Miyakogusa Predicted Gene

Lj4g3v3114670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3114670.1 Non Characterized Hit- tr|H0UVL9|H0UVL9_CAVPO
Uncharacterized protein OS=Cavia porcellus GN=GOLGA5
P,30.37,0.00000000000002,coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
GOLGIN-84,NULL; seg,NULL; Golgin_A5,Golgin subfamily A m,CUFF.52412.1
         (646 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g107060.1 | coiled-coil vesicle tethering protein, putativ...   600   e-172
Medtr8g107060.2 | coiled-coil vesicle tethering protein, putativ...   206   5e-53
Medtr6g088595.1 | coiled-coil vesicle tethering protein, putativ...    67   5e-11

>Medtr8g107060.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr8:45231204-45223617 | 20130731
          Length = 667

 Score =  600 bits (1548), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 298/330 (90%), Positives = 311/330 (94%)

Query: 315 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 374
           MVAKLEGEK+SLEKILEERA QQAQEASQLQ+T METMEAVELEKQKHNNTRME+L RLA
Sbjct: 337 MVAKLEGEKESLEKILEERAKQQAQEASQLQSTMMETMEAVELEKQKHNNTRMEILTRLA 396

Query: 375 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGASRNL 434
           KLET NADLARSL AVQ NLEVEVKQVAELRQK+ SKE VHEELRRS+RNP QTGASRN 
Sbjct: 397 KLETANADLARSLTAVQWNLEVEVKQVAELRQKMASKESVHEELRRSLRNPNQTGASRNQ 456

Query: 435 LASKGVEFEREILEAELSLINDKVSQLQEKARKLEADIEMTRKEIEQPTEVEVELKRRLH 494
           LASKGVEFEREILEAE S INDKV+QLQEKARKLEADIEMTRKEIE+PTEVEVELKRRLH
Sbjct: 457 LASKGVEFEREILEAEHSFINDKVAQLQEKARKLEADIEMTRKEIEEPTEVEVELKRRLH 516

Query: 495 QMTDHLIQKQAKVESLSSEKASLQFRIEAVSRLLDENMSASGSTAMNPASSSSDVESGIW 554
           QMTDHLIQKQAKVESLSSEKASL FRIEAVSRLLDENMS SGSTAMNPASSSSD+ESG+W
Sbjct: 517 QMTDHLIQKQAKVESLSSEKASLIFRIEAVSRLLDENMSVSGSTAMNPASSSSDLESGLW 576

Query: 555 ELSNSKLKPMLKARIHSGKRQLGYLLQQLDYIFVAGAVFLKRNPTAKLWAMIYLVCLHLW 614
           ELSNSK KPMLKARIHSGK+QLG LLQQ+DYIFVAGAVFLKRN TAKLWA+IYLVCLHLW
Sbjct: 577 ELSNSKFKPMLKARIHSGKKQLGSLLQQIDYIFVAGAVFLKRNSTAKLWALIYLVCLHLW 636

Query: 615 VIYILTSHSGPSNEGRSGAVISLENINNTG 644
           VIYIL SHS PS+EGRSGAVISLENINNTG
Sbjct: 637 VIYILMSHSSPSDEGRSGAVISLENINNTG 666



 Score =  159 bits (402), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 132/298 (44%), Positives = 163/298 (54%), Gaps = 59/298 (19%)

Query: 1   MANWISSKLKAAENILHQIDQQAAESLRK-NEKLRSDELGIH-DAPAAKSGSVVSLKNQL 58
           MANWISSKLKAAENILHQIDQQAA+SLRK NE+L+ +E     DAP  K G  V LK+Q 
Sbjct: 1   MANWISSKLKAAENILHQIDQQAADSLRKNNERLQLEEQSSSIDAP-PKPG--VPLKDQF 57

Query: 59  KKKPSENNDYHGKLHSDP----NFTTAPKSS-PTPTLADADWTQLLSSPTHSIASASGGD 113
           KK   + N+ +GKLHSDP      T  PKSS P PT++D DWTQLLSSP       S  +
Sbjct: 58  KK--KKKNNNNGKLHSDPLKTKTTTALPKSSNPPPTISDGDWTQLLSSP-------SASN 108

Query: 114 HGNGARGFNKNGRKHKDLLLSDVKRNHKTGTSGSRSLQRLNSVK---LTRKTSDDG---- 166
                R   +N +K   L +SD+KRNHKT    S SLQRL+S+K      K+SDDG    
Sbjct: 109 SLPAPRILRQNSKKLNSLSVSDIKRNHKT---SSTSLQRLDSLKGDNFIAKSSDDGKEST 165

Query: 167 ---------------------MGFTSERHSTDGKPLVEKNDKANQQHQHTFNYRDI-SPP 204
                                 G  S  ++T  KPL E      + H H  N  D  SPP
Sbjct: 166 SSASTDRQSNLEESETDAKSTRGHLSVSNNTSDKPLAE----TKEDHVHPLNNIDFSSPP 221

Query: 205 ESLQEDNKTL--PMPVSDLDNAKIA--PDVVPGQLRGAMKARHGLNSLSGNSKSDDFK 258
             L+ED   +   +PV+ +D  + A  P  V  QL+  +K R  LNS+SGNS S+D K
Sbjct: 222 LLLEEDINFVAEAIPVTGVDKVREAKFPVDVGCQLKTVIKGRRELNSMSGNSTSNDLK 279


>Medtr8g107060.2 | coiled-coil vesicle tethering protein, putative |
           HC | chr8:45231263-45223617 | 20130731
          Length = 494

 Score =  206 bits (525), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 111/121 (91%)

Query: 315 MVAKLEGEKQSLEKILEERAYQQAQEASQLQNTTMETMEAVELEKQKHNNTRMEVLARLA 374
           MVAKLEGEK+SLEKILEERA QQAQEASQLQ+T METMEAVELEKQKHNNTRME+L RLA
Sbjct: 337 MVAKLEGEKESLEKILEERAKQQAQEASQLQSTMMETMEAVELEKQKHNNTRMEILTRLA 396

Query: 375 KLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEFVHEELRRSMRNPRQTGASRNL 434
           KLET NADLARSL AVQ NLEVEVKQVAELRQK+ SKE VHEELRRS+RNP QTGASRN 
Sbjct: 397 KLETANADLARSLTAVQWNLEVEVKQVAELRQKMASKESVHEELRRSLRNPNQTGASRNQ 456

Query: 435 L 435
           L
Sbjct: 457 L 457



 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/298 (44%), Positives = 165/298 (55%), Gaps = 59/298 (19%)

Query: 1   MANWISSKLKAAENILHQIDQQAAESLRK-NEKLRSDELGIH-DAPAAKSGSVVSLKNQL 58
           MANWISSKLKAAENILHQIDQQAA+SLRK NE+L+ +E     DAP  K G  V LK+Q 
Sbjct: 1   MANWISSKLKAAENILHQIDQQAADSLRKNNERLQLEEQSSSIDAP-PKPG--VPLKDQF 57

Query: 59  KKKPSENNDYHGKLHSDP----NFTTAPKSS-PTPTLADADWTQLLSSPTHSIASASGGD 113
           KK   + N+ +GKLHSDP      T  PKSS P PT++D DWTQLLSSP       S  +
Sbjct: 58  KK--KKKNNNNGKLHSDPLKTKTTTALPKSSNPPPTISDGDWTQLLSSP-------SASN 108

Query: 114 HGNGARGFNKNGRKHKDLLLSDVKRNHKTGTSGSRSLQRLNSVK---LTRKTSDDGMGFT 170
                R   +N +K   L +SD+KRNHKT ++   SLQRL+S+K      K+SDDG   T
Sbjct: 109 SLPAPRILRQNSKKLNSLSVSDIKRNHKTSST---SLQRLDSLKGDNFIAKSSDDGKEST 165

Query: 171 S----ERHS---------------------TDGKPLVEKNDKANQQHQHTFNYRDI-SPP 204
           S    +R S                     T  KPL E      + H H  N  D  SPP
Sbjct: 166 SSASTDRQSNLEESETDAKSTRGHLSVSNNTSDKPLAE----TKEDHVHPLNNIDFSSPP 221

Query: 205 ESLQEDNKTL--PMPVSDLDNAKIA--PDVVPGQLRGAMKARHGLNSLSGNSKSDDFK 258
             L+ED   +   +PV+ +D  + A  P  V  QL+  +K R  LNS+SGNS S+D K
Sbjct: 222 LLLEEDINFVAEAIPVTGVDKVREAKFPVDVGCQLKTVIKGRRELNSMSGNSTSNDLK 279


>Medtr6g088595.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr6:33723205-33733399 | 20130731
          Length = 711

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 136/277 (49%), Gaps = 30/277 (10%)

Query: 362 HNNTRMEVLARLAKLETVNADLARSLAAVQCNLEVEVKQVAELRQKIVSKEF----VHEE 417
           HN T++  + R  +LE    + + +LA +Q   +    +  EL QK+   E     +++E
Sbjct: 415 HNATKLASMEREVELEHRAVESSTALARIQRIADERTAKATELEQKVALLEVECSSLNQE 474

Query: 418 L--------RRSMRNPRQTGASRNLLA-SKGVEFERE-ILEAELSLINDKVSQLQEKARK 467
           L        R   ++P +      + A  + VE  R+   EAE     +K+S L+ + +K
Sbjct: 475 LQDMEARLRREQKKSPEEANQVIQIQAWQEEVERARQGQREAE-----NKLSSLEAELQK 529

Query: 468 LEADIEMTRKEIEQPTEVE-VELKRRLHQMTDHLIQKQAKVESLSSEKASLQFRIEAVSR 526
           L  ++   +++ E  +  E  EL++R  ++TD L  KQ ++E++ SEKA+ +F++E   +
Sbjct: 530 LRVEMAAMKRDAEHYSRQEHTELEKRYRELTDLLYYKQTQLETMVSEKAATEFQLEKEIK 589

Query: 527 LLDENMSASGSTAMNPASSSSDVESGIWELSNS--KLKPM-LKARIHSGKR-QLGYLLQQ 582
            L E      + A    S  S   S  WE       L+P+ L  R  +G   QL   ++ 
Sbjct: 590 RLKE------AQAETERSRVSRRASSSWEDETDIKALEPLPLHHRHLAGASIQLQKAVKL 643

Query: 583 LDYIFVAGAVFLKRNPTAKLWAMIYLVCLHLWVIYIL 619
           LD   V    FL R PTA+++   YLV +HL+++Y+L
Sbjct: 644 LDSGAVRATRFLWRYPTARVFLFFYLVFVHLFLMYLL 680