Miyakogusa Predicted Gene

Lj4g3v3116180.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3116180.1 CUFF.52709.1
         (215 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g079900.1 | photosystem I reaction center subunit XI | HC ...   311   2e-85

>Medtr7g079900.1 | photosystem I reaction center subunit XI | HC |
           chr7:30357636-30356399 | 20130731
          Length = 214

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/215 (74%), Positives = 166/215 (77%), Gaps = 1/215 (0%)

Query: 1   MAAASPMASQLKSTFTRPSLVTPKXXXXXXXXXXXXXRRQFTFTVKAIQSEKPTYQVIQP 60
           MAAASPMASQLKS+FTRP LVTP+             RRQF FTVKAIQSEKP YQVIQP
Sbjct: 1   MAAASPMASQLKSSFTRP-LVTPRGLCGSSPLHQLPSRRQFNFTVKAIQSEKPNYQVIQP 59

Query: 61  INGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGP 120
           INGDPFIGSLETPVTSSPLVAWYLSNLP YRTAVNPLLRG+EVGLAHGF LVGPFVKAGP
Sbjct: 60  INGDPFIGSLETPVTSSPLVAWYLSNLPGYRTAVNPLLRGIEVGLAHGFFLVGPFVKAGP 119

Query: 121 LRNTEYXXXXXXXXXXXXXXXXXXCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQLQTA 180
           LRNTEY                  CLTIYG+SSFNEGDPS APSLTLTGRKK PD LQTA
Sbjct: 120 LRNTEYAGSAGSLAAAGLIVILSICLTIYGVSSFNEGDPSIAPSLTLTGRKKQPDPLQTA 179

Query: 181 DGWAKXXXXXXXXXISGVTWAYFLLYVLDLPYYFK 215
           DGW+K         ISGVTWAYFLLYVLDLPY+ K
Sbjct: 180 DGWSKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 214