Miyakogusa Predicted Gene
- Lj4g3v3112970.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3112970.1 Non Characterized Hit- tr|I3T9N3|I3T9N3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.74,0,UBC-like,Ubiquitin-conjugating enzyme/RWD-like; no
description,Ubiquitin-conjugating enzyme/RWD-like,CUFF.52308.1
(159 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g105010.1 | ubiquitin-conjugating enzyme | HC | chr8:44286... 290 3e-79
Medtr8g105010.2 | ubiquitin-conjugating enzyme | HC | chr8:44286... 255 1e-68
Medtr1g058100.1 | ubiquitin-conjugating enzyme | HC | chr1:25571... 229 6e-61
Medtr1g058100.3 | ubiquitin-conjugating enzyme | HC | chr1:25571... 225 1e-59
Medtr1g058100.2 | ubiquitin-conjugating enzyme | HC | chr1:25571... 189 1e-48
Medtr1g058100.4 | ubiquitin-conjugating enzyme | HC | chr1:25571... 167 4e-42
Medtr4g063490.1 | ubiquitin-conjugating enzyme | HC | chr4:23528... 55 3e-08
Medtr2g096690.1 | ubiquitin-conjugating enzyme | HC | chr2:41294... 54 6e-08
Medtr2g096690.2 | ubiquitin-conjugating enzyme | HC | chr2:41294... 53 1e-07
Medtr8g085690.1 | ubiquitin-conjugating enzyme | HC | chr8:35525... 52 3e-07
Medtr4g076200.2 | ubiquitin-conjugating enzyme E2 | HC | chr4:29... 49 3e-06
Medtr4g076200.1 | ubiquitin-conjugating enzyme E2 | HC | chr4:29... 48 3e-06
Medtr2g096690.3 | ubiquitin-conjugating enzyme | HC | chr2:41294... 47 7e-06
Medtr3g098780.4 | ubiquitin-conjugating enzyme E2, putative | HC... 47 7e-06
Medtr3g098780.2 | ubiquitin-conjugating enzyme E2, putative | HC... 47 7e-06
Medtr3g098780.3 | ubiquitin-conjugating enzyme E2, putative | HC... 47 7e-06
Medtr3g098780.5 | ubiquitin-conjugating enzyme E2, putative | HC... 47 7e-06
Medtr3g098780.1 | ubiquitin-conjugating enzyme E2, putative | HC... 47 8e-06
>Medtr8g105010.1 | ubiquitin-conjugating enzyme | HC |
chr8:44286998-44280833 | 20130731
Length = 159
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 135/159 (84%), Positives = 149/159 (93%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
MGSEGS+VVVPR+FR RGEKGIGDGTVSYGMDDADDI+MQSWTGTIIGPPGTVHE
Sbjct: 1 MGSEGSTVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIFMQSWTGTIIGPPGTVHE 60
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLANWQRECTMEDIL 120
GRIYQLKLFCGKDYPDNPPSVRFQTRIN+TCVNQE+G V+P+ FPMLA+W+RE TMEDIL
Sbjct: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNQESGVVEPNLFPMLASWKRESTMEDIL 120
Query: 121 MQLKKEMMSPQNRKLAQPAEGNEDGRIEQKGLVLRCCVM 159
+QLKKEMMSPQNRKL+QP EGNEDGRI+QKGLVLRCC++
Sbjct: 121 LQLKKEMMSPQNRKLSQPPEGNEDGRIDQKGLVLRCCIV 159
>Medtr8g105010.2 | ubiquitin-conjugating enzyme | HC |
chr8:44286969-44280833 | 20130731
Length = 163
Score = 255 bits (651), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 119/140 (85%), Positives = 130/140 (92%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
MGSEGS+VVVPR+FR RGEKGIGDGTVSYGMDDADDI+MQSWTGTIIGPPGTVHE
Sbjct: 1 MGSEGSTVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIFMQSWTGTIIGPPGTVHE 60
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLANWQRECTMEDIL 120
GRIYQLKLFCGKDYPDNPPSVRFQTRIN+TCVNQE+G V+P+ FPMLA+W+RE TMEDIL
Sbjct: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNQESGVVEPNLFPMLASWKRESTMEDIL 120
Query: 121 MQLKKEMMSPQNRKLAQPAE 140
+QLKKEMMSPQNRKL+QP E
Sbjct: 121 LQLKKEMMSPQNRKLSQPPE 140
>Medtr1g058100.1 | ubiquitin-conjugating enzyme | HC |
chr1:25571881-25568545 | 20130731
Length = 146
Score = 229 bits (585), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 107/141 (75%), Positives = 117/141 (82%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
+GS GSSVVVPR+FR RGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP TVHE
Sbjct: 3 LGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLANWQRECTMEDIL 120
GRIYQLKLFC KDYP+ PPSVRF +RIN+TCVN ETG V+P F +LANWQRE +MEDIL
Sbjct: 63 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYSMEDIL 122
Query: 121 MQLKKEMMSPQNRKLAQPAEG 141
QLKKEM +P NRKL QP EG
Sbjct: 123 TQLKKEMAAPHNRKLVQPPEG 143
>Medtr1g058100.3 | ubiquitin-conjugating enzyme | HC |
chr1:25571849-25568947 | 20130731
Length = 148
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/143 (74%), Positives = 118/143 (82%), Gaps = 2/143 (1%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
+GS GSSVVVPR+FR RGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP TVHE
Sbjct: 3 LGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETG--AVDPHSFPMLANWQRECTMED 118
GRIYQLKLFC KDYP+ PPSVRF +RIN+TCVN ETG +V+P F +LANWQRE +MED
Sbjct: 63 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVSVEPKKFGLLANWQREYSMED 122
Query: 119 ILMQLKKEMMSPQNRKLAQPAEG 141
IL QLKKEM +P NRKL QP EG
Sbjct: 123 ILTQLKKEMAAPHNRKLVQPPEG 145
>Medtr1g058100.2 | ubiquitin-conjugating enzyme | HC |
chr1:25571849-25568947 | 20130731
Length = 128
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 102/142 (71%), Gaps = 18/142 (12%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
+GS GSSVVVPR+FR RGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP TVHE
Sbjct: 3 LGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLANWQRECTMEDIL 120
GRIYQLKLFC KDYP+ PPS V+P F +LANWQRE +MEDIL
Sbjct: 63 GRIYQLKLFCDKDYPEKPPS------------------VEPKKFGLLANWQREYSMEDIL 104
Query: 121 MQLKKEMMSPQNRKLAQPAEGN 142
QLKKEM +P NRKL QP EG
Sbjct: 105 TQLKKEMAAPHNRKLVQPPEGT 126
>Medtr1g058100.4 | ubiquitin-conjugating enzyme | HC |
chr1:25571849-25568936 | 20130731
Length = 113
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/99 (78%), Positives = 84/99 (84%)
Query: 1 MGSEGSSVVVPRSFRXXXXXXRGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHE 60
+GS GSSVVVPR+FR RGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP TVHE
Sbjct: 3 LGSAGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62
Query: 61 GRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAV 99
GRIYQLKLFC KDYP+ PPSVRF +RIN+TCVN ETG V
Sbjct: 63 GRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVV 101
>Medtr4g063490.1 | ubiquitin-conjugating enzyme | HC |
chr4:23528203-23525021 | 20130731
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 33 SYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRI---NI 89
S G+ D ++I+ W+ T+IGPP T++EG + + +YP++PP+V+F + I N+
Sbjct: 25 SAGLVDENNIF--EWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTSEIWHPNV 82
Query: 90 -----TCVN-QETGAVDPHSFPMLAN-WQRECTMEDILMQLKKEMMSPQNRKLA--QPAE 140
C++ DP+ + + + W T+E I++ + + SP + A + A+
Sbjct: 83 YTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAK 142
Query: 141 GNEDGRIEQKGLVLRC 156
D R E + V RC
Sbjct: 143 MWRDNRDEFRKKVGRC 158
>Medtr2g096690.1 | ubiquitin-conjugating enzyme | HC |
chr2:41294217-41289404 | 20130731
Length = 166
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 33 SYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRI---NI 89
S G+ D +I+ W+ TIIGPP T++EG + + +YP++PPSV+F + I N+
Sbjct: 25 SAGLVDETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNV 82
Query: 90 -----TCVN-QETGAVDPHSFPMLAN-WQRECTMEDILMQLKKEMMSPQNRKLAQPAEGN 142
C++ DP+ + + + W T+E I++ + + P + A
Sbjct: 83 YPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAK 142
Query: 143 E--DGRIEQKGLVLRC 156
E D R + K V RC
Sbjct: 143 EWRDRRDDFKKKVSRC 158
>Medtr2g096690.2 | ubiquitin-conjugating enzyme | HC |
chr2:41294168-41289530 | 20130731
Length = 165
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 33 SYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRI---NI 89
S G+ D +I+ W+ TIIGPP T++EG + + +YP++PPSV+F + I N+
Sbjct: 25 SAGLVDETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNV 82
Query: 90 -----TCVN-QETGAVDPHSFPMLAN-WQRECTMEDILMQLKKEMMSPQNRKLAQPAEGN 142
C++ DP+ + + + W T+E I++ + + P + A E
Sbjct: 83 YPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPAN-VEAA 141
Query: 143 E--DGRIEQKGLVLRC 156
E D R + K V RC
Sbjct: 142 EWRDRRDDFKKKVSRC 157
>Medtr8g085690.1 | ubiquitin-conjugating enzyme | HC |
chr8:35525046-35520951 | 20130731
Length = 168
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 40 DDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAV 99
D++Y W TIIG PGT ++G I+ L + DYP PP V F+TRI C + G V
Sbjct: 49 DNLY--HWIATIIGTPGTPYQGGIFFLDIIFPTDYPFKPPQVVFRTRI-YHCNVEPDGRV 105
Query: 100 DPHSFPMLAN-WQRECTMEDILMQLKKEMMSPQNRKLAQPA 139
S +L + W T+ +L+ ++ + +P P
Sbjct: 106 ---SMGILKDGWSPALTITKVLLAVRSLLTNPDPYNAVVPV 143
>Medtr4g076200.2 | ubiquitin-conjugating enzyme E2 | HC |
chr4:29176350-29178449 | 20130731
Length = 138
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 24/133 (18%)
Query: 23 GEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVR 82
GE GI + D+I++ W GTI G TV EG Y+L L DYP P V+
Sbjct: 7 GESGIS------AFPEEDNIFL--WKGTITGSKDTVFEGTDYKLSLSFPNDYPFKAPKVK 58
Query: 83 FQTRINITCVNQETGAVDPHSFPML----ANWQRECTMEDILMQLKK-----EMMSPQNR 133
F+T TC + VD H L W + IL+ ++ + SP N
Sbjct: 59 FET----TCFHPN---VDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNP 111
Query: 134 KLAQPAEGNEDGR 146
+ AQ ED R
Sbjct: 112 QAAQLWSNQEDYR 124
>Medtr4g076200.1 | ubiquitin-conjugating enzyme E2 | HC |
chr4:29176213-29178449 | 20130731
Length = 179
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 56/133 (42%), Gaps = 24/133 (18%)
Query: 23 GEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVR 82
GE GI + D+I++ W GTI G TV EG Y+L L DYP P V+
Sbjct: 48 GESGIS------AFPEEDNIFL--WKGTITGSKDTVFEGTDYKLSLSFPNDYPFKAPKVK 99
Query: 83 FQTRINITCVNQETGAVDPHSFPML----ANWQRECTMEDILMQLKK-----EMMSPQNR 133
F+T TC + VD H L W + IL+ ++ + SP N
Sbjct: 100 FET----TCFHPN---VDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNP 152
Query: 134 KLAQPAEGNEDGR 146
+ AQ ED R
Sbjct: 153 QAAQLWSNQEDYR 165
>Medtr2g096690.3 | ubiquitin-conjugating enzyme | HC |
chr2:41294174-41289404 | 20130731
Length = 117
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 33 SYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRI 87
S G+ D +I+ W+ TIIGPP T++EG + + +YP++PPSV+F + I
Sbjct: 25 SAGLVDETNIF--EWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEI 77
>Medtr3g098780.4 | ubiquitin-conjugating enzyme E2, putative | HC |
chr3:45265221-45260360 | 20130731
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 49 GTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLA 108
GTI GP GT ++G ++Q+ + YP PP +RF T++ ++ + GA+ +L
Sbjct: 37 GTIPGPTGTPYDGGVFQIDITLPDGYPFEPPKMRFSTKVWHPNISSQNGAI---CLDILK 93
Query: 109 N-WQRECTMEDILMQLKKEMMSPQ 131
+ W T++ L+ ++ + +PQ
Sbjct: 94 DQWSPALTLKTALLSVQALLSAPQ 117
>Medtr3g098780.2 | ubiquitin-conjugating enzyme E2, putative | HC |
chr3:45265221-45260360 | 20130731
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 49 GTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLA 108
GTI GP GT ++G ++Q+ + YP PP +RF T++ ++ + GA+ +L
Sbjct: 37 GTIPGPTGTPYDGGVFQIDITLPDGYPFEPPKMRFSTKVWHPNISSQNGAI---CLDILK 93
Query: 109 N-WQRECTMEDILMQLKKEMMSPQ 131
+ W T++ L+ ++ + +PQ
Sbjct: 94 DQWSPALTLKTALLSVQALLSAPQ 117
>Medtr3g098780.3 | ubiquitin-conjugating enzyme E2, putative | HC |
chr3:45265214-45260360 | 20130731
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 49 GTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLA 108
GTI GP GT ++G ++Q+ + YP PP +RF T++ ++ + GA+ +L
Sbjct: 37 GTIPGPTGTPYDGGVFQIDITLPDGYPFEPPKMRFSTKVWHPNISSQNGAI---CLDILK 93
Query: 109 N-WQRECTMEDILMQLKKEMMSPQ 131
+ W T++ L+ ++ + +PQ
Sbjct: 94 DQWSPALTLKTALLSVQALLSAPQ 117
>Medtr3g098780.5 | ubiquitin-conjugating enzyme E2, putative | HC |
chr3:45265221-45260360 | 20130731
Length = 192
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 49 GTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLA 108
GTI GP GT ++G ++Q+ + YP PP +RF T++ ++ + GA+ +L
Sbjct: 37 GTIPGPTGTPYDGGVFQIDITLPDGYPFEPPKMRFSTKVWHPNISSQNGAI---CLDILK 93
Query: 109 N-WQRECTMEDILMQLKKEMMSPQ 131
+ W T++ L+ ++ + +PQ
Sbjct: 94 DQWSPALTLKTALLSVQALLSAPQ 117
>Medtr3g098780.1 | ubiquitin-conjugating enzyme E2, putative | HC |
chr3:45265547-45260411 | 20130731
Length = 216
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 49 GTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLA 108
GTI GP GT ++G ++Q+ + YP PP +RF T++ ++ + GA+ +L
Sbjct: 61 GTIPGPTGTPYDGGVFQIDITLPDGYPFEPPKMRFSTKVWHPNISSQNGAI---CLDILK 117
Query: 109 N-WQRECTMEDILMQLKKEMMSPQ 131
+ W T++ L+ ++ + +PQ
Sbjct: 118 DQWSPALTLKTALLSVQALLSAPQ 141