ TT++VG L T+ DL + F G I V++
Sbjct: 244 LTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQR 303
Query: 222 GKGCGFVQFANRNNAEEALQKLNGTT-IGKQTVRLSWGRNP 261
KG GFV+++ A A+Q N + + + ++ SWG P
Sbjct: 304 DKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKP 344
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VG++ VT+ LL E FA P V+ K+ + YGF+ + D + A+
Sbjct: 63 SVYVGNVHTQVTEPLLQEVFAGTGP-VEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 117
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+NG + +P+++ A E S + IFVG L P VT+
Sbjct: 118 TLNGRHLFGQPIKVNWA---------------YASGQREDTSGHYNIFVGDLSPEVTDAT 162
Query: 204 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSW 257
L FS Y ++ +G GFV F ++ +A+ A+ L G +G + +R +W
Sbjct: 163 LFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNW 222
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 135/277 (48%), Gaps = 17/277 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F+S G I S KV + +G S+GYGFV+F + A+K ++ G+L+ N
Sbjct: 133 IDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLL-NDK 190
Query: 61 Q----PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVV 116
Q PF STG++ N ++FV +L+ TD L +TF + ++ +A V+
Sbjct: 191 QVYVGPFLRKQERESTGDRAKFN----NVFVKNLSESTTDDELKKTFGE-FGTITSAVVM 245
Query: 117 FDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXX 176
D + G+SK +GFV F ++ ++A+ +NG + +G A +
Sbjct: 246 RDGD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQ 304
Query: 177 XXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFA 231
++V LD ++ +E L++ FS YG I S K+ V +G GFV F+
Sbjct: 305 SMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFS 364
Query: 232 NRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A AL ++NG + + + ++ + +++ R+
Sbjct: 365 TPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARL 401
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 127/256 (49%), Gaps = 34/256 (13%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
++ L+ F G++ S++V R+ T S GYG+V + + A + L P ++P
Sbjct: 47 DSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLN--FTPLNNRP 104
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
R+ ++ + S +IF+ +L + LH+TF+S + ++ + KV D +G
Sbjct: 105 IRIMYSHRDPSIRKS---GQGNIFIKNLDKAIDHKALHDTFSS-FGNILSCKVAVDG-SG 159
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
+SKGYGFV+F + +A+ ++NG+ + + + +G ++ E
Sbjct: 160 QSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQ-----------------E 202
Query: 183 SDSTN-----TTIFVGGLDPNVTEEDLRQPFSQYGEIVS-VKIPVGKG---C-GFVQFAN 232
+ST +FV L + T+++L++ F ++G I S V + G G C GFV F +
Sbjct: 203 RESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFES 262
Query: 233 RNNAEEALQKLNGTTI 248
++A A++ LNG I
Sbjct: 263 TDDAARAVEALNGKKI 278
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 30/184 (16%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 138
N S++VGDL +VTDS L++ F + V + +V D T RS GYG+V + + +
Sbjct: 30 NFVTTSLYVGDLDMNVTDSQLYDLFNQLG-QVVSVRVCRDLTTRRSLGYGYVNYSNPQDA 88
Query: 139 SQAMTQMNGVYCSSRPMRIGAA----TPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGG 194
++A+ +N ++RP+RI + + RK S IF+
Sbjct: 89 ARALDVLNFTPLNNRPIRIMYSHRDPSIRK--------------------SGQGNIFIKN 128
Query: 195 LDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIG 249
LD + + L FS +G I+S K+ V KG GFVQF A++A++KLNG +
Sbjct: 129 LDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLN 188
Query: 250 KQTV 253
+ V
Sbjct: 189 DKQV 192
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEA 239
T+++VG LD NVT+ L F+Q G++VSV++ G G+V ++N +A A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 240 LQKLNGTTIGKQTVRLSWG-RNPANKQ 265
L LN T + + +R+ + R+P+ ++
Sbjct: 92 LDVLNFTPLNNRPIRIMYSHRDPSIRK 118
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 28/247 (11%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
L+ F+ + S++V R++ T S GYG+V + + A ++N V P +P R+
Sbjct: 41 LYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENLNYV--PLNGKPIRI 98
Query: 66 NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSK 125
FS + ++F+ +L + + LHETF SV+ +V + KV D+N G SK
Sbjct: 99 ---MFSHRDPLIRKTGFANLFIKNLETSIDNKALHETF-SVFGNVLSCKVAMDSN-GHSK 153
Query: 126 GYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDS 185
G+GFV+F +D A+ +++G+ + + + +G S
Sbjct: 154 GHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVG----------------YFVRCQERSSP 197
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEAL 240
T ++V L + T EDL+Q F+ +G I SV I K GFV F + ++A A+
Sbjct: 198 KFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAV 257
Query: 241 QKLNGTT 247
+KLNG+T
Sbjct: 258 EKLNGST 264
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 128/274 (46%), Gaps = 14/274 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F+ G + S KV + G S+G+GFV+F + +A+ ++ G+LM D
Sbjct: 124 IDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKLDGMLM--ND 180
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+ + + E++S ++ ++V +L+ T L + F S V + ++ +
Sbjct: 181 KKVYVGYFV-RCQERSSPKFTN--VYVKNLSESYTYEDLKQLFNSF--GVITSVLIMKYD 235
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXX 179
G SK +GFV F + + A+ ++NG + + + +G A +
Sbjct: 236 NGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKL 295
Query: 180 XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRN 234
+++ +D ++ EE L++ FS++G I S K+ KG GFV F
Sbjct: 296 KRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPE 355
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A +A+ ++NG IG++ V +S + ++ ++
Sbjct: 356 EASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQL 389
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 134/274 (48%), Gaps = 10/274 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F+S G+I S K+ + +G S+GYGFV+F + +A+ + G+L+ N
Sbjct: 131 IDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLI-NDK 188
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q F ++ + +++V +L+ T+ L F + Y ++ +A ++ DA+
Sbjct: 189 QVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGA-YGTITSAVLMRDAD 247
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
GRSK +GFV F + + ++A+ +NG + +G A +
Sbjct: 248 -GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKE 306
Query: 181 PESDS-TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRN 234
D +++ LD ++T+E L++ FS++G I S KI V +G GFV F+
Sbjct: 307 SVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPE 366
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A AL ++NG I + + ++ + +++ R+
Sbjct: 367 EASRALGEMNGKMIVSKPLYVAVAQRKEDRRARL 400
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 121/253 (47%), Gaps = 24/253 (9%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
++++ L+ F G++ S++V R+ T S GYG+V F + A + L P +
Sbjct: 43 VNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVLN--FTPMNN 100
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+ R+ +S + +S +IF+ +L + LH+TF+S + + + K+ D
Sbjct: 101 KSIRV---MYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSS-FGQIMSCKIATDG- 155
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
+G+SKGYGFV+F ++ A+ ++NG+ + + + +G ++
Sbjct: 156 SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVL---------- 205
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNN 235
S + ++V L + TE+DL+ F YG I S + K GFV F N +
Sbjct: 206 --SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
Query: 236 AEEALQKLNGTTI 248
A +A++ LNG +
Sbjct: 264 AAKAVEALNGKKV 276
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S++VGDL +V DS L++ F V V + +V D T RS GYG+V F + + ++A+
Sbjct: 33 SLYVGDLEVNVNDSQLYDLFNQVG-QVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT-IFVGGLDPNVTEE 202
+N +++ +R+ P S + T IF+ LD + +
Sbjct: 92 VLNFTPMNNKSIRV-----------------MYSHRDPSSRKSGTANIFIKNLDKTIDHK 134
Query: 203 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTTIGKQTV 253
L FS +G+I+S KI KG GFVQF ++A+ A+ KLNG I + V
Sbjct: 135 ALHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQV 190
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQ 241
T+++VG L+ NV + L F+Q G++VSV++ G G+V F N +A AL
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 242 KLNGTTIGKQTVRLSWG-RNPANKQ 265
LN T + +++R+ + R+P++++
Sbjct: 92 VLNFTPMNNKSIRVMYSHRDPSSRK 116
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 140/287 (48%), Gaps = 29/287 (10%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV--LQNYAGVLMPNTDQPF 63
L++ F+ + S +V ++ TG S YG+V SH A + L+N++ + +
Sbjct: 31 LYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELKNHSSL----NGKVI 86
Query: 64 RLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGR 123
R+ W + + S + +FV +LAA + + LH+ F Y ++ ++K+ + G+
Sbjct: 87 RVMWLSRDADARKSGKGN---VFVKNLAASIDNVGLHDLFQK-YGNILSSKIA-RSEDGK 141
Query: 124 SKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPES 183
SKG+G+++F + + A+ +MNG + + +G + P+
Sbjct: 142 SKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRK------------SERSLPDL 189
Query: 184 DSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEE 238
D+ T ++V LDP VTE+ L + FS +G+IVS+ I KG GFV + + ++A
Sbjct: 190 DAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARR 249
Query: 239 ALQKLNGTTIGKQTVRLSWGRNPANK-QIRMDFGSPWGGAYYGAPVY 284
A++ ++G+ G + + ++ + + QI G + G+ +Y
Sbjct: 250 AMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGSNIY 296
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 128/275 (46%), Gaps = 23/275 (8%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH F G I S K+ R+ + G S+G+G+++F S +A +Q G +T
Sbjct: 114 IDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNG----STV 168
Query: 61 QPFRLNWATFSTGEKTSDNVSDL-----SIFVGDLAADVTDSLLHETFASVYPSVKAAKV 115
+ ++ F K+ ++ DL +++V +L VT+ L E F+S + + + +
Sbjct: 169 RDKQIYVGKFI--RKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS-FGKIVSLAI 225
Query: 116 VFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXX 175
D N G+SKG+GFV + ++ +AM M+G S+ + + A +
Sbjct: 226 KKDEN-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFV 284
Query: 176 XXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQF 230
+ I+V +D +V +E+LR FS GE++S K+ KG GFV F
Sbjct: 285 EKGLK----HMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKGFGFVCF 340
Query: 231 ANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
+ A +++ NG + + + + + +++
Sbjct: 341 STVVEAFKSMSCFNGCMFHGKPLYVDFAQKKEDRK 375
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
+++VGDL +DVTD+ L++ F S + ++ +A+V D+ TG+S YG+V E +A+
Sbjct: 16 TLYVGDLHSDVTDAQLYKAF-SEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE 74
Query: 144 QMNGVYCSSRPMRI----GAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNV 199
N + + +R+ A RK S +FV L ++
Sbjct: 75 LKNHSSLNGKVIRVMWLSRDADARK--------------------SGKGNVFVKNLAASI 114
Query: 200 TEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 248
L F +YG I+S KI KG G++QF + +A A+QK+NG+T+
Sbjct: 115 DNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTV 168
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 137/272 (50%), Gaps = 28/272 (10%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ--NYAGVLMPN 58
+ ++ LH F+ ++S+++ R+ +G S YG+V F S A + ++ N++ +
Sbjct: 21 LSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVKNHSTL---- 76
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
+ R+ W+ + S ++FV +LA + +S L + F + ++ ++KVV
Sbjct: 77 NGKAIRVMWSRRDPDARKS---CIGNVFVKNLAESIDNSGLEDMFKK-FGNILSSKVVMS 132
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
+ G+SKGYGFV+F + + A+ ++NG + + +G +
Sbjct: 133 ED-GKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSG-------- 183
Query: 179 XXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANR 233
D+ T +++ LD +++E LR+ FS +G+I+S+ + + KG GFV F N
Sbjct: 184 ----PDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNP 239
Query: 234 NNAEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
+A+ A++ +NG +G + + ++ + A ++
Sbjct: 240 EDAKRAMETMNGLQLGSKILYVARAQKKAERE 271
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 122/256 (47%), Gaps = 21/256 (8%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D + L F G I S KV+ + + G S+GYGFV+F + +A ++ G L+ +
Sbjct: 109 IDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDK- 166
Query: 61 QPFRLNWATFSTGEKTSDNVSD------LSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
++ F K SD +S ++++ +L D++++LL E F+S + + +
Sbjct: 167 ---QIYVGKFV---KKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS-FGKIISLA 219
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXX 174
V D+N G SKG+GFV F + + +AM MNG+ S+ + + A +
Sbjct: 220 VAKDSN-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQF 278
Query: 175 XXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQ 229
+ I+V +D NV++E LR FS G I S KI + KG GFV
Sbjct: 279 EEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKGFGFVC 338
Query: 230 FANRNNAEEALQKLNG 245
F+ A +A+ +G
Sbjct: 339 FSTPEEANKAVNSFHG 354
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 39/271 (14%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS--HATAEKVLQNYAGVLMPN 58
++E L F+ ++ SI+V R++ S GY +V F + A K L N+ P
Sbjct: 41 VNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFT----PL 96
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
++P R+ FS + + ++F+ +L + LH+TFA+ P V + KV D
Sbjct: 97 NEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-VLSCKVALD 152
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
N G+SKGYGFV+F ++ A+ Q++G+ + + + +G +
Sbjct: 153 GN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ-------------- 197
Query: 179 XXPESDSTN-----TTIFVGGLDPNVTEEDLRQPFSQYGEIVS---VKIPVGKG-C-GFV 228
E TN T ++V + T+EDL+Q F +G I S +K GK C GFV
Sbjct: 198 ---ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFV 254
Query: 229 QFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
F + ++A A++KLNGT I V L GR
Sbjct: 255 NFQSPDSAAAAVEKLNGTAINDDKV-LFVGR 284
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 132/274 (48%), Gaps = 10/274 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH FA+ G + S KV + G S+GYGFV+F + A+ ++ G+L+ N
Sbjct: 129 IDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLI-NDK 186
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q + + +T+ + +++V +++ TD L + F + + +A V+ DAN
Sbjct: 187 QVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGP-FGMITSATVMKDAN 245
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXX 179
G+S+ +GFV F + + A+ ++NG + + + +G A +
Sbjct: 246 -GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERI 304
Query: 180 XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRN 234
+++ LD + EE L+ FS++G + S ++ + KG GFV F+
Sbjct: 305 SRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPE 364
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A +AL ++NG +G++ + ++ + ++ ++
Sbjct: 365 EANKALNEMNGKLVGRKPLFVAVAQRKEERKAQL 398
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 130/271 (47%), Gaps = 39/271 (14%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS--HATAEKVLQNYAGVLMPN 58
++E L F+ ++ SI+V R++ S GY +V F + A K L N+ P
Sbjct: 41 VNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELLNFT----PL 96
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
++P R+ FS + + ++F+ +L + LH+TFA+ P V + KV D
Sbjct: 97 NEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-VLSCKVALD 152
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXX 178
N G+SKGYGFV+F ++ A+ Q++G+ + + + +G +
Sbjct: 153 GN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQ-------------- 197
Query: 179 XXPESDSTN-----TTIFVGGLDPNVTEEDLRQPFSQYGEIVS---VKIPVGKG-C-GFV 228
E TN T ++V + T+EDL+Q F +G I S +K GK C GFV
Sbjct: 198 ---ERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFV 254
Query: 229 QFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
F + ++A A++KLNGT I V L GR
Sbjct: 255 NFQSPDSAAAAVEKLNGTAINDDKV-LFVGR 284
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 132/274 (48%), Gaps = 10/274 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH FA+ G + S KV + G S+GYGFV+F + A+ ++ G+L+ N
Sbjct: 129 IDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLI-NDK 186
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
Q + + +T+ + +++V +++ TD L + F + + +A V+ DAN
Sbjct: 187 QVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGP-FGMITSATVMKDAN 245
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXXXX 179
G+S+ +GFV F + + A+ ++NG + + + +G A +
Sbjct: 246 -GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERI 304
Query: 180 XPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRN 234
+++ LD + EE L+ FS++G + S ++ + KG GFV F+
Sbjct: 305 SRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPE 364
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A +AL ++NG +G++ + ++ + ++ ++
Sbjct: 365 EANKALNEMNGKLVGRKPLFVAVAQRKEERKAQL 398
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 134/276 (48%), Gaps = 15/276 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L+ F+ G I S K+ + +GLS+GYGFV+F + +A+ + G+L+ D
Sbjct: 123 IDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLL--ND 179
Query: 61 QPFRLNWATFSTGEKTSDNVSDL---SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
+P + F + + +S+ +++V +L+ VTD L TF Y ++ +A V+
Sbjct: 180 KPVYVGH--FQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGE-YGTITSAVVMR 236
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXX 177
D + G+SK +GFV F + + ++A+ +NG + +G A +
Sbjct: 237 DVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQS 295
Query: 178 XXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFAN 232
+++ LD +VT+E L + FS++G + S KI + +G GFV F+
Sbjct: 296 MKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFST 355
Query: 233 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A AL ++NG + + + ++ + ++ R+
Sbjct: 356 PEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARL 391
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 123/248 (49%), Gaps = 24/248 (9%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
++ L+ F G++ S+++ R+ + S GYG+V F + A K + P ++P
Sbjct: 37 DSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLN--FTPLNNKP 94
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTG 122
R+ ++ + S + IF+ +L + L++TF S++ ++ + K+ DA +G
Sbjct: 95 IRIMYSHRDPSVRKSGAAN---IFIKNLDRAIDHKALYDTF-SIFGNILSCKIAMDA-SG 149
Query: 123 RSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPE 182
SKGYGFV+F ++ A+ ++NG+ + +P+ +G ++
Sbjct: 150 LSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNAL------------ 197
Query: 183 SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAE 237
S++ ++V L +VT++DL+ F +YG I S + K GFV F N + A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAA 257
Query: 238 EALQKLNG 245
EA++ LNG
Sbjct: 258 EAVEALNG 265
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 30/185 (16%)
Query: 78 DNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNE 137
+ ++ S++VGDL DVTDS L++ F + V + ++ D + +S GYG+V F + ++
Sbjct: 19 NQLTTTSLYVGDLDHDVTDSQLYDLFNQIG-QVVSVRICRDLASQQSLGYGYVNFSNPHD 77
Query: 138 RSQAMTQMNGVYCSSRPMRIGAA----TPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
++AM +N +++P+RI + + RK S IF+
Sbjct: 78 AAKAMDVLNFTPLNNKPIRIMYSHRDPSVRK--------------------SGAANIFIK 117
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIP-----VGKGCGFVQFANRNNAEEALQKLNGTTI 248
LD + + L FS +G I+S KI + KG GFVQF N +A+ A+ KLNG +
Sbjct: 118 NLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLL 177
Query: 249 GKQTV 253
+ V
Sbjct: 178 NDKPV 182
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 7/87 (8%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEA 239
T T+++VG LD +VT+ L F+Q G++VSV+I G G+V F+N ++A +A
Sbjct: 22 TTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKA 81
Query: 240 LQKLNGTTIGKQTVRLSWG-RNPANKQ 265
+ LN T + + +R+ + R+P+ ++
Sbjct: 82 MDVLNFTPLNNKPIRIMYSHRDPSVRK 108
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 15/276 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D LH FA+ G + S KV + G S GYGFV++ +H +A+ ++ G+L+ +
Sbjct: 26 IDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKLDGMLIKDK- 83
Query: 61 QPFRLNWATFSTGEKTSDNVSD--LSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
+ F ++ S+N S +++V +L TD L + F S Y + +A ++ D
Sbjct: 84 ---KAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLF-STYGVITSAVIMKD 139
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS-RPMRIGAATPRKXXXXXXXXXXXXX 177
N G SK +GFV F + + A+ ++NG + + + +G A +
Sbjct: 140 EN-GNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQE 198
Query: 178 XXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV-----GKGCGFVQFAN 232
+++ LD ++ +E L++ FS++G I S K+ KG GFV F+
Sbjct: 199 KIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVAFST 258
Query: 233 RNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRM 268
A +A+ ++G IG++ + + + +++ R+
Sbjct: 259 SEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRL 294
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 22/170 (12%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV +L + + +LH+TFA+ + +V + KV D+N G+S GYGFV++ + A+
Sbjct: 16 NVFVKNLDTSIDNKVLHDTFAT-FGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIE 73
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTN-TTIFVGGLDPNVTEE 202
+++G+ + +G R+ E+ S T ++V L T+E
Sbjct: 74 KLDGMLIKDKKAFVGYFIRRQERS--------------ENGSPKFTNVYVKNLLETDTDE 119
Query: 203 DLRQPFSQYGEIVSVKIPV-----GKGCGFVQFANRNNAEEALQKLNGTT 247
DL++ FS YG I S I K GFV F + ++A A++KLNGTT
Sbjct: 120 DLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTT 169
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGV------ 54
+D L F G + +VI N+QT LS G+GFV + AE ++ + G
Sbjct: 120 VDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRS 179
Query: 55 LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
L+ N P +T + V L I+V +LA +V +S L + F S + + +A+
Sbjct: 180 LVVNKASPKGSRPERTERAPRTFEPV--LRIYVANLAWEVDNSRLEQVF-SEHGKIVSAR 236
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
VV+D TGRS+G+GFV D+ E + A+ ++G R +R+ A R
Sbjct: 237 VVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDR 285
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
D +FVG+ DV L F +V+ A+V+++ T S+G+GFV E A
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFGQA-GTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 142 MTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
+ + NG + R + + A+P+ P + I+V L V
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPK-------GSRPERTERAPRTFEPVLRIYVANLAWEVDN 219
Query: 202 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
L Q FS++G+IVS ++ +G GFV ++ +A+ L+G ++ +T+R+
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
Query: 256 S 256
S
Sbjct: 280 S 280
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 6/160 (3%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ E L F G + ++ V +++ T +GYGFVEF S A+ ++ + +
Sbjct: 36 ISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKL--YG 93
Query: 61 QPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 120
+P R+N A S +K+ D ++L F+G+L DV + LL++TF++ V K++ D +
Sbjct: 94 KPIRVNKA--SQDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 149
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 160
TG S+G+GF+ + A+ MNG Y +R + + A
Sbjct: 150 TGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 25/192 (13%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
G+ +++ D + +VG+L +++ LL E F P V V D T + +GYGFV F
Sbjct: 15 GQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQGYGFVEF 73
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFV 192
+ + A+ +N + +P+R+ A+ K +S +F+
Sbjct: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDK-----------------KSLDVGANLFI 116
Query: 193 GGLDPNVTEEDLRQPFSQYGEIVS----VKIP---VGKGCGFVQFANRNNAEEALQKLNG 245
G LDP+V E+ L FS +G IV+ ++ P +G GF+ + + ++ A++ +NG
Sbjct: 117 GNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNG 176
Query: 246 TTIGKQTVRLSW 257
+ + + +S+
Sbjct: 177 QYLCNRQITVSY 188
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM---- 56
+D L + F +G + +VI N+ T S G+GFV + E+ + ++G +
Sbjct: 133 VDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRL 192
Query: 57 -----------PNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFAS 105
P QP TF++G L +VG+L DV +S L + F S
Sbjct: 193 LTVNKAAPRGTPRLRQP-----RTFNSG---------LRAYVGNLPWDVDNSSLEQLF-S 237
Query: 106 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
+ V++A+VV+D TGRS+G+GFV ++ E + A+ ++G + R +R+ A R
Sbjct: 238 EHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEER 295
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
DL IFVG+L DV L + F +V+ A+V+++ +T RS+G+GFV E +A
Sbjct: 121 DLKIFVGNLPFDVDSEKLAQLFEQ-SGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 142 MTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
+ + +G R + + A PR P + ++ +VG L +V
Sbjct: 180 VNKFSGFELDGRLLTVNKAAPR----------GTPRLRQPRTFNSGLRAYVGNLPWDVDN 229
Query: 202 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
L Q FS++G++ S ++ +G GFV +N +A+ L+G + + +R+
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 256 SWGRNPANKQIRMDF 270
N A ++ R F
Sbjct: 290 ----NVAEERPRRSF 300
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGV------ 54
+D L F G + +VI N+QT LS G+GFV + AE ++ + G
Sbjct: 120 VDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRS 179
Query: 55 LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
L+ N P +T + V L I+V +LA +V +S L + F S + + +A+
Sbjct: 180 LVVNKASPKGSRPERTERAPRTFEPV--LRIYVANLAWEVDNSRLEQVF-SEHGKIVSAR 236
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 147
VV+D TGRS+G+GFV D+ E + A+ ++G
Sbjct: 237 VVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 14/170 (8%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
D +FVG+ DV L F +V+ A+V+++ T S+G+GFV E A
Sbjct: 108 DAKLFVGNFPFDVDSEKLAMLFGQA-GTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 142 MTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTE 201
+ + NG + R + + A+P+ P + I+V L V
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPK-------GSRPERTERAPRTFEPVLRIYVANLAWEVDN 219
Query: 202 EDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNG 245
L Q FS++G+IVS ++ +G GFV ++ +A+ L+G
Sbjct: 220 SRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
chr3:35625559-35621770 | 20130731
Length = 492
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEAL 240
PE +S T ++VGGLD VTE+DLR F +GEI SVK+ + + C FV + R AE+A
Sbjct: 222 PEDESIKT-LYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAA 280
Query: 241 QKL-NGTTIGKQTVRLSWGR 259
++L N I ++L WGR
Sbjct: 281 EELSNKLVIKGLRLKLMWGR 300
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ + L + F G + S++++ + T S G+ FV + AE+ ++ + G +
Sbjct: 119 LSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTV--GG 176
Query: 61 QPFRLNWATFSTGEKTSDNVSDL--------SIFVGDLAADVTDSLLHETFASVYPSVKA 112
+ ++N+ K S I+ G+L D+T L + FA P + +
Sbjct: 177 RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK-QPGLLS 235
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 161
AKVV++ N G+S+GYGFV F + A++ MNGV RP+R+ A
Sbjct: 236 AKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG+L ++ S L + F +V + ++++D T RS+G+ FV G+ + +A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEA-GNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 145 MNGVYCSSRPMRIG-AATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+G R +++ P P I+ G L ++T +
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHK------IYAGNLGWDMTSQY 222
Query: 204 LRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
LR+ F++ ++S K+ +G GFV F + E AL +NG + + +RL
Sbjct: 223 LRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 182 ESDSTNTT-IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 234
E++ST + +FVG L +++ L Q F + G +VSV+I +G FV N
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAP--VYDG 286
+AEEA++ +GTT+G + +++++ P + R+ GS + G Y +P +Y G
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVNFPEVPIVGK-RVQMGSTYRG-YVDSPHKIYAG 212
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 11/169 (6%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+ + L + F G + S++++ + T S G+ FV + AE+ ++ + G +
Sbjct: 119 LSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFDGTTV--GG 176
Query: 61 QPFRLNWATFSTGEKTSDNVSDL--------SIFVGDLAADVTDSLLHETFASVYPSVKA 112
+ ++N+ K S I+ G+L D+T L + FA P + +
Sbjct: 177 RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK-QPGLLS 235
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 161
AKVV++ N G+S+GYGFV F + A++ MNGV RP+R+ A
Sbjct: 236 AKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAV 284
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG+L ++ S L + F +V + ++++D T RS+G+ FV G+ + +A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEA-GNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRM 168
Query: 145 MNGVYCSSRPMRIG-AATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+G R +++ P P I+ G L ++T +
Sbjct: 169 FDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHK------IYAGNLGWDMTSQY 222
Query: 204 LRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRL 255
LR+ F++ ++S K+ +G GFV F + E AL +NG + + +RL
Sbjct: 223 LRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRL 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 11/114 (9%)
Query: 182 ESDSTNTT-IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 234
E++ST + +FVG L +++ L Q F + G +VSV+I +G FV N
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYYGAP--VYDG 286
+AEEA++ +GTT+G + +++++ P + R+ GS + G Y +P +Y G
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVNFPEVPIVGK-RVQMGSTYRG-YVDSPHKIYAG 212
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 9/167 (5%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
+D L G I+V+ ++ TG S G+ FV V+QN G
Sbjct: 124 VDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNLDG--KEFMG 181
Query: 61 QPFRLNWATFSTGEKTSDNV---SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
+ R+N FS K + + ++ +FVG+LA VT L + F + +V A+V+F
Sbjct: 182 RTLRVN---FSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQE-HGTVVGARVLF 237
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
D TG+S+GYGFV + +E A+ M+ V R +R+ A ++
Sbjct: 238 DGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKR 284
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 20/193 (10%)
Query: 73 GEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 132
GE ++ + ++ G+L V DS L Y S + +V++D +TG+S+G+ FV
Sbjct: 103 GETVAEVDTRTKLYFGNLPYSV-DSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTM 161
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFV 192
+ + + ++G R +R+ + K P T +FV
Sbjct: 162 SCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPK-------------PKEPLYPETEYKLFV 208
Query: 193 GGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT 246
G L VT E L Q F ++G +V ++ +G GFV +A ++ + AL ++
Sbjct: 209 GNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNV 268
Query: 247 TIGKQTVRLSWGR 259
+ +T+R+S +
Sbjct: 269 ELEGRTLRVSLAQ 281
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 55/298 (18%)
Query: 14 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 73
GE+ +++ + K + G+ FV + S A K ++ LN F G
Sbjct: 374 GEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK--------------ELNNTEFKAG 419
Query: 74 E-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-ANTGRSKGYGFVR 131
+ K S + + +F+G++ + L + + + P V A +++ D N ++GY F+
Sbjct: 420 KIKCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFID 479
Query: 132 FGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIF 191
+ ++ + +M +S ++G P E ++
Sbjct: 480 YHNNQCAEYSRQKM-----TSPSFKLGDNFPTVNWAEPKNADSSASSQVKE-------VY 527
Query: 192 VGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRNNAEEALQKLNG 245
V L NVT+E L++ F +G+I V +P K GFV FA R+NA +AL+
Sbjct: 528 VKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNTEK 587
Query: 246 TTIGKQTVRLSWGRNPA-------NKQIRMDF------------GSPWG--GAYYGAP 282
+ Q + S + A N Q + G+P+G GA YGAP
Sbjct: 588 YVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPHVGYGLDGNPYGVLGAGYGAP 645
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 82 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 141
D +F GDL +V D +L + F + +PS A+VV D TG++KGYGF+ F + + + A
Sbjct: 131 DYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 142 MTQMNGVYCSSRPMRI 157
+ +MNG Y +RP+++
Sbjct: 190 LKEMNGKYVGNRPIKL 205
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 116/270 (42%), Gaps = 30/270 (11%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQ 61
D++ C G+I IK+I++++TG S+GY FV + + A+K + + ++
Sbjct: 117 DDDVRELC-EPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI-------HNK 168
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-AN 120
F+ E + +F+G++ T+ + V P V++ ++ D N
Sbjct: 169 EFKGKTLRCLLSE------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
R++G+ FV + + A + SS ++ TP
Sbjct: 223 QSRNRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAA- 276
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNN 235
S ++V + NVT E L++ F ++GE+ V +P GK GF+ +A R++
Sbjct: 277 ----SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSS 332
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +A+++ I Q + + + A K+
Sbjct: 333 ALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 116/270 (42%), Gaps = 30/270 (11%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQ 61
D++ C G+I IK+I++++TG S+GY FV + + A+K + + ++
Sbjct: 117 DDDVRELC-EPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI-------HNK 168
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-AN 120
F+ E + +F+G++ T+ + V P V++ ++ D N
Sbjct: 169 EFKGKTLRCLLSE------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
R++G+ FV + + A + SS ++ TP
Sbjct: 223 QSRNRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAA- 276
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNN 235
S ++V + NVT E L++ F ++GE+ V +P GK GF+ +A R++
Sbjct: 277 ----SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSS 332
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +A+++ I Q + + + A K+
Sbjct: 333 ALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 116/270 (42%), Gaps = 30/270 (11%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQ 61
D++ C G+I IK+I++++TG S+GY FV + + A+K + + ++
Sbjct: 117 DDDVRELC-EPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI-------HNK 168
Query: 62 PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-AN 120
F+ E + +F+G++ T+ + V P V++ ++ D N
Sbjct: 169 EFKGKTLRCLLSE------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
R++G+ FV + + A + SS ++ TP
Sbjct: 223 QSRNRGFAFVLY-----YNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAA- 276
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC-----GFVQFANRNN 235
S ++V + NVT E L++ F ++GE+ V +P GK GF+ +A R++
Sbjct: 277 ----SQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSS 332
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +A+++ I Q + + + A K+
Sbjct: 333 ALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRS-KGYGFVRFGDDNERSQAM 142
+++V +L+ DVTDS L + F D+ T S + Y FV F ++ A
Sbjct: 28 NLYVANLSPDVTDSDLMDLFVQY--------GALDSVTSYSARNYAFVFFKRIDDAKAAK 79
Query: 143 TQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEE 202
+ G +RI A P K T ++VGG+ P VT+E
Sbjct: 80 NALQGFNFRGNSLRIEFARPAK---------------------TCKQLWVGGISPAVTKE 118
Query: 203 DLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR-NP 261
DL F ++G++ K + V+F N ++A +A++ +NG IG + +R+ + R N
Sbjct: 119 DLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNY 178
Query: 262 ANKQIRMDFGSPWGGAYYGAPVYDGYGYAL 291
A + +D+G G ++ + Y G+ L
Sbjct: 179 AKRDQGLDYGQFQGKSFGPSDSYSGHKRPL 208
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 31/210 (14%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRS-KGYGFVRFGDDNERSQAM 142
+++V +L+ DVTDS L + F D+ T S + Y FV F ++ A
Sbjct: 28 NLYVANLSPDVTDSDLMDLFVQY--------GALDSVTSYSARNYAFVFFKRIDDAKAAK 79
Query: 143 TQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEE 202
+ G +RI A P K T ++VGG+ P VT+E
Sbjct: 80 NALQGFNFRGNSLRIEFARPAK---------------------TCKQLWVGGISPAVTKE 118
Query: 203 DLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR-NP 261
DL F ++G++ K + V+F N ++A +A++ +NG IG + +R+ + R N
Sbjct: 119 DLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNY 178
Query: 262 ANKQIRMDFGSPWGGAYYGAPVYDGYGYAL 291
A + +D+G G ++ + Y G+ L
Sbjct: 179 AKRDQGLDYGQFQGKSFGPSDSYSGHKRPL 208
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 8 RCFA-STGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLN 66
R F S GE++ ++V++ K+ ++GY FV F + A K L+ LN
Sbjct: 118 RVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK--------------ELN 160
Query: 67 WATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA-NTGR 123
+ F G K + S + +F+G + + T + + A V P V + +++ D ++ R
Sbjct: 161 NSEFK-GRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSR 219
Query: 124 SKGYGFVRFGDDN--ERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXP 181
++G+ F+ + + E S+ + + + A PR
Sbjct: 220 NRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQV-------- 271
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNN 235
++V L N+T+ L++ F +G+I V +P K GFV FA+R++
Sbjct: 272 ------KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSS 325
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +AL+ I QT+ S + A+++
Sbjct: 326 AMKALKNTEKYEINGQTLECSLAKPQADQK 355
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 8 RCFA-STGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLN 66
R F S GE++ ++V++ K+ ++GY FV F + A K L+ LN
Sbjct: 118 RVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK--------------ELN 160
Query: 67 WATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA-NTGR 123
+ F G K + S + +F+G + + T + + A V P V + +++ D ++ R
Sbjct: 161 NSEFK-GRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSR 219
Query: 124 SKGYGFVRFGDDN--ERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXP 181
++G+ F+ + + E S+ + + + A PR
Sbjct: 220 NRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQV-------- 271
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNN 235
++V L N+T+ L++ F +G+I V +P K GFV FA+R++
Sbjct: 272 ------KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSS 325
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +AL+ I QT+ S + A+++
Sbjct: 326 AMKALKNTEKYEINGQTLECSLAKPQADQK 355
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 8 RCFA-STGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLN 66
R F S GE++ ++V++ K+ ++GY FV F + A K L+ LN
Sbjct: 118 RVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK--------------ELN 160
Query: 67 WATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA-NTGR 123
+ F G K + S + +F+G + + T + + A V P V + +++ D ++ R
Sbjct: 161 NSEFK-GRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSR 219
Query: 124 SKGYGFVRFGDDN--ERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXP 181
++G+ F+ + + E S+ + + + A PR
Sbjct: 220 NRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQV-------- 271
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNN 235
++V L N+T+ L++ F +G+I V +P K GFV FA+R++
Sbjct: 272 ------KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSS 325
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +AL+ I QT+ S + A+++
Sbjct: 326 AMKALKNTEKYEINGQTLECSLAKPQADQK 355
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 8 RCFA-STGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLN 66
R F S GE++ ++V++ K+ ++GY FV F + A K L+ LN
Sbjct: 118 RVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALK--------------ELN 160
Query: 67 WATFSTGEKTSDNVSDLS--IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDA-NTGR 123
+ F G K + S + +F+G + + T + + A V P V + +++ D ++ R
Sbjct: 161 NSEFK-GRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSR 219
Query: 124 SKGYGFVRFGDDN--ERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXP 181
++G+ F+ + + E S+ + + + A PR
Sbjct: 220 NRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWADPRNSESSSSSQV-------- 271
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNN 235
++V L N+T+ L++ F +G+I V +P K GFV FA+R++
Sbjct: 272 ------KAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSS 325
Query: 236 AEEALQKLNGTTIGKQTVRLSWGRNPANKQ 265
A +AL+ I QT+ S + A+++
Sbjct: 326 AMKALKNTEKYEINGQTLECSLAKPQADQK 355
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 63/302 (20%)
Query: 14 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 73
GE+ +++++ K ++G+ FV + + A K ++ LN F
Sbjct: 134 GEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE--------------ELNNTEFKGR 179
Query: 74 E-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-ANTGRSKGYGFVR 131
+ K S + + +F+G++ + L + + P V A ++V D N ++G+ F+
Sbjct: 180 KIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFID 239
Query: 132 FGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT-- 189
+ ++ +M S ++G +P SDS+ ++
Sbjct: 240 YHNNQCAEYGRQKM-----MSPSFKLGDNSP-----------TVSWADPKNSDSSASSQV 283
Query: 190 --IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNNAEEALQ 241
++V L NVT+E L++ F +G+I V +P K GFV FA R+NA +AL+
Sbjct: 284 KAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALK 343
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMD-------------------FGSPWG--GAYYG 280
+ Q + S + A+++ + G+P+G GA YG
Sbjct: 344 NTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYG 403
Query: 281 AP 282
AP
Sbjct: 404 AP 405
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 63/302 (20%)
Query: 14 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 73
GE+ +++++ K ++G+ FV + + A K ++ LN F
Sbjct: 134 GEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE--------------ELNNTEFKGR 179
Query: 74 E-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-ANTGRSKGYGFVR 131
+ K S + + +F+G++ + L + + P V A ++V D N ++G+ F+
Sbjct: 180 KIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFID 239
Query: 132 FGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT-- 189
+ ++ +M S ++G +P SDS+ ++
Sbjct: 240 YHNNQCAEYGRQKM-----MSPSFKLGDNSP-----------TVSWADPKNSDSSASSQV 283
Query: 190 --IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNNAEEALQ 241
++V L NVT+E L++ F +G+I V +P K GFV FA R+NA +AL+
Sbjct: 284 KAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALK 343
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMD-------------------FGSPWG--GAYYG 280
+ Q + S + A+++ + G+P+G GA YG
Sbjct: 344 NTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYG 403
Query: 281 AP 282
AP
Sbjct: 404 AP 405
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 63/302 (20%)
Query: 14 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 73
GE+ +++++ K ++G+ FV + + A K ++ LN F
Sbjct: 134 GEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE--------------ELNNTEFKGR 179
Query: 74 E-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-ANTGRSKGYGFVR 131
+ K S + + +F+G++ + L + + P V A ++V D N ++G+ F+
Sbjct: 180 KIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFID 239
Query: 132 FGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT-- 189
+ ++ +M S ++G +P SDS+ ++
Sbjct: 240 YHNNQCAEYGRQKM-----MSPSFKLGDNSP-----------TVSWADPKNSDSSASSQV 283
Query: 190 --IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNNAEEALQ 241
++V L NVT+E L++ F +G+I V +P K GFV FA R+NA +AL+
Sbjct: 284 KAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALK 343
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMD-------------------FGSPWG--GAYYG 280
+ Q + S + A+++ + G+P+G GA YG
Sbjct: 344 NTERYELDGQNLECSLAKPQADQKAVVSNTQTQGLLPSYPPPVGYGLVGNPYGALGAGYG 403
Query: 281 AP 282
AP
Sbjct: 404 AP 405
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTD 60
M + L FA G + S++++ ++ T S G+ FV S A++ ++ + G +
Sbjct: 120 MTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGG-- 177
Query: 61 QPFRLNW-------ATFSTGEKTSDNV-----SDLSIFVGDLAADVTDSLLHETFASVYP 108
+ ++N+ G+K ++ S I+ G+L + L + F P
Sbjct: 178 RSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDE-QP 236
Query: 109 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
+ AK++++ + GRS+G+GFV F A+ MNGV RP+R+ A R
Sbjct: 237 GLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAAR 291
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 10/189 (5%)
Query: 76 TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDD 135
TSD+ L +VG+L +T S L + FA +V + ++V+D T RS+G+ FV
Sbjct: 104 TSDDAGRL--YVGNLPFSMTSSQLADIFAEAG-TVVSVEIVYDRLTDRSRGFAFVTMKSA 160
Query: 136 NERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
E +A+ +G R ++ K DS + I+ G L
Sbjct: 161 EEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHK-IYAGNL 219
Query: 196 DPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTIG 249
+ +DLR F + ++ KI +G GFV F + E AL +NG +
Sbjct: 220 GWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQ 279
Query: 250 KQTVRLSWG 258
+ +RL+
Sbjct: 280 GRPLRLNLA 288
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 19/216 (8%)
Query: 69 TFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
TF G+ T + +FVG+L V + L E F + V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRI--GAATPRKXXXXXXXXXXXXXXXXPE---- 182
FV E A Q+NG R +R+ G P + P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 183 --SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 234
S + + VG L V L F + G+++ K+ +G GFV F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDF 270
+ A++ L+G + + +R+S PA+ + + F
Sbjct: 249 EVDSAIRTLDGADLNGRAIRVS----PADSRPKRQF 280
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS-------------HATAEKV 47
+D L F + G++ ++VI +K TG S G+GFV S + +
Sbjct: 95 VDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRE 154
Query: 48 LQNYAGVLMPNTDQPFRLNWATFSTGEK--------TSDNVSDLSIFVGDLAADVTDSLL 99
L+ AG P + R G++ +SD D + VG+LA V D+L
Sbjct: 155 LRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG--DNRVHVGNLAWGV-DNLA 211
Query: 100 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 159
E+ V AKV++D +GRS+G+GFV F +E A+ ++G + R +R+
Sbjct: 212 LESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSP 271
Query: 160 ATPR 163
A R
Sbjct: 272 ADSR 275
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 19/216 (8%)
Query: 69 TFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
TF G+ T + +FVG+L V + L E F + V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRI--GAATPRKXXXXXXXXXXXXXXXXPE---- 182
FV E A Q+NG R +R+ G P + P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPR 188
Query: 183 --SDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRN 234
S + + VG L V L F + G+++ K+ +G GFV F++ +
Sbjct: 189 GGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSAD 248
Query: 235 NAEEALQKLNGTTIGKQTVRLSWGRNPANKQIRMDF 270
+ A++ L+G + + +R+S PA+ + + F
Sbjct: 249 EVDSAIRTLDGADLNGRAIRVS----PADSRPKRQF 280
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 1 MDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS-------------HATAEKV 47
+D L F + G++ ++VI +K TG S G+GFV S + +
Sbjct: 95 VDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRE 154
Query: 48 LQNYAGVLMPNTDQPFRLNWATFSTGEK--------TSDNVSDLSIFVGDLAADVTDSLL 99
L+ AG P + R G++ +SD D + VG+LA V D+L
Sbjct: 155 LRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG--DNRVHVGNLAWGV-DNLA 211
Query: 100 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 159
E+ V AKV++D +GRS+G+GFV F +E A+ ++G + R +R+
Sbjct: 212 LESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSP 271
Query: 160 ATPR 163
A R
Sbjct: 272 ADSR 275
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F + T+ ++E F+ V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K P + + ++VG L N+TE
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYG-AVDRKLYVGNLHFNMTESQ 332
Query: 204 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G + V++P+ KG GF+QFA+ +A +A Q LNG I +T+++S
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQSLNGKLEIAGRTIKVS 391
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM--PNTD 60
E ++ F+ G++ +++I ++ + S+G G++EFY + + +L+ P
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMV 287
Query: 61 QP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAA 113
+P + N T + G D ++VG+L ++T+S L E F + +V+
Sbjct: 288 KPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEP-FGTVEVV 346
Query: 114 KVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 147
++ D TG KG+GF++F E ++A +NG
Sbjct: 347 QLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F + T+ ++E F+ V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K P + + ++VG L N+TE
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYG-AVDRKLYVGNLHFNMTESQ 332
Query: 204 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G + V++P+ KG GF+QFA+ +A +A Q LNG I +T+++S
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQSLNGKLEIAGRTIKVS 391
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM--PNTD 60
E ++ F+ G++ +++I ++ + S+G G++EFY + + +L+ P
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMV 287
Query: 61 QP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAA 113
+P + N T + G D ++VG+L ++T+S L E F + +V+
Sbjct: 288 KPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEP-FGTVEVV 346
Query: 114 KVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 147
++ D TG KG+GF++F E ++A +NG
Sbjct: 347 QLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F + T+ ++E F+ V+ +++ D N+ RSKG G++ F D A+
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K P + + ++VG L N+TE
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYG-AVDRKLYVGNLHFNMTESQ 332
Query: 204 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G + V++P+ KG GF+QFA+ +A +A Q LNG I +T+++S
Sbjct: 333 LREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHA-KAAQSLNGKLEIAGRTIKVS 391
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 11/154 (7%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM--PNTD 60
E ++ F+ G++ +++I ++ + S+G G++EFY + + +L+ P
Sbjct: 228 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMV 287
Query: 61 QP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAA 113
+P + N T + G D ++VG+L ++T+S L E F + +V+
Sbjct: 288 KPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEP-FGTVEVV 346
Query: 114 KVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 147
++ D TG KG+GF++F E ++A +NG
Sbjct: 347 QLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ R + A PR + IFVGGL VTE D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
+ F Q+G I V + +G GF+ + + E+ L K LNG +
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
+E+ L + F + G++ +++++ TG + G+GFV F + AE+V+ A
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ + S G + IFVG LA+ VT+S F + ++
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQ-FGTITD 134
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
V++D NT R +G+GF+ + D E + + + + + + A P+
Sbjct: 135 VVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKRAVPK 184
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ R + A PR + IFVGGL VTE D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
+ F Q+G I V + +G GF+ + + E+ L K LNG +
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
+E+ L + F + G++ +++++ TG + G+GFV F + AE+V+ A
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ + S G + IFVG LA+ VT+S F + ++
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQ-FGTITD 134
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
V++D NT R +G+GF+ + D E + + + + + + A P+
Sbjct: 135 VVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKRAVPK 184
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L + F + + V A ++ D TGR++G+GFV F D + + + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ R + A PR + IFVGGL VTE D
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
+ F Q+G I V + +G GF+ + + E+ L K LNG +
Sbjct: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
+E+ L + F + G++ +++++ TG + G+GFV F + AE+V+ A
Sbjct: 16 NEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEA 75
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ + S G + IFVG LA+ VT+S F + ++
Sbjct: 76 KKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQ-FGTITD 134
Query: 113 AKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 163
V++D NT R +G+GF+ + D E + + + + + + A P+
Sbjct: 135 VVVMYDHNTQRPRGFGFITY-DSEEAVEKVLHKTFHELNGKMVEVKRAVPK 184
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++F + T+ ++E F+ V+ +++ D N+ RSKG G++ F D A+
Sbjct: 203 TVFAYQMPLKATERDVYEFFSKA-GKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
++G +P+ + + K + + ++VG L N+TE +
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGP--YGAVDRKLYVGNLHFNMTEAN 318
Query: 204 LRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKLNGT-TIGKQTVRLS 256
LR+ F +G+I V++P+ KG GFVQFA+ +A +A Q LNG I +T+++S
Sbjct: 319 LREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA-KAAQSLNGKLEIAGRTIKVS 377
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 81/168 (48%), Gaps = 11/168 (6%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLM--PNTD 60
E ++ F+ G++ +++I ++ + S+G G++EFY + + +L+ P
Sbjct: 215 ERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMV 274
Query: 61 QPFRLNWATFSTGEKTSDNV------SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAK 114
+P + + V D ++VG+L ++T++ L E F + ++ +
Sbjct: 275 KPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLREIFEP-FGQIEVVQ 333
Query: 115 VVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG-VYCSSRPMRIGAAT 161
+ D TG KG+GFV+F E ++A +NG + + R +++ + T
Sbjct: 334 LPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVSSVT 380
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 41/243 (16%)
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
E S+N + +FVG + +T+ L F + V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLFKE-FAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
+E +A+ C ++ GA++P + E + +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGT-T 247
L N++E ++ FS+YG I ++I G KGC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 169
Query: 248 IGKQTVRL--SWGRNPANKQIRM---------------DFGSPWGGAYYG-APVYDGYGY 289
+ +V L W +Q R S +G G P Y+GYGY
Sbjct: 170 MEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGY 229
Query: 290 ALP 292
P
Sbjct: 230 QAP 232
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 6/157 (3%)
Query: 8 RCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNW 67
+ F GEI+ ++++++TG G+GF+ + + +KV+++ + ++ + R
Sbjct: 63 KHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED-SHIINSKQVEIKR--- 118
Query: 68 ATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGY 127
T G S + IFVG + ++VT+ + F + Y VK +++ D +T RS+G+
Sbjct: 119 -TIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRD-FFTRYGEVKDHQIMRDHSTNRSRGF 176
Query: 128 GFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
GFV F + ++ N + + + I A P+K
Sbjct: 177 GFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKK 213
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 27/174 (15%)
Query: 76 TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDD 135
T D S IF+G LA + T + + F Y + + ++ D TG+ +G+GF+ + D
Sbjct: 38 TGDGASPGKIFIGGLARETTIAQFIKHFGK-YGEITDSVIMKDRKTGQPRGFGFITYADP 96
Query: 136 NERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
+ + + + +S+ + I PR D IFVGG+
Sbjct: 97 SVVDKVIEDSH--IINSKQVEIKRTIPRGAVGS--------------KDFRTKKIFVGGI 140
Query: 196 DPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKL 243
NVTE++ R F++YGE+ +I +G GFV F + EEA+ L
Sbjct: 141 PSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTF----DTEEAVDDL 190
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L E F S Y VK A ++ D TGR++G+GFV F D + +
Sbjct: 8 LFIGGISWDTNEERLREYF-STYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ + R + A PR P T IFVGGL VTE D
Sbjct: 67 KHNI--DGRMVEAKKAVPRDDQNVLSRTSGSIHGS-PGPGRTRK-IFVGGLASTVTESDF 122
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
++ F Q+G I V + +G GF+ + + ++ L K LNG +
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMV 176
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ---NYAGVLMPN 58
+E L F++ GE+ +++++ TG + G+GFV F A A+ V+Q N G ++
Sbjct: 18 NEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEA 77
Query: 59 TDQPFRLNWATFSTGEKTSDNVSD-------LSIFVGDLAADVTDSLLHETFASVYPSVK 111
R + S +TS ++ IFVG LA+ VT+S + F + ++
Sbjct: 78 KKAVPRDDQNVLS---RTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQ-FGTIT 133
Query: 112 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
V++D NT R +G+GF+ + + Q + +
Sbjct: 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 98/243 (40%), Gaps = 41/243 (16%)
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
E S+N + +FVG + +T+ L F + V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLFKE-FAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
+E +A+ C ++ GA++P + E + +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNGT-T 247
L N++E ++ FS+YG I ++I G KGC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 169
Query: 248 IGKQTVRL--SWGRNPANKQIRM---------------DFGSPWGGAYYG-APVYDGYGY 289
+ +V L W +Q R S +G G P Y+GYGY
Sbjct: 170 MEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGY 229
Query: 290 ALP 292
P
Sbjct: 230 QAP 232
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 16/179 (8%)
Query: 78 DNVSDLSIFVGDLAADVTDSLLHETFASVYPS--VKAAKVVFDANTGR--SKGYGFVRFG 133
D + S+FV +L TD +L E F+ + + KV G+ S G+GFV F
Sbjct: 636 DRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFD 695
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
+ + G + + + E D ++T + V
Sbjct: 696 STETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKV--------EKDKSSTKLLVK 747
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPVG----KGCGFVQFANRNNAEEALQKLNGTTI 248
+ TE+DLRQ FS +G+I S+++P+ +G FV++ + A+ AL L+ T +
Sbjct: 748 NVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHL 806
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ D + L E F S Y VK A ++ D TGR++G+GFV F D + +
Sbjct: 8 LFIGGISWDTNEERLREYF-STYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDL 204
+ + R + A PR P T IFVGGL VTE D
Sbjct: 67 KHNI--DGRMVEAKKAVPRDDQNVLSRTSGSIHGS-PGPGRTRK-IFVGGLASTVTESDF 122
Query: 205 RQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
++ F Q+G I V + +G GF+ + + ++ L K LNG +
Sbjct: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMV 176
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ---NYAGVLMPN 58
+E L F++ GE+ +++++ TG + G+GFV F A A+ V+Q N G ++
Sbjct: 18 NEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEKHNIDGRMVEA 77
Query: 59 TDQPFRLNWATFSTGEKTSDNVSD-------LSIFVGDLAADVTDSLLHETFASVYPSVK 111
R + S +TS ++ IFVG LA+ VT+S + F + ++
Sbjct: 78 KKAVPRDDQNVLS---RTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQ-FGTIT 133
Query: 112 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
V++D NT R +G+GF+ + + Q + +
Sbjct: 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 6/157 (3%)
Query: 8 RCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNW 67
+ F GEI+ +++++ TG G+GF+ + + ++V+Q + D+ +
Sbjct: 36 KYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQENHII----NDKQVEIKR 91
Query: 68 ATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGY 127
T G +++ IFVG + A V++ L + F S + +V +++ D T RS+G+
Sbjct: 92 -TIPKGASQTNDFKTKKIFVGGIPATVSEDEL-KIFFSKHGNVVEHEIIRDHTTKRSRGF 149
Query: 128 GFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 164
GFV F D + N + + I A P+K
Sbjct: 150 GFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 76 TSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDD 135
+ D S IF+G LA D T + F Y + + ++ D +TGR +G+GF+ + D
Sbjct: 11 SGDGASPGKIFIGGLAKDTTLEEFVKYFER-YGEITDSVIMKDRHTGRPRGFGFITYADA 69
Query: 136 NERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGL 195
+ Q + Q N + + + + I P+ +D IFVGG+
Sbjct: 70 SVVDQVI-QENHI-INDKQVEIKRTIPKGASQT--------------NDFKTKKIFVGGI 113
Query: 196 DPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKLN 244
V+E++L+ FS++G +V +I +G GFV F + + L N
Sbjct: 114 PATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGN 168
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 106/239 (44%), Gaps = 40/239 (16%)
Query: 14 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 73
GE+ +++++ K ++G+ FV + + A K ++ + NT+ F+ ST
Sbjct: 134 GEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEE-----LNNTE--FKGRKIKCSTS 186
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD-ANTGRSKGYGFVRF 132
+ + +F+G++ + L + + P V A ++V D N ++G+ F+ +
Sbjct: 187 QAKN------RLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDY 240
Query: 133 GDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT--- 189
++ +M S ++G +P SDS+ ++
Sbjct: 241 HNNQCAEYGRQKM-----MSPSFKLGDNSP-----------TVSWADPKNSDSSASSQVK 284
Query: 190 -IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNNAEEALQ 241
++V L NVT+E L++ F +G+I V +P K GFV FA R+NA +AL+
Sbjct: 285 AVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALK 343
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 93 DVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS 152
DV L E + S Y ++ V+ + +TGRS+G+G+V F ++ + ++ +
Sbjct: 14 DVDTEGLKE-YMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGD 70
Query: 153 RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYG 212
R + + ATP++ T IFV + P+VTEE R F +YG
Sbjct: 71 RMLEVKVATPKEEMRAPAKKV--------------TRIFVARIPPSVTEETFRSHFEKYG 116
Query: 213 EIVSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 248
+I + +P + +G GF+ F N + E + +L G+ +
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 93 DVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS 152
DV L E + S Y ++ V+ + +TGRS+G+G+V F ++ + ++ +
Sbjct: 14 DVDTEGLKE-YMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGD 70
Query: 153 RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYG 212
R + + ATP++ T IFV + P+VTEE R F +YG
Sbjct: 71 RMLEVKVATPKEEMRAPAKKV--------------TRIFVARIPPSVTEETFRSHFEKYG 116
Query: 213 EIVSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 248
+I + +P + +G GF+ F N + E + +L G+ +
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 93 DVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS 152
DV L E + S Y ++ V+ + +TGRS+G+G+V F ++ + ++ +
Sbjct: 14 DVDTEGLKE-YMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGD 70
Query: 153 RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYG 212
R + + ATP++ T IFV + P+VTEE R F +YG
Sbjct: 71 RMLEVKVATPKEEMRAPAKKV--------------TRIFVARIPPSVTEETFRSHFEKYG 116
Query: 213 EIVSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 248
+I + +P + +G GF+ F N + E + +L G+ +
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 93 DVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS 152
DV L E + S Y ++ V+ + +TGRS+G+G+V F ++ + ++ +
Sbjct: 14 DVDTEGLKE-YMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEH--VLGD 70
Query: 153 RPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYG 212
R + + ATP++ T IFV + P+VTEE R F +YG
Sbjct: 71 RMLEVKVATPKEEMRAPAKKV--------------TRIFVARIPPSVTEETFRSHFEKYG 116
Query: 213 EIVSVKIP------VGKGCGFVQFANRNNAEEAL---QKLNGTTI 248
+I + +P + +G GF+ F N + E + +L G+ +
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAV 161
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ----NYAGVLMPN 58
E+ +H F G I+ I + TG G + F + A A++ L + G+ +
Sbjct: 233 EDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALDGADMGGLFL-- 290
Query: 59 TDQPFRLNWAT-FSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVF 117
QP + AT F+ K N I+VG L+ ++T+ L + F++ +VKA ++
Sbjct: 291 KIQPCKATQATRFTPEMKEGYN----RIYVGSLSWEITEEELRKFFSNC--NVKAIRLGM 344
Query: 118 DANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 162
D TG +GY V FGD A+ ++ RP+RI A P
Sbjct: 345 DKETGEFRGYAHVDFGDSQSLKTALA-LDQSVLFGRPVRISCAVP 388
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 42/244 (17%)
Query: 74 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 133
E S+N + +FVG + +T+ L F + V ++ D T S+G FV
Sbjct: 7 ESKSNNEESVKLFVGQVPKHMTEDELLTLFKE-FAIVDEVNIIKDKATRASRGCCFVICP 65
Query: 134 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVG 193
+E +A+ C ++ GA++P + E + +F+G
Sbjct: 66 SRDEADKAVNA-----CHNKKTLPGASSPLQVKYADG-----------ELERLEHKLFIG 109
Query: 194 GLDPNVTEEDLRQPFSQYGEIVSVKIPVGK------GCGFVQFANRNNAEEALQKLNGT- 246
L N++E ++ FS+YG I ++I G GC F+++ + A AL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKH 169
Query: 247 TIGKQTVRL--SWGRNPANKQIRM---------------DFGSPWGGAYYG-APVYDGYG 288
+ +V L W +Q R S +G G P Y+GYG
Sbjct: 170 KMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYG 229
Query: 289 YALP 292
Y P
Sbjct: 230 YQAP 233
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 81 SDLS-IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L E FA+ Y V A ++ D TGR++G+GFV F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFAT-YGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNV 199
+ + + R + A PR P T IFVGGL +
Sbjct: 62 RVIIDKH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGS-PGPGRT-KKIFVGGLPSTI 117
Query: 200 TEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 243
TE D + F Q+G I V + +G GF+ + ++EEA+ ++
Sbjct: 118 TESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDRV 163
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L FA+ GE+ ++R++ TG + G+GFV F A AE+V+ + A
Sbjct: 18 DEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ +N T S + + IFVG L + +T+S F + ++
Sbjct: 78 KKAVPRDDQQ-NINRQTGSV-QGSPGPGRTKKIFVGGLPSTITESDFKMYFDQ-FGTITD 134
Query: 113 AKVVFDANTGRSKGYGFVRF 132
V++D NT R +G+GF+ +
Sbjct: 135 VVVMYDHNTQRPRGFGFITY 154
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 81 SDLS-IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
SDL +F+G ++ D + L E FA+ Y V A ++ D TGR++G+GFV F D
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFAT-YGEVIEAVIMRDRATGRARGFGFVVFSDPAVAE 61
Query: 140 QAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNV 199
+ + + R + A PR P T IFVGGL +
Sbjct: 62 RVIIDKH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGS-PGPGRT-KKIFVGGLPSTI 117
Query: 200 TEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQKL 243
TE D + F Q+G I V + +G GF+ + ++EEA+ ++
Sbjct: 118 TESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDRV 163
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
DE L FA+ GE+ ++R++ TG + G+GFV F A AE+V+ + A
Sbjct: 18 DEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDKHIIDGRTVEA 77
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKA 112
+P DQ +N T S + + IFVG L + +T+S F + ++
Sbjct: 78 KKAVPRDDQQ-NINRQTGSV-QGSPGPGRTKKIFVGGLPSTITESDFKMYFDQ-FGTITD 134
Query: 113 AKVVFDANTGRSKGYGFVRF 132
V++D NT R +G+GF+ +
Sbjct: 135 VVVMYDHNTQRPRGFGFITY 154
>Medtr3g098620.5 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45037623 | 20130731
Length = 923
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S ++FVG++ ++ DS L F Y ++ + +G+ + + D
Sbjct: 268 SSRTLFVGNITSNAEDSELKALFEQ-YGDIRTLYTAC-----KHRGFVMISYYDLRAAQN 321
Query: 141 AMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVT 200
AM + SSR + I + P+ E D + T+ + GLD V
Sbjct: 322 AMKALQNRTLSSRKLDIRYSIPKGNPT--------------EKDIGHGTLMISGLDSAVL 367
Query: 201 EEDLRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
+++L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 368 KDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPG- 426
Query: 260 NPANKQIRM 268
+P N IRM
Sbjct: 427 HPRNA-IRM 434
>Medtr3g098620.3 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044605-45036753 | 20130731
Length = 923
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S ++FVG++ ++ DS L F Y ++ + +G+ + + D
Sbjct: 268 SSRTLFVGNITSNAEDSELKALFEQ-YGDIRTLYTAC-----KHRGFVMISYYDLRAAQN 321
Query: 141 AMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVT 200
AM + SSR + I + P+ E D + T+ + GLD V
Sbjct: 322 AMKALQNRTLSSRKLDIRYSIPKGNPT--------------EKDIGHGTLMISGLDSAVL 367
Query: 201 EEDLRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
+++L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 368 KDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPG- 426
Query: 260 NPANKQIRM 268
+P N IRM
Sbjct: 427 HPRNA-IRM 434
>Medtr3g098620.2 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044593-45036753 | 20130731
Length = 923
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S ++FVG++ ++ DS L F Y ++ + +G+ + + D
Sbjct: 268 SSRTLFVGNITSNAEDSELKALFEQ-YGDIRTLYTAC-----KHRGFVMISYYDLRAAQN 321
Query: 141 AMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVT 200
AM + SSR + I + P+ E D + T+ + GLD V
Sbjct: 322 AMKALQNRTLSSRKLDIRYSIPKGNPT--------------EKDIGHGTLMISGLDSAVL 367
Query: 201 EEDLRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
+++L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 368 KDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPG- 426
Query: 260 NPANKQIRM 268
+P N IRM
Sbjct: 427 HPRNA-IRM 434
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 80 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
+S +F+G ++ ++ L E F S Y V AK++ D +TGRS+G+GF+ F E S
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEAS 95
Query: 140 QAMTQMNGVYCSSRPMRIGAATPR 163
A+ M+ R +R+ AT R
Sbjct: 96 SALQAMDNKELDGRTVRVNYATER 119
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
++ +F+GG+ + E LR+ FS+YG+++ KI + +G GF+ FA A A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 240 LQKLNGTTIGKQTVRLSW 257
LQ ++ + +TVR+++
Sbjct: 98 LQAMDNKELDGRTVRVNY 115
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 80 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 139
+S +F+G ++ ++ L E F S Y V AK++ D +TGRS+G+GF+ F E S
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEAS 95
Query: 140 QAMTQMNGVYCSSRPMRIGAATPR 163
A+ M+ R +R+ AT R
Sbjct: 96 SALQAMDNKELDGRTVRVNYATER 119
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
++ +F+GG+ + E LR+ FS+YG+++ KI + +G GF+ FA A A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 240 LQKLNGTTIGKQTVRLSW 257
LQ ++ + +TVR+++
Sbjct: 98 LQAMDNKELDGRTVRVNY 115
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 91/204 (44%), Gaps = 15/204 (7%)
Query: 59 TDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFD 118
T + FR ++ S+ + T D+ + ++VG++ V++ L E + +V+ A+V++D
Sbjct: 37 TTRRFRKHFVV-SSEQATVDSPALRKLYVGNIPRTVSNDEL-EKIVQEHGAVEKAEVMYD 94
Query: 119 ANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG-AATPRKXXXXXXXXXXXXX 177
+ RS+ + FV + + A ++NG R +++ P
Sbjct: 95 KYSKRSRRFAFVTMKTVEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTF 154
Query: 178 XXXPESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPVGKGC------GFVQFA 231
P ++VG L NVT + L++ FS+ G +S K+ G GFV F+
Sbjct: 155 VDSPYK------VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFS 208
Query: 232 NRNNAEEALQKLNGTTIGKQTVRL 255
+ + E A+ N + Q +R+
Sbjct: 209 SDEDVEAAISSFNNALLEGQKIRV 232
>Medtr3g098620.4 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45043643-45036753 | 20130731
Length = 969
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S ++FVG++ ++ DS L F Y ++ + +G+ + + D
Sbjct: 268 SSRTLFVGNITSNAEDSELKALFEQ-YGDIRTLYTAC-----KHRGFVMISYYDLRAAQN 321
Query: 141 AMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVT 200
AM + SSR + I + P+ E D + T+ + GLD V
Sbjct: 322 AMKALQNRTLSSRKLDIRYSIPKGNPT--------------EKDIGHGTLMISGLDSAVL 367
Query: 201 EEDLRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
+++L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 368 KDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPG- 426
Query: 260 NPANKQIRM 268
+P N IRM
Sbjct: 427 HPRNA-IRM 434
>Medtr3g098620.1 | RNA recognition motif 1 in plant MEI2-like
protein | HC | chr3:45044608-45036736 | 20130731
Length = 969
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 23/189 (12%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S ++FVG++ ++ DS L F Y ++ + +G+ + + D
Sbjct: 268 SSRTLFVGNITSNAEDSELKALFEQ-YGDIRTLYTAC-----KHRGFVMISYYDLRAAQN 321
Query: 141 AMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVT 200
AM + SSR + I + P+ E D + T+ + GLD V
Sbjct: 322 AMKALQNRTLSSRKLDIRYSIPKGNPT--------------EKDIGHGTLMISGLDSAVL 367
Query: 201 EEDLRQPFSQYGEIVSV-KIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
+++L++ F YGEI + + P +++F + AE +L+ LNG + + ++L G
Sbjct: 368 KDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICLAGKHIKLEPG- 426
Query: 260 NPANKQIRM 268
+P N IRM
Sbjct: 427 HPRNA-IRM 434
>Medtr3g448370.5 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165361 | 20130731
Length = 876
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V DS L F Y ++ + +G+ + + D AM
Sbjct: 199 TLFVRNINSNVEDSELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 252
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ E D T+ V LDP+V+ +D
Sbjct: 253 ALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVSNDD 298
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 299 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 355
>Medtr3g448370.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 853
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V DS L F Y ++ + +G+ + + D AM
Sbjct: 196 TLFVRNINSNVEDSELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 249
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ E D T+ V LDP+V+ +D
Sbjct: 250 ALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVSNDD 295
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 296 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 352
>Medtr3g448370.3 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16170586-16165028 | 20130731
Length = 751
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V DS L F Y ++ + +G+ + + D AM
Sbjct: 94 TLFVRNINSNVEDSELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 147
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ E D T+ V LDP+V+ +D
Sbjct: 148 ALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVSNDD 193
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 194 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 250
>Medtr3g448370.4 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16172198-16165028 | 20130731
Length = 867
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V DS L F Y ++ + +G+ + + D AM
Sbjct: 210 TLFVRNINSNVEDSELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 263
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ E D T+ V LDP+V+ +D
Sbjct: 264 ALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVSNDD 309
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 310 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 366
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
L F+S G++ VI +K TG S+GYGFV Y H + + P+ R+
Sbjct: 92 LRTVFSSYGDLDEAIVIFDKATGRSKGYGFV-VYRHVDGAVL-----ALKEPSKKIDGRM 145
Query: 66 NWATFSTGEKTSDNVSDLSIFVGDLAADVT-DSLLHETFASVYPSVKAAKVVFDANTGRS 124
+ T +VS +FVG++ +V+ +SLL E S Y ++ + FD +G++
Sbjct: 146 TVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEF--SKYGEIEEGPLGFDKASGKT 203
Query: 125 KGYGFVRF----GDDNERSQAMTQMNG--VYC 150
+G+ F + G N +++M ++G V C
Sbjct: 204 RGFAFFVYKTEEGAKNSVAESMKTVDGHQVIC 235
>Medtr3g448370.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr3:16171071-16165028 | 20130731
Length = 856
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V DS L F Y ++ + +G+ + + D AM
Sbjct: 199 TLFVRNINSNVEDSELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 252
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ E D T+ V LDP+V+ +D
Sbjct: 253 ALQNKPLRRRKLDIHFSIPKDNPS--------------EKDINQGTLVVFNLDPSVSNDD 298
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F++F + A+ AL+ LN + I + ++L R
Sbjct: 299 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSR 355
>Medtr2g049640.2 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883965-21877390 | 20130731
Length = 865
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V D+ L F Y ++ + +G+ + + D AM
Sbjct: 197 TLFVRNINSNVEDTELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 250
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ + D T+ V LDP+V+ ED
Sbjct: 251 ALQNKPLRRRKLDIHFSIPKDNPS--------------DKDINQGTLVVFNLDPSVSNED 296
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F+++ + AE AL+ LN + I + ++L R
Sbjct: 297 LRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSR 353
>Medtr2g049640.1 | RNA recognition motif 2 in plant MEI2-like
protein | HC | chr2:21883858-21877390 | 20130731
Length = 865
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
++FV ++ ++V D+ L F Y ++ + +G+ + + D AM
Sbjct: 197 TLFVRNINSNVEDTELRTLFEQ-YGDIRTLYTAC-----KHRGFVMISYYDIRAARTAMR 250
Query: 144 QMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLDPNVTEED 203
+ R + I + P+ + D T+ V LDP+V+ ED
Sbjct: 251 ALQNKPLRRRKLDIHFSIPKDNPS--------------DKDINQGTLVVFNLDPSVSNED 296
Query: 204 LRQPFSQYGEIVSVK-IPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGR 259
LRQ F YGE+ ++ P + F+++ + AE AL+ LN + I + ++L R
Sbjct: 297 LRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSR 353
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG ++ + T+ L F Y V + + FD T +G+GFV F D + A+
Sbjct: 12 LFVGGISRETTEDTLKHHFTK-YGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 145 MNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTN-----TTIFVGGLDPNV 199
+ + R + + A PR + N IFVGGL N+
Sbjct: 71 THAIL--GRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANM 128
Query: 200 TEEDLRQPFSQYGEIVSVKIPVG------KGCGFVQFANRNNAEEALQK----LNGTTI 248
+ E+ ++ F ++G I V + +G GF+ F + ++ + + + LNG +
Sbjct: 129 SVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQV 187
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 243
+FVGGL + TE+ L FS YG++V K+ KG GFV FA+++ AE+A+ ++
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 244 NGTTIGKQTVRLSWGRNPANKQIRM 268
N + + V + + + + + M
Sbjct: 94 NEKALNGRVVFVDYAKPDTKRSMGM 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 83 LSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 142
+FVG L+ T+ L + F++ Y V AKV+ D + +SKGYGFV F +E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSN-YGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 143 TQMNGVYCSSRPMRIGAATP 162
T+MN + R + + A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 138
++S ++VG ++ D+ L E+FA Y V A+V+ D GRSKG+GFV F E
Sbjct: 36 SMSSAKLYVGGISYSTDDAGLRESFAR-YGDVLDARVIIDREQGRSKGFGFVTFATSEEA 94
Query: 139 SQAMTQMNGVYCSSRPMRIGAATPR 163
S A+ M+ R +R+ A R
Sbjct: 95 SAALQAMDNQELHGRTVRVNYAQER 119
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
++ ++VGG+ + + LR+ F++YG+++ ++ + KG GFV FA A A
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 240 LQKLNGTTIGKQTVRLSWGR 259
LQ ++ + +TVR+++ +
Sbjct: 98 LQAMDNQELHGRTVRVNYAQ 117
>Medtr8g070490.1 | RNA recognition motif (RRM) containing protein |
HC | chr8:29979285-29991364 | 20130731
Length = 1031
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 182 ESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI---------PVGKGCGFVQFAN 232
+ D T ++VG L P V E L + F ++G I SVKI + CGFV F N
Sbjct: 180 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 239
Query: 233 RNNAEEALQKLNGTTIGKQTVRLSWGRNPA 262
R + + A ++ G + + +++ WG++ A
Sbjct: 240 RADGQAAKDEMQGVVVYEYELKIGWGKSVA 269
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+FVG L+ V + L + F+S + V ++V+D ++GR++G+GFV F +++ A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 145 MNGVYCSSRPMRIGAATPR 163
M+G RP+RI A +
Sbjct: 97 MDGKALLGRPLRINFALEK 115
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 79 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 138
++S +F+G L+ +V D L + F + Y V A+V+ D TGRS+G+GFV F +
Sbjct: 32 HMSSSKLFIGGLSYNVDDQSLRDAF-TTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 139 SQAMTQMNGVYCSSRPMRIGAATPRK 164
+ A++ M+G + R +R+ A R+
Sbjct: 91 TSALS-MDGQDLNGRNIRVSYANDRQ 115
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 186 TNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEA 239
+++ +F+GGL NV ++ LR F+ YG++V ++ +G GFV F + +A A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 240 LQKLNGTTIGKQTVRLSWG 258
L ++G + + +R+S+
Sbjct: 94 L-SMDGQDLNGRNIRVSYA 111
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
+E L F++ G++ + V+R K TG G+GFV F + ++VL++ A
Sbjct: 18 NEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDA 77
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSD----NVSDLSIFVGDLAADVTDSLLHETFASVYP 108
DQ ++ + ++ + N+ IFVG L + + + F Y
Sbjct: 78 KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYF-EAYG 136
Query: 109 SVKAAKVVFDANTGRSKGYGFVRF 132
V V++D NTGR +G+GF+ F
Sbjct: 137 HVTDVVVMYDQNTGRPRGFGFITF 160
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 14/144 (9%)
Query: 2 DENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY---------A 52
+E L F++ G++ + V+R K TG G+GFV F + ++VL++ A
Sbjct: 18 NEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDA 77
Query: 53 GVLMPNTDQPFRLNWATFSTGEKTSD----NVSDLSIFVGDLAADVTDSLLHETFASVYP 108
DQ ++ + ++ + N+ IFVG L + + + F Y
Sbjct: 78 KRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYF-EAYG 136
Query: 109 SVKAAKVVFDANTGRSKGYGFVRF 132
V V++D NTGR +G+GF+ F
Sbjct: 137 HVTDVVVMYDQNTGRPRGFGFITF 160
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 81 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 140
S +F+ L+ + +++L +TF + + KV+ + TG SKGYGFVRF + +
Sbjct: 31 SSTKLFIAGLSYNTNETVLRDTFEQ-HGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 141 AMTQMNGVYCSSRPMRIGAA 160
A +++G R +R+G A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKL 243
IFVGGLD + TEEDL++ F + GE++ V++ +G V+FAN+ +A++AL ++
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 244 NGTTI 248
I
Sbjct: 480 KNPVI 484
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKL 243
IFVGGLD + TEEDL++ F + GE++ V++ +G V+FAN+ +A++AL ++
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 244 NGTTI 248
I
Sbjct: 480 KNPVI 484
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
S+ V +L+ D + LHE F + + SV V D NTG S+G+GFV F + + +A+
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 144 QMNGVYCSSRPMRIGAATPR 163
++NG + +++ ATPR
Sbjct: 259 KLNGYGYDNLILKVEWATPR 278
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 35/269 (13%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E+ L + F+ G ++ ++++ N QT ++G+ F+ F + A++ + ++ N Q
Sbjct: 228 EDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVI-NGKQ- 285
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV-YPSVKAAKVVFDAN- 120
T + SD ++++G++ T L E +V+ +V D+N
Sbjct: 286 ------CGVTPSQDSD-----TLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSND 334
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G ++G+ F+ F + RS AM + R + G P K
Sbjct: 335 KGTNRGFAFLEF---SSRSDAMDAFKRL--QKRDVTFGVDKPAKVSFADSFIDPGD---- 385
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI----PVG--KGCGFVQFANRN 234
E S T+F+ L P+ E+ +R +YGE+ +++ P K GFV F + +
Sbjct: 386 -EIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHD 444
Query: 235 NAEEALQKLNGTTIG----KQTVRLSWGR 259
A + GT +G K VR R
Sbjct: 445 AAIRCADSITGTELGEGDKKAKVRARLSR 473
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 243
+FVGGLD + TE+DLR+ FS+ G + V++ + KG F++F N A+ A+ +L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 244 NGTTI-GKQ 251
I GKQ
Sbjct: 277 KNPVINGKQ 285
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 35/269 (13%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E+ L + F+ G ++ ++++ N QT ++G+ F+ F + A++ + ++ N Q
Sbjct: 228 EDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVI-NGKQ- 285
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV-YPSVKAAKVVFDAN- 120
T + SD ++++G++ T L E +V+ +V D+N
Sbjct: 286 ------CGVTPSQDSD-----TLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSND 334
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G ++G+ F+ F + RS AM + R + G P K
Sbjct: 335 KGTNRGFAFLEF---SSRSDAMDAFKRL--QKRDVTFGVDKPAKVSFADSFIDPGD---- 385
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI----PVG--KGCGFVQFANRN 234
E S T+F+ L P+ E+ +R +YGE+ +++ P K GFV F + +
Sbjct: 386 -EIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHD 444
Query: 235 NAEEALQKLNGTTIG----KQTVRLSWGR 259
A + GT +G K VR R
Sbjct: 445 AAIRCADSITGTELGEGDKKAKVRARLSR 473
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 243
+FVGGLD + TE+DLR+ FS+ G + V++ + KG F++F N A+ A+ +L
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 244 NGTTI-GKQ 251
I GKQ
Sbjct: 277 KNPVINGKQ 285
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKI------PVGKGCGFVQFANRNNAEEALQKL 243
IFVGGLD + TEEDL++ F + GE++ V++ +G V+FAN+ +A++AL ++
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 244 NGTTI 248
I
Sbjct: 480 KNPVI 484
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 35/269 (13%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E+ L + F+ G ++ ++++ N QT ++G+ F+ F + A++ + ++ N Q
Sbjct: 227 EDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVI-NGKQ- 284
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV-YPSVKAAKVVFDAN- 120
T + SD ++++G++ T L E +V+ +V D+N
Sbjct: 285 ------CGVTPSQDSD-----TLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSND 333
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G ++G+ F+ F + RS AM + R + G P K
Sbjct: 334 KGTNRGFAFLEF---SSRSDAMDAFKRL--QKRDVTFGVDKPAKVSFADSFIDPGD---- 384
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI----PVG--KGCGFVQFANRN 234
E S T+F+ L P+ E+ +R +YGE+ +++ P K GFV F + +
Sbjct: 385 -EIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHD 443
Query: 235 NAEEALQKLNGTTIG----KQTVRLSWGR 259
A + GT +G K VR R
Sbjct: 444 AAIRCADSITGTELGEGDKKAKVRARLSR 472
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 243
+FVGGLD + TE+DLR+ FS+ G + V++ + KG F++F N A+ A+ +L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 244 NGTTI-GKQ 251
I GKQ
Sbjct: 276 KNPVINGKQ 284
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 35/269 (13%)
Query: 3 ENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQP 62
E+ L + F+ G ++ ++++ N QT ++G+ F+ F + A++ + ++ N Q
Sbjct: 227 EDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVI-NGKQ- 284
Query: 63 FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV-YPSVKAAKVVFDAN- 120
T + SD ++++G++ T L E +V+ +V D+N
Sbjct: 285 ------CGVTPSQDSD-----TLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSND 333
Query: 121 TGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXX 180
G ++G+ F+ F + RS AM + R + G P K
Sbjct: 334 KGTNRGFAFLEF---SSRSDAMDAFKRL--QKRDVTFGVDKPAKVSFADSFIDPGD---- 384
Query: 181 PESDSTNTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI----PVG--KGCGFVQFANRN 234
E S T+F+ L P+ E+ +R +YGE+ +++ P K GFV F + +
Sbjct: 385 -EIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHD 443
Query: 235 NAEEALQKLNGTTIG----KQTVRLSWGR 259
A + GT +G K VR R
Sbjct: 444 AAIRCADSITGTELGEGDKKAKVRARLSR 472
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 7/69 (10%)
Query: 190 IFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKL 243
+FVGGLD + TE+DLR+ FS+ G + V++ + KG F++F N A+ A+ +L
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 244 NGTTI-GKQ 251
I GKQ
Sbjct: 276 KNPVINGKQ 284
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 10/87 (11%)
Query: 188 TTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQ 241
T +F+GG+ + E LR+ FS+YGE++ +I + +G GF+ F + A A+Q
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRM 268
L+G + + VR+++ AN++ R+
Sbjct: 102 ALDGQDLHGRRVRVNY----ANERPRV 124
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 85 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 144
+F+G ++ ++ L E F S Y V A+++ D TGRS+G+GF+ F E S A+
Sbjct: 44 LFIGGVSYSTDENSLREAF-SRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 145 MNGVYCSSRPMRIGAATPR 163
++G R +R+ A R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 77 SDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDN 136
SD + +FVG + T+ + F + +V ++ D TG+ +G F+++
Sbjct: 82 SDGGNFAKLFVGSVPRTATEEDIRPLFEE-HGNVVEVALIKDRKTGQHQGCCFIKYATSE 140
Query: 137 ERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTIFVGGLD 196
E QA+ ++ + + P +G R + +FVG L+
Sbjct: 141 EADQAIRALHNRH--TLPGGVGPIQVRYADGERERL-----------GAVEYKLFVGSLN 187
Query: 197 PNVTEEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFANRNNAEEALQKLNG--TTIG 249
+ +++ + FS+YG I V + +GCGFV++++R+ A A+ LNG T G
Sbjct: 188 KQASVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRG 247
Query: 250 KQ---TVRLSWGRNPANKQIRMDFGSPWGGAYYGAPVYDGYGYALP 292
+ VR + + P R G +G A +G P D G LP
Sbjct: 248 CEQPLIVRFADPKRPRQGDSR---GPAFGSAGFG-PRLDSPGTRLP 289
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 6 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 65
L F++ GE+ VI +K TG S+GYGFV F H + + +L
Sbjct: 89 LRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFL-HVDGALLALREPSKRIDGRVTVTQL 147
Query: 66 NWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSK 125
A S + +V+ I+V ++ D+ L F S+Y ++ + FD TGRSK
Sbjct: 148 AAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHF-SIYGEIEEGPLGFDKQTGRSK 206
Query: 126 GYGF 129
G+
Sbjct: 207 GFAL 210
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 84 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 143
+++VG LA +V +S+LH F + +K K D T + + +GFV F + + S AM
Sbjct: 11 TLYVGGLAEEVNESILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 144 QMNGVYCSSRPMRIGAATPRK 164
M+G R + + A P K
Sbjct: 70 NMDGAELYGRVLTVNYALPEK 90
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFANRNNAEEALQ 241
+++I+VGGL T+E +R F+ YG I+ VKI +GK FV F N +A +A+
Sbjct: 6 DSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAIN 65
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYY 279
+NG TI + V+++ ++ R +FG Y+
Sbjct: 66 DMNGRTINGRVVKVNGVKSRGGGSGRSNFGRERERYYH 103
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 187 NTTIFVGGLDPNVTEEDLRQPFSQYGEIVSVKI-----PVGKGCGFVQFANRNNAEEALQ 241
+++I+VGGL T+E +R F+ YG I+ VKI +GK FV F N +A +A+
Sbjct: 6 DSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSAIDAIN 65
Query: 242 KLNGTTIGKQTVRLSWGRNPANKQIRMDFGSPWGGAYY 279
+NG TI + V+++ ++ R +FG Y+
Sbjct: 66 DMNGRTINGRVVKVNGVKSRGGGSGRSNFGRERERYYH 103
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 77 SDNVSDLS--------IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
S+NV L+ IFV L D T L TF S Y ++ K V D +G+SKGY
Sbjct: 151 SENVRQLADVDPAHRKIFVHGLGWDATAETLTTTF-SKYGEIEDCKAVTDKASGKSKGYA 209
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT 188
F+ F +A+ Q V IG T P S+ T
Sbjct: 210 FILFKHRTGCRRALKQPQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQR 261
Query: 189 TIFVGGLDPNVTEEDLRQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQK 242
IFV + ++ + L + F Q+GE+ + + GK GF F + +A++AL++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 243 LN 244
N
Sbjct: 322 PN 323
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 77 SDNVSDLS--------IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
S+NV L+ IFV L D T L TF S Y ++ K V D +G+SKGY
Sbjct: 151 SENVRQLADVDPAHRKIFVHGLGWDATAETLTTTF-SKYGEIEDCKAVTDKASGKSKGYA 209
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT 188
F+ F +A+ Q V IG T P S+ T
Sbjct: 210 FILFKHRTGCRRALKQPQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQR 261
Query: 189 TIFVGGLDPNVTEEDLRQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQK 242
IFV + ++ + L + F Q+GE+ + + GK GF F + +A++AL++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 243 LN 244
N
Sbjct: 322 PN 323
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 77 SDNVSDLS--------IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 128
S+NV L+ IFV L D T L TF S Y ++ K V D +G+SKGY
Sbjct: 151 SENVRQLADVDPAHRKIFVHGLGWDATAETLTTTF-SKYGEIEDCKAVTDKASGKSKGYA 209
Query: 129 FVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNT 188
F+ F +A+ Q V IG T P S+ T
Sbjct: 210 FILFKHRTGCRRALKQPQKV--------IGNRTTSCQLASAGPVPAPPPNAPPVSEYTQR 261
Query: 189 TIFVGGLDPNVTEEDLRQPFSQYGEI----VSVKIPVGKGCGFVQFANR--NNAEEALQK 242
IFV + ++ + L + F Q+GE+ + + GK GF F + +A++AL++
Sbjct: 262 KIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEE 321
Query: 243 LN 244
N
Sbjct: 322 PN 323
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 191 FVGGLDPNVTEEDLRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLN 244
FVGGL E L + FSQYGEIV KI +G GFV FAN + +A++ +N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 245 GTTIGKQTVRLS 256
G + + + ++
Sbjct: 69 GQDLDGRNITVN 80