Miyakogusa Predicted Gene
- Lj4g3v3114830.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3114830.1 tr|J7JYT7|J7JYT7_LOTJA NARROW ORGAN 1 OS=Lotus
japonicus GN=NAO1 PE=2 SV=1,91.26,0,no description,Homeodomain-like;
seg,NULL; Homeobox,Homeodomain; HOMEOBOX_2,Homeodomain;
Homeodomain,gene.g58176.t1.1
(336 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g107210.1 | stenofolia-like protein | HC | chr8:45305362-4... 364 e-101
Medtr3g088485.1 | wuschel-related homeobox-like protein | HC | c... 147 1e-35
Medtr8g095580.1 | wuschel-related homeobox-like protein | HC | c... 144 2e-34
Medtr4g084550.1 | wuschel-related homeobox protein | HC | chr4:3... 128 6e-30
Medtr7g060630.1 | wuschel-related homeobox protein | HC | chr7:2... 109 3e-24
Medtr1g019130.2 | wuschel-related homeobox protein | HC | chr1:5... 106 3e-23
Medtr1g019130.1 | wuschel-related homeobox protein | HC | chr1:5... 105 8e-23
Medtr4g063735.1 | wuschel-related homeobox protein | HC | chr4:2... 103 2e-22
Medtr5g021930.1 | wuschel-related homeobox protein | HC | chr5:8... 103 2e-22
Medtr5g081990.1 | wuschel-related homeobox protein | HC | chr5:3... 102 5e-22
Medtr7g025010.1 | wuschel-related homeobox protein, putative | L... 76 4e-14
Medtr2g015000.1 | wuschel homeobox protein | HC | chr2:4393059-4... 76 5e-14
Medtr4g088070.1 | wuschel homeobox protein | LC | chr4:34685878-... 72 1e-12
Medtr7g023810.1 | homeodomain protein HB2 | HC | chr7:7798636-77... 70 3e-12
Medtr1g115315.2 | wuschel-related homeobox protein | HC | chr1:5... 67 2e-11
Medtr1g115315.1 | wuschel-related homeobox protein | HC | chr1:5... 67 3e-11
Medtr4g088080.1 | wuschel homeobox protein | LC | chr4:34693672-... 66 4e-11
Medtr3g115620.1 | wuschel-related homeobox protein | HC | chr3:5... 62 6e-10
Medtr6g027390.1 | wuschel-related homeobox protein | HC | chr6:9... 58 1e-08
Medtr7g086940.1 | wuschel-related homeobox protein | HC | chr7:3... 56 5e-08
>Medtr8g107210.1 | stenofolia-like protein | HC |
chr8:45305362-45303362 | 20130731
Length = 358
Score = 364 bits (935), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/383 (57%), Positives = 253/383 (66%), Gaps = 77/383 (20%)
Query: 1 MVGYNESGAEFNMADYPFNGRKLRPLMPRPI----------------------------- 31
MVGYNE G EFNMADYPF+GRKLRPL+PRP+
Sbjct: 3 MVGYNE-GGEFNMADYPFSGRKLRPLIPRPVPVPTTSPNNTSTITPSLNRIHGGNDLFSQ 61
Query: 32 --HLL---ASVTEQNKR-EFN-----TPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAE 80
H L ASV + +KR E N + VVVSSRWNPTPEQLRALEELYRRGTRTPSAE
Sbjct: 62 YHHNLQQQASVGDHSKRSELNNNNNPSAAVVVSSRWNPTPEQLRALEELYRRGTRTPSAE 121
Query: 81 QIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESEAEGPPRDFESSHHDKKDL 140
QIQQITAQLR+FGKIEGKNVFYWFQNHKARERQKRRRQMES A +F+S+ +KKDL
Sbjct: 122 QIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKRRRQMESAAA----EFDSA-LEKKDL 176
Query: 141 GASRTVFEVEQTKNNWPSSTNCTST--LAEESVSIQSXXXXXXXXXECSRTDGWLQFDEG 198
GASRTVFEVE TKN PS+ + TST LAEESVSIQ ++ DGWLQFDE
Sbjct: 177 GASRTVFEVEHTKNWLPSTNSSTSTLHLAEESVSIQ-------RSAAAAKADGWLQFDEA 229
Query: 199 ELQQQRRNFMERNATWRMMQF--PCPPQPPHFINTPPQYXXXXXXXXXXXXRLMDQKLIK 256
EL QQRRNFMERNATW MMQ CP RLMD KLIK
Sbjct: 230 EL-QQRRNFMERNATWHMMQLTSSCP-------------TASMSTTTTVTTRLMDPKLIK 275
Query: 257 THADLSFFISPHTRE--NNSIIHLSSFTTEDNVESQTLQLFPLRNGD-GSSENSNQHH-- 311
TH +L+ FISPHT + N+ IHL++ +T N QTLQLFP+RNGD G +++ + H+
Sbjct: 276 TH-ELNLFISPHTYKERENAFIHLNTSSTHQNESDQTLQLFPIRNGDHGCTDHHHHHNII 334
Query: 312 KETEISVSAMNAPSQFFEFLPLK 334
KET+IS SA+NAP+QF EFLPLK
Sbjct: 335 KETQISASAINAPNQFIEFLPLK 357
>Medtr3g088485.1 | wuschel-related homeobox-like protein | HC |
chr3:40220146-40220726 | 20130731
Length = 163
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/145 (60%), Positives = 91/145 (62%), Gaps = 29/145 (20%)
Query: 1 MVGYNESGAEFNMADYPFNGRKLRPLMPRPIHLLASVTEQNKREFNTPPVVVSSRWNPTP 60
MVGYNE G EFNMADYPF GRKLRPLMPRP+ L T N TP + N
Sbjct: 3 MVGYNE-GGEFNMADYPFCGRKLRPLMPRPV--LVPTTSPNNTSTITPSLNRIHGGNDLF 59
Query: 61 EQ----LR----------------------ALEELYRRGTRTPSAEQIQQITAQLRRFGK 94
Q LR +EELYRRGTRTP AEQIQQITAQLR+FGK
Sbjct: 60 SQYHHNLRQQASVGDHSKRSELNNNNNSSATVEELYRRGTRTPYAEQIQQITAQLRKFGK 119
Query: 95 IEGKNVFYWFQNHKARERQKRRRQM 119
IEGKNVFYWFQNHKARERQKRRRQM
Sbjct: 120 IEGKNVFYWFQNHKARERQKRRRQM 144
>Medtr8g095580.1 | wuschel-related homeobox-like protein | HC |
chr8:40005406-40004827 | 20130731
Length = 165
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 88/145 (60%), Gaps = 27/145 (18%)
Query: 1 MVGYNESGAEFNMADYPFNGRKLRPLMPRPIHLLASVTEQNKREFNTPPVVVSSRWNPTP 60
MVGY+E G EFNMADYP GRKLRPLM RP+ + T N TP + N
Sbjct: 3 MVGYSE-GGEFNMADYPLCGRKLRPLMSRPVPIPVPTTSPNNTSTITPSLNRIHGGNDLF 61
Query: 61 EQLR--------------------------ALEELYRRGTRTPSAEQIQQITAQLRRFGK 94
Q A+EELYRRGTRTPSAEQIQQITAQLR+ GK
Sbjct: 62 SQYHHNLQQQASVGDHSKRSELNNNNNPSAAVEELYRRGTRTPSAEQIQQITAQLRKIGK 121
Query: 95 IEGKNVFYWFQNHKARERQKRRRQM 119
IEGKNVFYWFQNHKARERQKRRRQM
Sbjct: 122 IEGKNVFYWFQNHKARERQKRRRQM 146
>Medtr4g084550.1 | wuschel-related homeobox protein | HC |
chr4:32905916-32907479 | 20130731
Length = 184
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
SSRW+PTP QL LEELYR+G +TPSAEQIQQI +QLR+FGKIEGKNVFYWFQNHKARER
Sbjct: 62 SSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARER 121
Query: 113 QKRRR-QMESEAEGPPRDFESSHHDKKDLGASRTVFEVEQTKNNWPSSTNCT 163
QKRRR +ME E + + K + T V++TK W +++NC+
Sbjct: 122 QKRRRLEMEETTEDKKEKEKYVMGNSKKQEGAETGGGVKETK-KWATTSNCS 172
>Medtr7g060630.1 | wuschel-related homeobox protein | HC |
chr7:21930278-21929162 | 20130731
Length = 206
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 56/67 (83%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
SSRW+PT EQL LEELYR G RTPSA QIQQIT L +G+IEGKNVFYWFQNHKAR+R
Sbjct: 6 SSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDR 65
Query: 113 QKRRRQM 119
QK RR++
Sbjct: 66 QKLRRKL 72
>Medtr1g019130.2 | wuschel-related homeobox protein | HC |
chr1:5704096-5705687 | 20130731
Length = 228
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 56/65 (86%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
+RWNPT EQ+ LE LYR G RTP+A+QI+QIT QL ++GKIEGKNVFYWFQNHKARER
Sbjct: 88 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARER 147
Query: 113 QKRRR 117
QK++R
Sbjct: 148 QKQKR 152
>Medtr1g019130.1 | wuschel-related homeobox protein | HC |
chr1:5704096-5705687 | 20130731
Length = 236
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/65 (72%), Positives = 56/65 (86%)
Query: 53 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARER 112
+RWNPT EQ+ LE LYR G RTP+A+QI+QIT QL ++GKIEGKNVFYWFQNHKARER
Sbjct: 88 GTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARER 147
Query: 113 QKRRR 117
QK++R
Sbjct: 148 QKQKR 152
>Medtr4g063735.1 | wuschel-related homeobox protein | HC |
chr4:23615955-23617663 | 20130731
Length = 257
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 57/64 (89%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNPT EQ+ LE LY++G +TPSAE+IQ+ITA+LR +G IEGKNVFYWFQNHKAR+RQK
Sbjct: 25 RWNPTKEQISMLENLYKQGIKTPSAEEIQEITARLRVYGHIEGKNVFYWFQNHKARQRQK 84
Query: 115 RRRQ 118
++++
Sbjct: 85 QKQE 88
>Medtr5g021930.1 | wuschel-related homeobox protein | HC |
chr5:8555099-8553751 | 20130731
Length = 302
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 58/65 (89%), Gaps = 1/65 (1%)
Query: 53 SSRWNPTPEQLRALEELY-RRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARE 111
S+RW PT +Q+R L++LY G R+PSAEQIQ+I+A+LR++GKIEGKNVFYWFQNHKARE
Sbjct: 28 STRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARE 87
Query: 112 RQKRR 116
RQK+R
Sbjct: 88 RQKKR 92
>Medtr5g081990.1 | wuschel-related homeobox protein | HC |
chr5:35185060-35183966 | 20130731
Length = 184
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 53/63 (84%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNPT EQ++ L EL+R G RTPS +QIQ+I+ QL +GKIE KNVFYWFQNHKARERQK
Sbjct: 33 RWNPTTEQVKLLTELFRAGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQK 92
Query: 115 RRR 117
RR+
Sbjct: 93 RRK 95
>Medtr7g025010.1 | wuschel-related homeobox protein, putative | LC |
chr7:8283410-8286927 | 20130731
Length = 590
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNP P+Q+R LE ++ G P E+I +I QL+ FG++ NVFYWFQN K+R +QK
Sbjct: 47 RWNPKPQQIRILEAIFNSGMVNPPREEITKIREQLQEFGQVGDANVFYWFQNRKSRSKQK 106
Query: 115 RR 116
+R
Sbjct: 107 KR 108
>Medtr2g015000.1 | wuschel homeobox protein | HC |
chr2:4393059-4395325 | 20130731
Length = 457
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RWNP PEQ+R LE ++ G P E+I++I AQL+ +G++ NVFYWFQN K+R + K
Sbjct: 55 RWNPKPEQIRILEAIFNSGMVNPPREEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114
Query: 115 RRR 117
R
Sbjct: 115 LRH 117
>Medtr4g088070.1 | wuschel homeobox protein | LC |
chr4:34685878-34688712 | 20130731
Length = 413
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW P PEQ+R LE +Y G + P ++I++I QL+ FG+I +VFYWFQN K++ + K
Sbjct: 29 RWIPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLQEFGQIGDASVFYWFQNRKSKGKNK 88
Query: 115 R 115
+
Sbjct: 89 K 89
>Medtr7g023810.1 | homeodomain protein HB2 | HC |
chr7:7798636-7797897 | 20130731
Length = 183
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW PTP QL++LE ++ T TPS E+I++ITA L + G+I +V+ WFQN +AR + K
Sbjct: 68 RWTPTPVQLQSLERIFEAETGTPSKEKIKEITADLTKHGQISETSVYNWFQNRRARSKGK 127
Query: 115 RRRQMESEAEGPPRDFESSHHDKK 138
++ + E P + E +DKK
Sbjct: 128 QQNNVNDE---PEVETEVDSNDKK 148
>Medtr1g115315.2 | wuschel-related homeobox protein | HC |
chr1:52025869-52029102 | 20130731
Length = 262
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW PTP QL+ LE ++ +G TPS E+I++I +L + G+I NV+ WFQN +AR ++K
Sbjct: 85 RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144
Query: 115 RRRQMESEAEGPPRDFESSHHDKK 138
+ S E + E DKK
Sbjct: 145 MQNGGTSNTESEV-ETEVDSKDKK 167
>Medtr1g115315.1 | wuschel-related homeobox protein | HC |
chr1:52025791-52029215 | 20130731
Length = 264
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW PTP QL+ LE ++ +G TPS E+I++I +L + G+I NV+ WFQN +AR ++K
Sbjct: 85 RWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRK 144
Query: 115 RRRQMESEAEGPPRDFESSHHDKK 138
+ S E + E DKK
Sbjct: 145 MQNGGTSNTESEV-ETEVDSKDKK 167
>Medtr4g088080.1 | wuschel homeobox protein | LC |
chr4:34693672-34695281 | 20130731
Length = 319
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 55 RWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQK 114
RW P PEQ+ LE +Y GT P ++I++I QL FG++ +VFYWFQN K R +
Sbjct: 40 RWIPKPEQIHILEAIYNSGTTNPRRDEIKKIREQLEEFGQVGDSSVFYWFQNRKYRSKTN 99
Query: 115 R 115
+
Sbjct: 100 K 100
>Medtr3g115620.1 | wuschel-related homeobox protein | HC |
chr3:54113734-54116409 | 20130731
Length = 215
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 16 YPFNGRKLRPLMPRPIHLLASVTEQNKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTR 75
+ G +L L P+ + S + R+ RW P P QL+ LE ++ G
Sbjct: 53 HDLAGLRLGNLYCDPLMMACSGHKITSRQ----------RWTPMPIQLQILERIFDEGNG 102
Query: 76 TPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 115
TP+ ++I+ IT +L + G+I NV+ WFQN +AR ++K+
Sbjct: 103 TPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 142
>Medtr6g027390.1 | wuschel-related homeobox protein | HC |
chr6:9379269-9376397 | 20130731
Length = 300
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQN 106
V SRW P PEQ+ LE ++ G P ++ +I L +FG + NVFYWFQN
Sbjct: 29 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQN 83
>Medtr7g086940.1 | wuschel-related homeobox protein | HC |
chr7:33813041-33816667 | 20130731
Length = 272
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 52 VSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWF 104
V SRW P PEQ+ LE ++ G P E+ +I L +FG + NVFYWF
Sbjct: 25 VRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWF 77