Miyakogusa Predicted Gene
- Lj5g3v0035410.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v0035410.1 Non Characterized Hit- tr|I3S4D1|I3S4D1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,27.66,0.0000000000001,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain;
,CUFF.52448.1
(305 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 385 e-107
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 374 e-104
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 349 2e-96
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 338 3e-93
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 288 6e-78
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 255 3e-68
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 251 5e-67
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 251 5e-67
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 250 1e-66
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 250 1e-66
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 245 5e-65
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 102 5e-22
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 101 8e-22
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 1e-21
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 1e-21
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 1e-21
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 86 3e-17
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 4e-17
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 85 7e-17
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 84 3e-16
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 83 3e-16
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 82 4e-16
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 82 4e-16
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 80 2e-15
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 79 7e-15
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 78 1e-14
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 75 8e-14
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 71 1e-12
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 71 1e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 69 4e-12
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 4e-12
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 9e-11
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 62 5e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 9e-09
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 9e-09
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 57 2e-08
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 57 2e-08
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 57 2e-08
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 7e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 53 3e-07
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 4e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 5e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 6e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 51 2e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 51 2e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 50 3e-06
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 7e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 7e-06
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/304 (64%), Positives = 219/304 (72%), Gaps = 12/304 (3%)
Query: 1 MQQSNGSDSS----TEPNNKQRS---AAVAVPQQWVPMQYP--AMVMXXXXXXXXXXXXX 51
MQQ+NGSDSS T N +QR A VAVPQQW+PMQYP AMVM
Sbjct: 1 MQQTNGSDSSSPSETTTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPP 60
Query: 52 XXXXXXXXXXXXXXXXX---XXXXXXXXGSNNNIENKTVWVGDLHHWMDENYLHRCFAST 108
+N ENKT+W+GDLH WMDE+YLHRCFAST
Sbjct: 61 PYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFAST 120
Query: 109 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 168
GEI+S+KVIRNK +G+SEGYGF EF+SHATAEKVLQNYAG+LMPN DQ FRLNWATFSTG
Sbjct: 121 GEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTG 180
Query: 169 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 228
+K SDNV+DLSIFVGDLAADVTDS+LHETF+S YPSVKAAKVV+DANTGRSKGYGFVRFG
Sbjct: 181 DKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFG 240
Query: 229 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTVSFS 288
D++ERSQAMTQMNGVYCSSRPMRIGAATPRK E+DSTNTTVSFS
Sbjct: 241 DESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTVSFS 300
Query: 289 AYFI 292
A +
Sbjct: 301 ALIL 304
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/297 (64%), Positives = 214/297 (72%), Gaps = 12/297 (4%)
Query: 1 MQQSNGSDSS----TEPNNKQRS---AAVAVPQQWVPMQYP--AMVMXXXXXXXXXXXXX 51
MQQ+NGSDSS T N +QR A VAVPQQW+PMQYP AMVM
Sbjct: 1 MQQTNGSDSSSPSETTTNKQQRQQPPAPVAVPQQWIPMQYPTAAMVMPHHMMPPQHYAPP 60
Query: 52 XXXXXXXXX---XXXXXXXXXXXXXXXXGSNNNIENKTVWVGDLHHWMDENYLHRCFAST 108
+N ENKT+W+GDLH WMDE+YLHRCFAST
Sbjct: 61 PYVPYHHHHHQFQQPLHVPPHQHQNHQNQHGSNGENKTLWIGDLHSWMDESYLHRCFAST 120
Query: 109 GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTG 168
GEI+S+KVIRNK +G+SEGYGF EF+SHATAEKVLQNYAG+LMPN DQ FRLNWATFSTG
Sbjct: 121 GEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNYAGILMPNADQAFRLNWATFSTG 180
Query: 169 EKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFG 228
+K SDNV+DLSIFVGDLAADVTDS+LHETF+S YPSVKAAKVV+DANTGRSKGYGFVRFG
Sbjct: 181 DKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFG 240
Query: 229 DDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTTV 285
D++ERSQAMTQMNGVYCSSRPMRIGAATPRK E+DSTNTT+
Sbjct: 241 DESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTI 297
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 23/188 (12%)
Query: 79 NNNIENKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
++N+ + +++VGDL + ++ LH F+S+ + + KV+ + TG S+GYGFV F +
Sbjct: 184 SDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDES 243
Query: 138 TAEKVLQNYAGVLMPNTDQPFRLNWATF-------------STGEKTSDNVSDLSIFVGD 184
+ + GV + +P R+ AT T ++ + ++ +IFVG
Sbjct: 244 ERSQAMTQMNGVYC--SSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGG 301
Query: 185 LAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVY 244
L ++VTD L +TF S Y + + K+ KG GFV+F + N +A+ ++NG
Sbjct: 302 LDSNVTDEDLKQTF-SQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTM 354
Query: 245 CSSRPMRI 252
+ +R+
Sbjct: 355 IGKQTVRL 362
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 185/307 (60%), Positives = 205/307 (66%), Gaps = 23/307 (7%)
Query: 1 MQQSNGSDSS-------------TEPNNKQRSAAVAVPQQWVPMQYP--AMVMXXXXXXX 45
MQ +NGSDS T P S PQQWVPMQYP AMVM
Sbjct: 1 MQSTNGSDSKPTEQSSNNRPQQKTPPPPSPHSLTFPPPQQWVPMQYPPAAMVMPHHMLPP 60
Query: 46 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNNNIENKTVWVGDLHHWMDENYLHRCF 105
++ +NKT+WVGDLHHWMDENYLHRCF
Sbjct: 61 QHYPPPPHHYMAYHHYLHHVPHVHH-------GSSAADNKTLWVGDLHHWMDENYLHRCF 113
Query: 106 ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATF 165
ASTGEI SIKVIRNKQT +EGYGFVEF SH TAEKVLQ YAG+LMPNT+QPFRLNWATF
Sbjct: 114 ASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATF 173
Query: 166 STGE-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGF 224
STG+ K SDNV DLSIFVGDLAADVTD++L ETF+ YPSVKAAKVVFDANTGRSKGYGF
Sbjct: 174 STGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGF 233
Query: 225 VRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT 284
VRFGDD ERS+A+ +MNGV+CSSR MRIGAATPRK ++DSTNTT
Sbjct: 234 VRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTT 293
Query: 285 VSFSAYF 291
VSFSA++
Sbjct: 294 VSFSAFY 300
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 338 bits (867), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 180/301 (59%), Positives = 199/301 (66%), Gaps = 23/301 (7%)
Query: 1 MQQSNGSDSS-------------TEPNNKQRSAAVAVPQQWVPMQYP--AMVMXXXXXXX 45
MQ +NGSDS T P S PQQWVPMQYP AMVM
Sbjct: 1 MQSTNGSDSKPTEQSSNNRPQQKTPPPPSPHSLTFPPPQQWVPMQYPPAAMVMPHHMLPP 60
Query: 46 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSNNNIENKTVWVGDLHHWMDENYLHRCF 105
++ +NKT+WVGDLHHWMDENYLHRCF
Sbjct: 61 QHYPPPPHHYMAYHHYLHHVPHVHH-------GSSAADNKTLWVGDLHHWMDENYLHRCF 113
Query: 106 ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATF 165
ASTGEI SIKVIRNKQT +EGYGFVEF SH TAEKVLQ YAG+LMPNT+QPFRLNWATF
Sbjct: 114 ASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATF 173
Query: 166 STGE-KTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGF 224
STG+ K SDNV DLSIFVGDLAADVTD++L ETF+ YPSVKAAKVVFDANTGRSKGYGF
Sbjct: 174 STGDHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGF 233
Query: 225 VRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKXXXXXXXXXXXXXXXXPESDSTNTT 284
VRFGDD ERS+A+ +MNGV+CSSR MRIGAATPRK ++DSTNTT
Sbjct: 234 VRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTT 293
Query: 285 V 285
+
Sbjct: 294 I 294
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 79 NNNIENKTVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
++N+ + +++VGDL + + L F+ + + KV+ + TG S+GYGFV F
Sbjct: 181 SDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDG 240
Query: 138 TAEKVLQNYAGVL-----------MPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLA 186
K L GV P ++ + T ++ + ++ +IFVG L
Sbjct: 241 ERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLD 300
Query: 187 ADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCS 246
T L + F S Y + + K+ KG GFV+F + N +A+ ++NG
Sbjct: 301 PSATAEDLRQPF-SQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGTTVG 353
Query: 247 SRPMRI 252
+ +R+
Sbjct: 354 KQTVRL 359
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 288 bits (736), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 131/182 (71%), Positives = 156/182 (85%), Gaps = 5/182 (2%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDLHHWMDE +LH CFA TGE++S KVIRNKQTG SEGYGFVEFY+ A AEKV
Sbjct: 114 EIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKV 173
Query: 143 LQNYAGVLMPNTDQPFRLNWATFST----GE-KTSDNVSDLSIFVGDLAADVTDSLLHET 197
LQN+ G +MPNTDQ FRLNWATFS GE ++S+ SDLS+FVGDLA DVTD++L ET
Sbjct: 174 LQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQET 233
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
FAS + S+K AKVV D+NTGRSKGYGFVRFGD++ER++AMT+MNGVYCSSRPMR+G ATP
Sbjct: 234 FASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATP 293
Query: 258 RK 259
+K
Sbjct: 294 KK 295
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 116/177 (65%), Positives = 141/177 (79%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +W+DENYL CF+ TGE+ SIK+IRNK TG EGYGF+EF SH+ AE+V
Sbjct: 13 EVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERV 72
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
LQ Y G MP T+Q FRLNWA+F GE+ D D SIFVGDLA DVTD LL ETF + Y
Sbjct: 73 LQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHY 132
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
SV+ AKVV D NTGRSKGYGFV+F D++ER++AM++MNGVYCS+RPMRI AATP+K
Sbjct: 133 GSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 189
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 2/176 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+V
Sbjct: 58 EVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERV 117
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFAS 200
LQ Y G +MPN Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF +
Sbjct: 118 LQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRA 177
Query: 201 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 178 RYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 2/176 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+V
Sbjct: 58 EVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERV 117
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFAS 200
LQ Y G +MPN Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF +
Sbjct: 118 LQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRA 177
Query: 201 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 178 RYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 2/176 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+V
Sbjct: 58 EVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERV 117
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFAS 200
LQ Y G +MPN Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF +
Sbjct: 118 LQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRA 177
Query: 201 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 178 RYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 117/176 (66%), Positives = 141/176 (80%), Gaps = 2/176 (1%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E +T+W+GDL +WMDENYL+ CF +TGE++S+KVIRNKQT SEGYGF+EF + ATAE+V
Sbjct: 58 EVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERV 117
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTS--DNVSDLSIFVGDLAADVTDSLLHETFAS 200
LQ Y G +MPN Q +RLNWATFS GE++S D+ D +IFVGDLAADVTD LL ETF +
Sbjct: 118 LQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRA 177
Query: 201 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
Y SVK AKVV D TGRSKGYGFVRF D+ E+ +AMT+M GV CS+RPMRIG AT
Sbjct: 178 RYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 84 NKTVWVGDLHHWMDENYLHRCF-ASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ T++VGDL + + L F A + KV+ ++ TG S+GYGFV F +
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 143 LQNYAGVLMPNTDQPFRLNWATFS--------------TGEKTSDNVSDLSIFVGDLAAD 188
+ GVL + +P R+ AT +G ++ ++ ++ +IFVG+L +
Sbjct: 214 MTEMQGVLC--STRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPN 271
Query: 189 VTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
VTD L + F Y + K+ K GFV+F D + +A+ +NG +
Sbjct: 272 VTDDHLRQVFTQ-YGELVHVKIP------SGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQ 324
Query: 249 PMRI 252
+R+
Sbjct: 325 NVRL 328
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 245 bits (625), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 137/174 (78%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E KT+W+GDL +WMDENYL+ CF+ TGE+ S+KVIRNKQT SEGYGF+EF S A AE+V
Sbjct: 72 EVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERV 131
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
LQ + G +MPN Q FRLNWATFS+GEK D+ D +IFVGDLAADV+D L E F + Y
Sbjct: 132 LQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRY 191
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
SVK AKVV D TGR+KGYGFVRF D++E+ +AMT+M GV CS+RPMRIG A+
Sbjct: 192 NSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPAS 245
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 25/183 (13%)
Query: 86 TVWVGDLHHWMDENYLHRCFAST-GEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
T++VGDL + +++L F + + KV+ ++ TG ++GYGFV F + + +
Sbjct: 168 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 227
Query: 145 NYAGVLMPNTDQPFRLNWATFST---------------GEKTSDNVSDLSIFVGDLAADV 189
GVL + +P R+ A+ G + ++ ++ +IFVG+L +V
Sbjct: 228 EMQGVLC--STRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNV 285
Query: 190 TDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRP 249
TD L + F Y + K+ K GFV+F D + +A+ +NG +
Sbjct: 286 TDEHLKQVFTQ-YGELVHVKIP------SGKRCGFVQFADRSSAEEALRVLNGTLLGGQN 338
Query: 250 MRI 252
+R+
Sbjct: 339 VRL 341
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + E L FA TG + K+ R +++ YGF+ ++ +A +
Sbjct: 62 RSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAIL 117
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + QP ++NWA +++G++ D +IFVGDL+ +VTD+ L F SVY S
Sbjct: 118 TLNGRHL--FGQPIKVNWA-YASGQR-EDTSGHYNIFVGDLSPEVTDATLFACF-SVYQS 172
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + A+ + G + SR +R AT
Sbjct: 173 CSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 224
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 97/172 (56%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + E L F+S G + K+IR +++ YGFV+++ ++A +
Sbjct: 46 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIV 101
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + Q ++NWA ++ G++ D IFVGDL+ +VTD+ L+ F S Y S
Sbjct: 102 TLNGRNI--FGQSIKVNWA-YTRGQR-EDTSGHFHIFVGDLSPEVTDATLYACF-SAYSS 156
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRS+G+GFV F + E A+ + G + SR +R AT
Sbjct: 157 CSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWAT 208
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 37/195 (18%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VGDL + + L+ CF++ S +V+ +++TG S G+GFV F + A+ + +
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 147 AGVLMPNTDQPFRLNWAT-------------------FSTG------EKTSDNVSD---- 177
G + + R NWAT ++G E TSD+ +
Sbjct: 193 TGKWL--GSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQ 250
Query: 178 -LSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
+++VG+LA +VT LH F ++ + D R KG+GFVR+ E + A
Sbjct: 251 YTTVYVGNLAPEVTSVDLHHHFHAL-----GVGTIEDVRVQRDKGFGFVRYSTHGEAALA 305
Query: 237 MTQMNGVYCSSRPMR 251
+ N + +P++
Sbjct: 306 IQMGNTRFLFGKPIK 320
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + + L F S G ++ K+IR +++ YGFV+++ A+A +
Sbjct: 44 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 99
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + Q ++NWA ++ + D ++FVGDL+ +VTD+ L F SVY +
Sbjct: 100 TLHGRQL--YGQALKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTT 154
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 155 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 206
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 43/196 (21%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+VGDL + + L CF+ S +V+ + +TG S+GYGFV F H A+ + +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 147 AGVLMPNTDQPFRLNWATFSTG-----EKTSD--------------------------NV 175
G + N + R NWAT G EK +D N
Sbjct: 191 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 248
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
S +++VG+L DVT + LH F ++ A V+ + KG+GFVR+ E +
Sbjct: 249 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 303
Query: 236 AMTQMNGVYCSSRPMR 251
A+ NG RP+R
Sbjct: 304 AIQMANG-----RPVR 314
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + + L F S G ++ K+IR +++ YGFV+++ A+A +
Sbjct: 60 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + Q ++NWA ++ + D ++FVGDL+ +VTD+ L F SVY +
Sbjct: 116 TLHGRQL--YGQALKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTT 170
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 43/196 (21%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+VGDL + + L CF+ S +V+ + +TG S+GYGFV F H A+ + +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 147 AGVLMPNTDQPFRLNWATFSTG-----EKTSD--------------------------NV 175
G + N + R NWAT G EK +D N
Sbjct: 207 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 264
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
S +++VG+L DVT + LH F ++ A V+ + KG+GFVR+ E +
Sbjct: 265 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 319
Query: 236 AMTQMNGVYCSSRPMR 251
A+ NG RP+R
Sbjct: 320 AIQMANG-----RPVR 330
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 9/172 (5%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ 144
++V+VG++H + + L F S G ++ K+IR +++ YGFV+++ A+A +
Sbjct: 60 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIM 115
Query: 145 NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPS 204
G + Q ++NWA ++ + D ++FVGDL+ +VTD+ L F SVY +
Sbjct: 116 TLHGRQL--YGQALKVNWAYANSSRE--DTSGHFNVFVGDLSPEVTDATLFACF-SVYTT 170
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
A+V++D TGRSKGYGFV F D + A+ M G + +R +R AT
Sbjct: 171 CSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWAT 222
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 43/196 (21%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+VGDL + + L CF+ S +V+ + +TG S+GYGFV F H A+ + +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 147 AGVLMPNTDQPFRLNWATFSTG-----EKTSD--------------------------NV 175
G + N + R NWAT G EK +D N
Sbjct: 207 TGKWLGN--RQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNP 264
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
S +++VG+L DVT + LH F ++ A V+ + KG+GFVR+ E +
Sbjct: 265 SYTTVYVGNLPHDVTQAELHCQFHAL-----GAGVLEEVRVQSGKGFGFVRYNTHEEAAM 319
Query: 236 AMTQMNGVYCSSRPMR 251
A+ NG RP+R
Sbjct: 320 AIQMANG-----RPVR 330
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 9/182 (4%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E+ ++VG+ +D L F G + +VI N+QT LS G+GFV + AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 143 LQNYAGV------LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHE 196
++ + G L+ N P +T + V L I+V +LA +V +S L +
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPV--LRIYVANLAWEVDNSRLEQ 224
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAAT 256
F S + + +A+VV+D TGRS+G+GFV D+ E + A+ ++G R +R+ A
Sbjct: 225 VF-SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAE 283
Query: 257 PR 258
R
Sbjct: 284 DR 285
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
++ T +VG+L + E L F G + ++ V +++ T +GYGFVEF S A+
Sbjct: 23 QDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYA 82
Query: 143 LQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
++ + + +P R+N A S +K+ D ++L F+G+L DV + LL++TF++
Sbjct: 83 IKVLNMIKL--YGKPIRVNKA--SQDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFG 136
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
V K++ D +TG S+G+GF+ + A+ MNG Y +R
Sbjct: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNR 182
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 95/176 (53%), Gaps = 7/176 (3%)
Query: 78 SNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
S EN +++VGDL +++ L+ F+ + S++V R++ T S GYG+V + +
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77
Query: 138 TAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A ++N V P +P R+ FS + ++F+ +L + + LHET
Sbjct: 78 DAANAMENLNYV--PLNGKPIRI---MFSHRDPLIRKTGFANLFIKNLETSIDNKALHET 132
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
F SV+ +V + KV D+N G SKG+GFV+F +D A+ +++G+ + + + +G
Sbjct: 133 F-SVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVG 186
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 15/185 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L L + F S G I+S+ +++ G S+ +GFV F S +A ++
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMK-YDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 146 -----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLL 194
+ G +++ L K + ++++ ++ + + L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
E F S + ++ + KV+ DA GRSKG GFV F E S+A+ +MNG +P+ +
Sbjct: 321 KELF-SEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSV 378
Query: 255 ATPRK 259
A ++
Sbjct: 379 AQRKE 383
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 30/191 (15%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E+ ++VG+L +D L + F +G + +VI N+ T S G+GFV + E+
Sbjct: 120 EDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
Query: 143 LQNYAGVLM---------------PNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAA 187
+ ++G + P QP TF++G L +VG+L
Sbjct: 180 VNKFSGFELDGRLLTVNKAAPRGTPRLRQP-----RTFNSG---------LRAYVGNLPW 225
Query: 188 DVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSS 247
DV +S L + F S + V++A+VV+D TGRS+G+GFV ++ E + A+ ++G +
Sbjct: 226 DVDNSSLEQLF-SEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNG 284
Query: 248 RPMRIGAATPR 258
R +R+ A R
Sbjct: 285 RAIRVNVAEER 295
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 97/176 (55%), Gaps = 11/176 (6%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATA 139
N + +++VGDL H + ++ L+ F G++ S+++ R+ + S GYG+V F + A
Sbjct: 19 NQLTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA 78
Query: 140 EKVLQ--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
K + N+ P ++P R+ ++ + S +IF+ +L + L++T
Sbjct: 79 AKAMDVLNFT----PLNNKPIRIMYSHRDPSVRKSGAA---NIFIKNLDRAIDHKALYDT 131
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
F S++ ++ + K+ DA +G SKGYGFV+F ++ A+ ++NG+ + +P+ +G
Sbjct: 132 F-SIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATA 139
+N + V+V +L + ++ L F G I+S V+R+ G S+ +GFV F + A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAA 256
Query: 140 EKVLQN-----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAAD 188
+ ++ Y G + ++ L + ++T D ++++ +L
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDS 316
Query: 189 VTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSR 248
VTD L E F S + +V + K++ D G S+G GFV F E ++A+ +MNG + +
Sbjct: 317 VTDEKLSELF-SEFGTVTSCKILRDPQ-GISRGSGFVAFSTPEEATRALAEMNGKMVAGK 374
Query: 249 PMRIGAATPRK 259
P+ + A ++
Sbjct: 375 PLYVAPAQKKE 385
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS--HATAEK 141
N +++VGDL ++E L F+ ++ SI+V R++ S GY +V F + A K
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 142 VLQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
L N+ P ++P R+ FS + + ++F+ +L + LH+TFA+
Sbjct: 89 ELLNFT----PLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAF 141
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
P V + KV D N G+SKGYGFV+F ++ A+ Q++G+ + + + +G
Sbjct: 142 GP-VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V ++ + L + F G I+S V+++ G S +GFV F S +A ++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTS-------------DNVSDLSIFVGDLAADVTDSL 193
G + N D+ + A + + + ++++ +L D +
Sbjct: 270 NGTAI-NDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEK 328
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
L + F S + +V + +V+ D++ G SKG GFV F E ++A+ +MNG +P+ +
Sbjct: 329 LKDLF-SEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVA 386
Query: 254 AA 255
A
Sbjct: 387 VA 388
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 91/172 (52%), Gaps = 11/172 (6%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS--HATAEK 141
N +++VGDL ++E L F+ ++ SI+V R++ S GY +V F + A K
Sbjct: 29 NASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAK 88
Query: 142 VLQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
L N+ P ++P R+ FS + + ++F+ +L + LH+TFA+
Sbjct: 89 ELLNFT----PLNEKPIRI---MFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAF 141
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
P V + KV D N G+SKGYGFV+F ++ A+ Q++G+ + + + +G
Sbjct: 142 GP-VLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVG 191
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V ++ + L + F G I+S V+++ G S +GFV F S +A ++
Sbjct: 211 VYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKL 269
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTS-------------DNVSDLSIFVGDLAADVTDSL 193
G + N D+ + A + + + ++++ +L D +
Sbjct: 270 NGTAI-NDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEK 328
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
L + F S + +V + +V+ D++ G SKG GFV F E ++A+ +MNG +P+ +
Sbjct: 329 LKDLF-SEFGTVTSCRVMLDSH-GHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVA 386
Query: 254 AA 255
A
Sbjct: 387 VA 388
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 9/166 (5%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
E+ ++VG+ +D L F G + +VI N+QT LS G+GFV + AE
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 143 LQNYAGV------LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHE 196
++ + G L+ N P +T + V L I+V +LA +V +S L +
Sbjct: 167 VEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPV--LRIYVANLAWEVDNSRLEQ 224
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
F S + + +A+VV+D TGRS+G+GFV D+ E + A+ ++G
Sbjct: 225 VF-SEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 12/173 (6%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++ +L +D LH F+S G I S KV + +G S+GYGFV+F + A+K ++
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 147 AGVLMPNTDQ----PFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVY 202
G+L+ N Q PF STG++ N ++FV +L+ TD L +TF +
Sbjct: 183 NGMLL-NDKQVYVGPFLRKQERESTGDRAKFN----NVFVKNLSESTTDDELKKTFGE-F 236
Query: 203 PSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
++ +A V+ D + G+SK +GFV F ++ ++A+ +NG + +G A
Sbjct: 237 GTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKA 288
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 81 NIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAE 140
N +++VGDL + ++ L+ F G++ S++V R+ T S GYG+V + + A
Sbjct: 30 NFVTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAA 89
Query: 141 KVLQ--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETF 198
+ L N+ P ++P R+ ++ + S +IF+ +L + LH+TF
Sbjct: 90 RALDVLNFT----PLNNRPIRIMYSHRDPSIRKS---GQGNIFIKNLDKAIDHKALHDTF 142
Query: 199 ASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
+S + ++ + KV D +G+SKGYGFV+F + +A+ ++NG+ + + + +G
Sbjct: 143 SS-FGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVG 195
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L ++ L + F G I+S V+R+ G S+ +GFV F S A + ++
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEAL 273
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLH 195
Y G +++ L + ++ +D +++V +L + D L
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 333
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
E F+S Y ++ + KV+ D N G S+G GFV F E S+A+ +MNG +S+P+ + A
Sbjct: 334 ELFSS-YGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 391
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+++ ++VG+L + + L + F G + S++++ + T S G+ FV + AE+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 143 LQNYAGVLMPNTDQPFRLNWATFS-TGEKTSDNV-------SDLSIFVGDLAADVTDSLL 194
++ + G + + ++N+ G++ S I+ G+L D+T L
Sbjct: 166 IRMFDGTTV--GGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYL 223
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
+ FA P + +AKVV++ N G+S+GYGFV F + A++ MNGV RP+R+
Sbjct: 224 RKAFAK-QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKL 282
Query: 255 AT 256
A
Sbjct: 283 AV 284
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+++ ++VG+L + + L + F G + S++++ + T S G+ FV + AE+
Sbjct: 106 QSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEA 165
Query: 143 LQNYAGVLMPNTDQPFRLNWATFS-TGEKTSDNV-------SDLSIFVGDLAADVTDSLL 194
++ + G + + ++N+ G++ S I+ G+L D+T L
Sbjct: 166 IRMFDGTTV--GGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYL 223
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
+ FA P + +AKVV++ N G+S+GYGFV F + A++ MNGV RP+R+
Sbjct: 224 RKAFAK-QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKL 282
Query: 255 AT 256
A
Sbjct: 283 AV 284
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 94/176 (53%), Gaps = 11/176 (6%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATA 139
N +++VGDL ++++ L+ F G++ S++V R+ T S GYG+V F + A
Sbjct: 27 NQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA 86
Query: 140 EKVLQ--NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
+ L N+ P ++ R+ +S + +S +IF+ +L + LH+T
Sbjct: 87 ARALDVLNFT----PMNNKSIRV---MYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDT 139
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
F+S + + + K+ D +G+SKGYGFV+F ++ A+ ++NG+ + + + +G
Sbjct: 140 FSS-FGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVG 193
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 80 NNIENKT----VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS 135
+N+ +KT V+V +L E+ L F + G I+S ++R+ G S+ +GFV F +
Sbjct: 202 DNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFEN 260
Query: 136 HATAEKVLQN-----------YAGVLMPNTDQPFRLNWATFST-GEKTSDNVSDLSIFVG 183
A K ++ Y G +++ L T E D L++++
Sbjct: 261 AEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLK 320
Query: 184 DLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGV 243
+L +TD L E F S + ++ + K++ D N G S+G GFV F E S+A+ +MNG
Sbjct: 321 NLDDSITDEKLKEMF-SEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEMNGK 378
Query: 244 YCSSRPMRIGAA 255
S+P+ + A
Sbjct: 379 MIVSKPLYVAVA 390
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 5/174 (2%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++ G+L + +D L G I+V+ ++ TG S G+ FV V+QN
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 147 AGV-LMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
G M T R+N++ ++ ++ +FVG+LA VT L + F + +V
Sbjct: 175 DGKEFMGRT---LRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQE-HGTV 230
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
A+V+FD TG+S+GYGFV + +E A+ M+ V R +R+ A ++
Sbjct: 231 VGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGKR 284
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L +D + L F G I S KV+ + + G S+GYGFV+F + +A ++
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERL 158
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSD------LSIFVGDLAADVTDSLLHETFAS 200
G L+ + ++ F K SD +S ++++ +L D++++LL E F+S
Sbjct: 159 NGYLVGDK----QIYVGKFV---KKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSS 211
Query: 201 VYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 258
+ + + V D+N G SKG+GFV F + + +AM MNG+ S+ + + A +
Sbjct: 212 -FGKIISLAVAKDSN-GMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKK 267
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 92/170 (54%), Gaps = 11/170 (6%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQ- 144
+++VGDLH + ++ LH F+ ++S+++ R+ +G S YG+V F S A + ++
Sbjct: 11 SLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEV 70
Query: 145 -NYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
N++ + + R+ W+ + S ++FV +LA + +S L + F +
Sbjct: 71 KNHSTL----NGKAIRVMWSRRDPDARKS---CIGNVFVKNLAESIDNSGLEDMFKK-FG 122
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
++ ++KVV + G+SKGYGFV+F + + A+ ++NG + + +G
Sbjct: 123 NILSSKVVMSED-GKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVG 171
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 14/180 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++ +L + E L F+S G+I S+ V ++ G+S+G+GFV F + A++ ++
Sbjct: 191 LYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETM 249
Query: 147 AGVLMPNT--------DQPFRLNWATFSTGEKTSDNV---SDLSIFVGDLAADVTDSLLH 195
G+ + + + R EK + V +I+V ++ +V+D L
Sbjct: 250 NGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLR 309
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+ F SV ++ +AK++ D + G SKG+GFV F E ++A+ +G +P+ + A
Sbjct: 310 DHF-SVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLA 367
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
++VG+L M + L FA G + S++++ ++ T S G+ FV S A++ ++ +
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 147 AGVLMPNTDQPFRLNWAT-------FSTGEKTSDNV-----SDLSIFVGDLAADVTDSLL 194
G + + ++N+ G+K ++ S I+ G+L + L
Sbjct: 171 DGSQV--GGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDL 228
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
+ F P + AK++++ + GRS+G+GFV F A+ MNGV RP+R+
Sbjct: 229 RDAFDE-QPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNL 287
Query: 255 ATPR 258
A R
Sbjct: 288 AAAR 291
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 24/196 (12%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFV------------ 131
N+ ++VG+L +D L F + G++ ++VI +K TG S G+GFV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 132 -EFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEK--------TSDNVSDLSIFV 182
+ + + L+ AG P + R G++ +SD D + V
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG--DNRVHV 200
Query: 183 GDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
G+LA V D+L E+ V AKV++D +GRS+G+GFV F +E A+ ++G
Sbjct: 201 GNLAWGV-DNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
Query: 243 VYCSSRPMRIGAATPR 258
+ R +R+ A R
Sbjct: 260 ADLNGRAIRVSPADSR 275
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 164 TFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 223
TF G+ T + +FVG+L V + L E F + V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 224 FVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
FV E A Q+NG R +R+ A P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 24/196 (12%)
Query: 84 NKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFV------------ 131
N+ ++VG+L +D L F + G++ ++VI +K TG S G+GFV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 132 -EFYSHATAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEK--------TSDNVSDLSIFV 182
+ + + L+ AG P + R G++ +SD D + V
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDG--DNRVHV 200
Query: 183 GDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
G+LA V D+L E+ V AKV++D +GRS+G+GFV F +E A+ ++G
Sbjct: 201 GNLAWGV-DNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDG 259
Query: 243 VYCSSRPMRIGAATPR 258
+ R +R+ A R
Sbjct: 260 ADLNGRAIRVSPADSR 275
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 164 TFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYG 223
TF G+ T + +FVG+L V + L E F + V+ +V++D +TGRS+G+G
Sbjct: 70 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYDKSTGRSRGFG 128
Query: 224 FVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
FV E A Q+NG R +R+ A P
Sbjct: 129 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPP 162
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 90/170 (52%), Gaps = 11/170 (6%)
Query: 86 TVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV--L 143
T++VGDLH + + L++ F+ + S +V ++ TG S YG+V SH A + L
Sbjct: 16 TLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIEL 75
Query: 144 QNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYP 203
+N++ + + R+ W + + S ++FV +LAA + + LH+ F Y
Sbjct: 76 KNHSSL----NGKVIRVMWLSRDADARKSGKG---NVFVKNLAASIDNVGLHDLFQK-YG 127
Query: 204 SVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIG 253
++ ++K+ + G+SKG+G+++F + + A+ +MNG + + +G
Sbjct: 128 NILSSKIA-RSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVG 176
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L +D LH F G I S K+ R+ + G S+G+G+++F S +A +Q
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDL-----SIFVGDLAADVTDSLLHETFASV 201
G +T + ++ F K+ ++ DL +++V +L VT+ L E F+S
Sbjct: 164 NG----STVRDKQIYVGKFI--RKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSS- 216
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPR 258
+ + + + D N G+SKG+GFV + ++ +AM M+G S+ + + A +
Sbjct: 217 FGKIVSLAIKKDEN-GQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKK 272
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
++V +L + E +L F+S G+I S+ I+ + G S+G+GFV + S A + ++
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSL-AIKKDENGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 146 ----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLH 195
Y ++ L+ G K + +I+V ++ V D L
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQILHHLFVEKGLKHMGS----NIYVKNIDTSVGDEELR 310
Query: 196 ETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
+ F S V +AKV+ D + G SKG+GFV F E ++M+ NG +P+ + A
Sbjct: 311 DHF-SACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFA 368
Query: 256 TPRK 259
++
Sbjct: 369 QKKE 372
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 177 DLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQA 236
D +F GDL +V D +L + F + +PS A+VV D TG++KGYGF+ F + + + A
Sbjct: 131 DYRLFCGDLGNEVNDDVLSKAF-TRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAA 189
Query: 237 MTQMNGVYCSSRPMRI 252
+ +MNG Y +RP+++
Sbjct: 190 LKEMNGKYVGNRPIKL 205
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVL--- 143
V+VG + ++ E+ +H F G I+ I + TG G + F + A A++ L
Sbjct: 222 VYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALALD 281
Query: 144 -QNYAGVLMPNTDQPFRLNWATFSTGE-KTSDNVSDLSIFVGDLAADVTDSLLHETFASV 201
+ G+ + QP + AT T E K N I+VG L+ ++T+ L + F++
Sbjct: 282 GADMGGLFL--KIQPCKATQATRFTPEMKEGYN----RIYVGSLSWEITEEELRKFFSNC 335
Query: 202 YPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATP 257
+VKA ++ D TG +GY V FGD A+ ++ RP+RI A P
Sbjct: 336 --NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALA-LDQSVLFGRPVRISCAVP 388
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
V+V +L +D LH FA+ G + S KV + G S GYGFV++ +H +A+ ++
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALD-SNGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSD--LSIFVGDLAADVTDSLLHETFASVYPS 204
G+L+ + + F ++ S+N S +++V +L TD L + F S Y
Sbjct: 76 DGMLIKDK----KAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLF-STYGV 130
Query: 205 VKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
+ +A ++ D N G SK +GFV F + + A+ ++NG
Sbjct: 131 ITSAVIMKDEN-GNSKCFGFVNFQSPDSAAAAVEKLNG 167
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 15/181 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
V+V +L + L + F++ G I+S VI + G S+ +GFV F S +A ++
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITS-AVIMKDENGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 146 -----------YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLL 194
Y G ++ L K + + ++++ +L + D L
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGA 254
E F S + ++ + KV+FDA+ G SKG+GFV F E S+A+ M+G +P+ +
Sbjct: 226 KEMF-SEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVV 283
Query: 255 A 255
A
Sbjct: 284 A 284
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + +E+ L + F + G++ +++++ TG + G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 147 ---------AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A +P DQ + S G + IFVG LA+ VT+S
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + ++ V++D NT R +G+GF+ +
Sbjct: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITY 154
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + +E+ L + F + G++ +++++ TG + G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 147 ---------AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A +P DQ + S G + IFVG LA+ VT+S
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + ++ V++D NT R +G+GF+ +
Sbjct: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITY 154
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + +E+ L + F + G++ +++++ TG + G+GFV F + AE+V+
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 147 ---------AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A +P DQ + S G + IFVG LA+ VT+S
Sbjct: 66 HVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNY 125
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + ++ V++D NT R +G+GF+ +
Sbjct: 126 F-DQFGTITDVVVMYDHNTQRPRGFGFITY 154
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G L + F GEI+ ++++++TG G+GF+ + + +KV+++
Sbjct: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED- 105
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
+ ++ + R T G S + IFVG + ++VT+ + F + Y VK
Sbjct: 106 SHIINSKQVEIKR----TIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFF-TRYGEVK 160
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
+++ D +T RS+G+GFV F + ++ N + + + I A P+K
Sbjct: 161 DHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKK 213
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L FA+ GE+ ++R++ TG + G+GFV F A AE+V+ +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 147 ---------AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A +P DQ +N T S + + IFVG L + +T+S
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQ-NINRQTGSV-QGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + ++ V++D NT R +G+GF+ +
Sbjct: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 12/150 (8%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + DE L FA+ GE+ ++R++ TG + G+GFV F A AE+V+ +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 147 ---------AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHET 197
A +P DQ +N T S + + IFVG L + +T+S
Sbjct: 68 HIIDGRTVEAKKAVPRDDQQ-NINRQTGSV-QGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 198 FASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
F + ++ V++D NT R +G+GF+ +
Sbjct: 126 FDQ-FGTITDVVVMYDHNTQRPRGFGFITY 154
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ +TV+ + E ++ F+ G++ +++I ++ + S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 143 LQNYAGVLM--PNTDQP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSL 193
+ +L+ P +P + N T + G D ++VG+L ++T+S
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
L E F + +V+ ++ D TG KG+GF++F E ++A +NG
Sbjct: 333 LREIFEP-FGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ +TV+ + E ++ F+ G++ +++I ++ + S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 143 LQNYAGVLM--PNTDQP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSL 193
+ +L+ P +P + N T + G D ++VG+L ++T+S
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
L E F + +V+ ++ D TG KG+GF++F E ++A +NG
Sbjct: 333 LREIFEP-FGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ +TV+ + E ++ F+ G++ +++I ++ + S+G G++EFY +
Sbjct: 213 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 272
Query: 143 LQNYAGVLM--PNTDQP-------FRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSL 193
+ +L+ P +P + N T + G D ++VG+L ++T+S
Sbjct: 273 IALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQ 332
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG 242
L E F + +V+ ++ D TG KG+GF++F E ++A +NG
Sbjct: 333 LREIFEP-FGTVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKAAQSLNG 379
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G L + F GEI+ +++++ TG G+GF+ + + ++V+Q
Sbjct: 20 IFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQEN 79
Query: 147 AGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSVK 206
+ D+ + T G +++ IFVG + A V++ L + F S + +V
Sbjct: 80 HII----NDKQVEIKR-TIPKGASQTNDFKTKKIFVGGIPATVSEDEL-KIFFSKHGNVV 133
Query: 207 AAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRK 259
+++ D T RS+G+GFV F D + N + + I A P+K
Sbjct: 134 EHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPKK 186
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
++ +++G + +E L F++ GE+ +++++ TG + G+GFV F A A+ V
Sbjct: 4 DSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIV 63
Query: 143 LQ---NYAGVL------MPNTDQPFRLNWATFSTG--EKTSDNVSDLSIFVGDLAADVTD 191
+Q N G + +P DQ N + ++G + IFVG LA+ VT+
Sbjct: 64 VQEKHNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 192 SLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
S + F + ++ V++D NT R +G+GF+ + + Q + +
Sbjct: 120 SDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
++ +++G + +E L F++ GE+ +++++ TG + G+GFV F A A+ V
Sbjct: 4 DSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIV 63
Query: 143 LQ---NYAGVL------MPNTDQPFRLNWATFSTG--EKTSDNVSDLSIFVGDLAADVTD 191
+Q N G + +P DQ N + ++G + IFVG LA+ VT+
Sbjct: 64 VQEKHNIDGRMVEAKKAVPRDDQ----NVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 192 SLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
S + F + ++ V++D NT R +G+GF+ + + Q + +
Sbjct: 120 SDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLK 166
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 78 SNNNIENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHA 137
++ + + ++V L L F+S G++ VI +K TG S+GYGFV Y H
Sbjct: 69 ADRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFV-VYRHV 127
Query: 138 TAEKVLQNYAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVT-DSLLHE 196
+ + P+ R+ + T +VS +FVG++ +V+ +SLL E
Sbjct: 128 DGAVL-----ALKEPSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSE 182
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRF----GDDNERSQAMTQMNG--VYC 245
S Y ++ + FD +G+++G+ F + G N +++M ++G V C
Sbjct: 183 F--SKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQVIC 235
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 175 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 234
+S +F+G ++ ++ L E F S Y V AK++ D +TGRS+G+GF+ F E S
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEAS 95
Query: 235 QAMTQMNGVYCSSRPMRIGAATPR 258
A+ M+ R +R+ AT R
Sbjct: 96 SALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 175 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 234
+S +F+G ++ ++ L E F S Y V AK++ D +TGRS+G+GF+ F E S
Sbjct: 37 MSSAKLFIGGVSYSTDETGLREAF-SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEAS 95
Query: 235 QAMTQMNGVYCSSRPMRIGAATPR 258
A+ M+ R +R+ AT R
Sbjct: 96 SALQAMDNKELDGRTVRVNYATER 119
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 174 NVSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNER 233
++S ++VG ++ D+ L E+FA Y V A+V+ D GRSKG+GFV F E
Sbjct: 36 SMSSAKLYVGGISYSTDDAGLRESFAR-YGDVLDARVIIDREQGRSKGFGFVTFATSEEA 94
Query: 234 SQAMTQMNGVYCSSRPMRIGAATPR 258
S A+ M+ R +R+ A R
Sbjct: 95 SAALQAMDNQELHGRTVRVNYAQER 119
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 11/179 (6%)
Query: 85 KTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYS----HATAE 140
+ ++VG++ + + L + G + +V+ +K + S + FV + +A AE
Sbjct: 60 RKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAE 119
Query: 141 KVLQNYAG---VLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVT-DSLLHE 196
K+ G + + T++P GE T + S ++VG+LA +VT DSL +
Sbjct: 120 KLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVD-SPYKVYVGNLAKNVTSDSL--K 176
Query: 197 TFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAA 255
F S + +AKV T +S G+GFV F D + A++ N + +R+ A
Sbjct: 177 KFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 83 ENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKV 142
+ +TV+ + E ++ F+ G++ +++I ++ + S+G G++EFY +
Sbjct: 200 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMA 259
Query: 143 LQNYAGVLM--PNTDQPFR----LNWATFSTGEKTSD--NVSDLSIFVGDLAADVTDSLL 194
+ +L+ P +P L + S+G D ++VG+L ++T++ L
Sbjct: 260 IALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANL 319
Query: 195 HETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNG-VYCSSRPMRIG 253
E F + ++ ++ D TG KG+GFV+F E ++A +NG + + R +++
Sbjct: 320 REIFEP-FGQIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQSLNGKLEIAGRTIKVS 377
Query: 254 AAT 256
+ T
Sbjct: 378 SVT 380
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+FVG L+ V + L + F+S + V ++V+D ++GR++G+GFV F +++ A
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSS-FGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 240 MNGVYCSSRPMRIGAA--TPR 258
M+G RP+RI A PR
Sbjct: 97 MDGKALLGRPLRINFALEKPR 117
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + +E L F++ G++ + V+R K TG G+GFV F + ++VL++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 147 ---------AGVLMPNTDQPFRLNWATFST----GEKTSDNVSDLSIFVGDLAADVTDSL 193
A DQ ++ + ++ N+ IFVG L + +
Sbjct: 68 HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEK 127
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
+ F Y V V++D NTGR +G+GF+ F
Sbjct: 128 FRQYF-EAYGHVTDVVVMYDQNTGRPRGFGFITF 160
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNY 146
+++G + +E L F++ G++ + V+R K TG G+GFV F + ++VL++
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 147 ---------AGVLMPNTDQPFRLNWATFST----GEKTSDNVSDLSIFVGDLAADVTDSL 193
A DQ ++ + ++ N+ IFVG L + +
Sbjct: 68 HVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEK 127
Query: 194 LHETFASVYPSVKAAKVVFDANTGRSKGYGFVRF 227
+ F Y V V++D NTGR +G+GF+ F
Sbjct: 128 FRQYF-EAYGHVTDVVVMYDQNTGRPRGFGFITF 160
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 175 VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERS 234
+S +F+G L+ +V D L + F + Y V A+V+ D TGRS+G+GFV F + +
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAF-TTYGDVVEARVITDRETGRSRGFGFVNFTSEESAT 91
Query: 235 QAMTQMNGVYCSSRPMRIGAATPRK 259
A++ M+G + R +R+ A R+
Sbjct: 92 SALS-MDGQDLNGRNIRVSYANDRQ 115
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 176 SDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQ 235
S +F+ L+ + +++L +TF + + KV+ + TG SKGYGFVRF + +
Sbjct: 31 SSTKLFIAGLSYNTNETVLRDTFEQ-HGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 236 AMTQMNGVYCSSRPMRIGAA 255
A +++G R +R+G A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 178 LSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAM 237
+FVG L+ T+ L + F++ Y V AKV+ D + +SKGYGFV F +E +A+
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSN-YGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 238 TQMNGVYCSSRPMRIGAATP 257
T+MN + R + + A P
Sbjct: 91 TEMNEKALNGRVVFVDYAKP 110
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 179 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 238
S+ V +L+ D + LHE F + + SV V D NTG S+G+GFV F + + +A+
Sbjct: 200 SVRVTNLSEDTREPDLHELFGT-FGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAIN 258
Query: 239 QMNGVYCSSRPMRIGAATPR 258
++NG + +++ ATPR
Sbjct: 259 KLNGYGYDNLILKVEWATPR 278
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 87 VWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQN- 145
++VG + E + F G + + +I++++TG +G F+++ + A++ ++
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 146 YAGVLMPNTDQPFRLNWATFSTGEKTSDNVSDLSIFVGDLAADVTDSLLHETFASVYPSV 205
+ +P P ++ +A GE+ + +FVG L + + E F S Y +
Sbjct: 150 HNRHTLPGGVGPIQVRYA---DGERERLGAVEYKLFVGSLNKQASVKEVEEVF-SKYGRI 205
Query: 206 KAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYC---SSRPMRIGAATPRK 259
+ ++ D + +S+G GFV++ + A+ +NG+Y +P+ + A P++
Sbjct: 206 EDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKR 261
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 179 SIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMT 238
+++VG LA +V +S+LH F + +K K D T + + +GFV F + + S AM
Sbjct: 11 TLYVGGLAEEVNESILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMD 69
Query: 239 QMNGVYCSSRPMRIGAATPRK 259
M+G R + + A P K
Sbjct: 70 NMDGAELYGRVLTVNYALPEK 90
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 101 LHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYAGVLMPNTDQPFRL 160
L F++ GE+ VI +K TG S+GYGFV F A L+ P+ R+
Sbjct: 89 LRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALRE------PSKRIDGRV 142
Query: 161 NWATFSTGEKTSDN-----VSDLSIFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDAN 215
+ + N V+ I+V ++ D+ L F S+Y ++ + FD
Sbjct: 143 TVTQLAAAGNSGSNTNAADVAQRKIYVSNVPPDLPGDKLLAHF-SIYGEIEEGPLGFDKQ 201
Query: 216 TGRSKGYGF 224
TGRSKG+
Sbjct: 202 TGRSKGFAL 210
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 180 IFVGDLAADVTDSLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQ 239
+F+G ++ ++ L E F S Y V A+++ D TGRS+G+GF+ F E S A+
Sbjct: 44 LFIGGVSYSTDENSLREAF-SRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 240 MNGVYCSSRPMRIGAATPR 258
++G R +R+ A R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 80 NNIENKTVWVGDLHHWMDENYLHRCFAS---TGEISSIKVIRNKQTG--LSEGYGFVEFY 134
+ IE ++++V +L+ + L F+ G I S+KV ++ + G +S G+GFVEF
Sbjct: 636 DRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFD 695
Query: 135 SHATAEKVLQNYAGVLMPNTDQPFRLNWAT---FSTGEKTSDNVSDLSIFVGDLAADVTD 191
S TA V + G ++ +L +K + S + V ++A + T+
Sbjct: 696 STETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSSTKLLVKNVAFEATE 755
Query: 192 SLLHETFASVYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMR 251
L + F S + +K+ ++ G +G+ FV + E A+T ++ + R +
Sbjct: 756 KDLRQLF-SPFGQIKSLRLPM--KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLV 812
Query: 252 IGAA 255
I A
Sbjct: 813 IERA 816