Miyakogusa Predicted Gene

Lj4g3v3113320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3113320.1 tr|B9GYI8|B9GYI8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_555245 PE=4 SV=1,26.8,9e-18,no
description,NULL; F-box domain,F-box domain, cyclin-like;
seg,NULL,CUFF.52339.1
         (393 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g134390.1 | F-box protein interaction domain protein | HC ...    50   4e-06

>Medtr4g134390.1 | F-box protein interaction domain protein | HC |
           chr4:56277229-56278440 | 20130731
          Length = 403

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 113/296 (38%), Gaps = 64/296 (21%)

Query: 36  KCVSRQWLTLISDQQFRESHRDKHQRYNTSLIFNPKASGRIEIPHILCFTAXXXXXXXXX 95
           KC+SR W  +IS + F      K Q  NT+L+ N      ++  ++ C            
Sbjct: 38  KCISRGWNHIISSRSFI-----KDQLKNTNLVLN---GFIVQDRYMFCKHDVKTISYIPV 89

Query: 96  XRFN-----------LNFLHQYELNVVRSCNGIILCHGLDPF---NYFICNPITREFTSL 141
              N            +FL Q ++ V+ SC GI+ C    P      ++CNP  ++F   
Sbjct: 90  EPKNNAAKLVVHHNVFSFLPQ-DVVVLASCKGIVCCRTCFPSPNPTIYLCNPSNKDFIQF 148

Query: 142 SLPSWFKSKPPRNRTLFLAF----------NPFQIISVAAVNASKLDW--------VFNV 183
           + P      P  + T  +A           + F+++ V  +     D+         F V
Sbjct: 149 NCP------PQCDITDSIALAFDFDFDFDPSKFKLVRVKRIQKYHDDYDVDESFYFTFEV 202

Query: 184 YSFKSRSWIHSQSEILRSTSSELDDVGHGVYCNR------AIHWCNRGYFFIYFHLDTKC 237
           YS ++++W           S+E  D  +G+  N+       +HW   G   I F+++ + 
Sbjct: 203 YSSETKAW---------KKSNETCDCNYGLIKNKGLYIGGVLHWLTEGDQIITFNVEKEL 253

Query: 238 LQNLPIPPAYSEFYDRCLHYFGESGGRLHMMLSPRLGFNFNYDIYELKEDYSEWTW 293
              + +P    EF        GE  GRLH +     G +      +  EDY ++ W
Sbjct: 254 SLMISVPVPACEFRTVPQACIGEYEGRLHYVQVSEQGLHVW--CLDSLEDYFDFKW 307