Miyakogusa Predicted Gene

Lj5g3v0014200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v0014200.1 Non Characterized Hit- tr|B9G6H3|B9G6H3_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,44.44,6e-19,
,CUFF.52531.1
         (133 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g072940.2 | PPR containing protein, putative | HC | chr2:3...   191   2e-49
Medtr2g072940.1 | PPR containing protein, putative | HC | chr2:3...   190   3e-49
Medtr2g072940.3 | PPR containing protein, putative | HC | chr2:3...    81   3e-16
Medtr2g072940.4 | PPR containing protein, putative | HC | chr2:3...    81   3e-16

>Medtr2g072940.2 | PPR containing protein, putative | HC |
           chr2:30865683-30858113 | 20130731
          Length = 302

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 112/135 (82%), Gaps = 4/135 (2%)

Query: 1   MLTAVQASRFDHWMGPTIRMSLPSFSGGTECNPNLLKYSCKIECRVQAVQPLKVSRSIPI 60
           + +AV   RFD WMGPTI+MSLPSFSGGTE NPNLLKYSC+IECRVQAV+PLKVSRS P+
Sbjct: 170 LTSAVPDLRFDRWMGPTIKMSLPSFSGGTEFNPNLLKYSCQIECRVQAVKPLKVSRSFPL 229

Query: 61  TN-DDDNEKSLEDYGSSSHEAKDHENDRQNFSTCVMLSKPILALKFNQMKMQVEAPVVLS 119
           TN DD +++SL+DY  S H  KDHE  +QNFST VMLSKPILALKF+QMKMQVEAP+VL 
Sbjct: 230 TNVDDKDQQSLQDYEGSIHMTKDHE--KQNFSTYVMLSKPILALKFDQMKMQVEAPIVLY 287

Query: 120 QSLNSLE-TSVTSVP 133
              NSLE T+ +SVP
Sbjct: 288 HCPNSLEPTTFSSVP 302


>Medtr2g072940.1 | PPR containing protein, putative | HC |
           chr2:30865300-30858358 | 20130731
          Length = 303

 Score =  190 bits (483), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/133 (72%), Positives = 110/133 (82%), Gaps = 4/133 (3%)

Query: 3   TAVQASRFDHWMGPTIRMSLPSFSGGTECNPNLLKYSCKIECRVQAVQPLKVSRSIPITN 62
            AV   RFD WMGPTI+MSLPSFSGGTE NPNLLKYSC+IECRVQAV+PLKVSRS P+TN
Sbjct: 173 AAVPDLRFDRWMGPTIKMSLPSFSGGTEFNPNLLKYSCQIECRVQAVKPLKVSRSFPLTN 232

Query: 63  -DDDNEKSLEDYGSSSHEAKDHENDRQNFSTCVMLSKPILALKFNQMKMQVEAPVVLSQS 121
            DD +++SL+DY  S H  KDHE  +QNFST VMLSKPILALKF+QMKMQVEAP+VL   
Sbjct: 233 VDDKDQQSLQDYEGSIHMTKDHE--KQNFSTYVMLSKPILALKFDQMKMQVEAPIVLYHC 290

Query: 122 LNSLE-TSVTSVP 133
            NSLE T+ +SVP
Sbjct: 291 PNSLEPTTFSSVP 303


>Medtr2g072940.3 | PPR containing protein, putative | HC |
           chr2:30865520-30858174 | 20130731
          Length = 220

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 1   MLTAVQASRFDHWMGPTIRMSLPSFSGGTECNPNLLKYSCKIECR 45
           + +AV   RFD WMGPTI+MSLPSFSGGTE NPNLLKYSC+IECR
Sbjct: 170 LTSAVPDLRFDRWMGPTIKMSLPSFSGGTEFNPNLLKYSCQIECR 214


>Medtr2g072940.4 | PPR containing protein, putative | HC |
           chr2:30865683-30858113 | 20130731
          Length = 220

 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/45 (77%), Positives = 39/45 (86%)

Query: 1   MLTAVQASRFDHWMGPTIRMSLPSFSGGTECNPNLLKYSCKIECR 45
           + +AV   RFD WMGPTI+MSLPSFSGGTE NPNLLKYSC+IECR
Sbjct: 170 LTSAVPDLRFDRWMGPTIKMSLPSFSGGTEFNPNLLKYSCQIECR 214