Miyakogusa Predicted Gene
- Lj4g3v3112900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3112900.1 tr|B3H4G3|B3H4G3_ARATH Protein TIFY 6A
OS=Arabidopsis thaliana GN=JAZ4 PE=4 SV=1,34.58,9e-19,TIFY,Tify; no
description,Tify; seg,NULL; tify,Tify; CCT_2,CO/COL/TOC1, conserved
site,CUFF.52351.1
(328 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g031930.1 | jasmonate zim-domain protein | HC | chr1:11247... 283 2e-76
Medtr1g031930.2 | jasmonate zim-domain protein | HC | chr1:11247... 217 1e-56
Medtr2g029260.1 | zim motif protein | HC | chr2:10915506-1091444... 92 9e-19
Medtr6g069870.1 | jasmonate zim-domain protein | HC | chr6:25209... 86 7e-17
Medtr6g069870.4 | jasmonate zim-domain protein | HC | chr6:25209... 86 7e-17
Medtr6g069870.3 | jasmonate zim-domain protein | HC | chr6:25209... 85 8e-17
Medtr6g069870.2 | jasmonate zim-domain protein | HC | chr6:25209... 85 1e-16
>Medtr1g031930.1 | jasmonate zim-domain protein | HC |
chr1:11247549-11243460 | 20130731
Length = 361
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/341 (50%), Positives = 207/341 (60%), Gaps = 23/341 (6%)
Query: 1 MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDE 60
MERDF+ L SKE EI N+G +SGF+ S +WPF NKV+ ++ FKVS+D+
Sbjct: 1 MERDFLSLCSKES----SPEINNEGSKNSGFSNVSAVKWPFLNKVAVHSYLTPFKVSEDD 56
Query: 61 RTKRMVSE-PQKSLNLNEQGGIHFSLAPHPVQH---------DGKMFSVSNQAISAPLGN 110
+ K + S Q S + Q GIHFS+ +PVQH D KMF +SNQA S +
Sbjct: 57 KAKMISSGFIQNSFKHDGQVGIHFSVNQYPVQHNVNFMNRHHDVKMFPISNQANSLSAVH 116
Query: 111 PFQKNHFAAAGQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSESCLKTSAPSAPLT 170
P KNH A GQN+NGAN K LLGG PVTAPHS LP +G VAG+ E C K SAP+ LT
Sbjct: 117 PLLKNHLATFGQNINGANAKQSLLGGLPVTAPHSVLPIVGTVAGLVEPCEKPSAPAPQLT 176
Query: 171 IFYAGTVNVFDDISAEKAQAIMLLAAGNVLFGASSTAQQKVQAPSSKLAGGD----VCPP 226
+FY GTVN+F+DI+ EKAQAIMLL AG+ L AS+ AQ +VQA SSK A GD + PP
Sbjct: 177 MFYGGTVNIFNDITPEKAQAIMLL-AGSGLSAASNRAQPEVQASSSKFASGDDGLPISPP 235
Query: 227 ANTXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFLAAKTTGVPTAPVS---IVEPRKAVTA 283
DEF+AAKT+ PT S +V P K V A
Sbjct: 236 VYIPPCSGISSPLSVSSHTGPQPGSGSSSSDEFMAAKTSRGPTPTTSACKVVTP-KVVNA 294
Query: 284 ATMLTSAVPQARKASLARFLEKRKERAMNAAPYNNLKKSEE 324
TM+ SA+PQARKASLARFLEKRKER M+ APYN KKSE+
Sbjct: 295 TTMIPSAIPQARKASLARFLEKRKERVMSTAPYNLNKKSED 335
>Medtr1g031930.2 | jasmonate zim-domain protein | HC |
chr1:11247525-11243460 | 20130731
Length = 300
Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/331 (43%), Positives = 173/331 (52%), Gaps = 64/331 (19%)
Query: 1 MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDE 60
MERDF+ L SKE EI N+G +SGF+ S +WPF NKV+
Sbjct: 1 MERDFLSLCSKES----SPEINNEGSKNSGFSNVSAVKWPFLNKVA-------------- 42
Query: 61 RTKRMVSEPQKSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAA 120
+H L P V D K +S+ I
Sbjct: 43 --------------------VHSYLTPFKVSEDDKAKMISSGFI---------------- 66
Query: 121 GQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSESCLKTSAPSAPLTIFYAGTVNVF 180
QN+NGAN K LLGG PVTAPHS LP +G VAG+ E C K SAP+ LT+FY GTVN+F
Sbjct: 67 -QNINGANAKQSLLGGLPVTAPHSVLPIVGTVAGLVEPCEKPSAPAPQLTMFYGGTVNIF 125
Query: 181 DDISAEKAQAIMLLAAGNVLFGASSTAQQKVQAPSSKLAGGD----VCPPANTXXXXXXX 236
+DI+ EKAQAIMLL AG+ L AS+ AQ +VQA SSK A GD + PP
Sbjct: 126 NDITPEKAQAIMLL-AGSGLSAASNRAQPEVQASSSKFASGDDGLPISPPVYIPPCSGIS 184
Query: 237 XXXXXXXXXXXXXXXXXXXXDEFLAAKTTGVPTAPVS---IVEPRKAVTAATMLTSAVPQ 293
DEF+AAKT+ PT S +V P K V A TM+ SA+PQ
Sbjct: 185 SPLSVSSHTGPQPGSGSSSSDEFMAAKTSRGPTPTTSACKVVTP-KVVNATTMIPSAIPQ 243
Query: 294 ARKASLARFLEKRKERAMNAAPYNNLKKSEE 324
ARKASLARFLEKRKER M+ APYN KKSE+
Sbjct: 244 ARKASLARFLEKRKERVMSTAPYNLNKKSED 274
>Medtr2g029260.1 | zim motif protein | HC | chr2:10915506-10914443 |
20130731
Length = 118
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 160 LKTSAPSAPLTIFYAGTVNVFDDISAEKAQAIMLLAAGNVLFGASSTAQQKVQAPSSKLA 219
+K S PS+ LTIFYAGTVNVFDDI A+KAQAI LL+A N + AS+TA +KVQAP
Sbjct: 4 VKPSLPSSQLTIFYAGTVNVFDDIPADKAQAI-LLSARNGVSVASNTAHRKVQAPGD--- 59
Query: 220 GGDVCPPANTXXXXXXXXXXXXXXXXXXXXXXXXXXXDEFLAAKTTGVPTAPVSIVEP 277
G V P+N DEFLA K TGVPTAPVS VEP
Sbjct: 60 GVPVSQPSNAPHSSSHPSPVSISSHTGAQSGSGSTSTDEFLAVKATGVPTAPVSNVEP 117
>Medtr6g069870.1 | jasmonate zim-domain protein | HC |
chr6:25209215-25205882 | 20130731
Length = 395
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 38 QWPFTNKVSAFPHVMSFKV-SQDERTKRMVSEP--------------------------Q 70
QW F+NKVS P MSFK + ++R++ V +P Q
Sbjct: 2 QWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSNQKSFLGVTQ 61
Query: 71 KSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVK 130
++L + + G H + +P+Q + +A + + N Q NH G NM +
Sbjct: 62 ENLAIKQVGNKH-GITIYPIQSSDAQSVCNQEARTISVSN--QSNH-VITGINMVNSVTN 117
Query: 131 LPLLGGKPVTAPHSSLPTIGAVAG----MSESCLKTSAPS-APLTIFYAGTVNVFDDISA 185
G K P S LP+ G + G S +C K++ + A LTIFY GTV V+DDIS
Sbjct: 118 SQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISP 177
Query: 186 EKAQAIMLLAAGNVLFGASSTAQQKVQAPSSK 217
EKA+AIMLLA G + QQ++ PS K
Sbjct: 178 EKAKAIMLLA------GNGTKMQQEISIPSKK 203
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Query: 265 TGVPTAPVSIVEPRKAVTAATMLTSAVPQARKASLARFLEKRKERAMNAAPYNNLKKSEE 324
T V P ++++P +PQARKASL RFLEKRKERAM+ +PY K S E
Sbjct: 311 TSVGLTPTNVIQPV-----------GLPQARKASLTRFLEKRKERAMSTSPYYMSKISPE 359
Query: 325 CA 326
C+
Sbjct: 360 CS 361
>Medtr6g069870.4 | jasmonate zim-domain protein | HC |
chr6:25209508-25205862 | 20130731
Length = 395
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 38 QWPFTNKVSAFPHVMSFKV-SQDERTKRMVSEP--------------------------Q 70
QW F+NKVS P MSFK + ++R++ V +P Q
Sbjct: 2 QWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSNQKSFLGVTQ 61
Query: 71 KSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVK 130
++L + + G H + +P+Q + +A + + N Q NH G NM +
Sbjct: 62 ENLAIKQVGNKH-GITIYPIQSSDAQSVCNQEARTISVSN--QSNH-VITGINMVNSVTN 117
Query: 131 LPLLGGKPVTAPHSSLPTIGAVAG----MSESCLKTSAPS-APLTIFYAGTVNVFDDISA 185
G K P S LP+ G + G S +C K++ + A LTIFY GTV V+DDIS
Sbjct: 118 SQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISP 177
Query: 186 EKAQAIMLLAAGNVLFGASSTAQQKVQAPSSK 217
EKA+AIMLLA G + QQ++ PS K
Sbjct: 178 EKAKAIMLLA------GNGTKMQQEISIPSKK 203
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Query: 265 TGVPTAPVSIVEPRKAVTAATMLTSAVPQARKASLARFLEKRKERAMNAAPYNNLKKSEE 324
T V P ++++P +PQARKASL RFLEKRKERAM+ +PY K S E
Sbjct: 311 TSVGLTPTNVIQPV-----------GLPQARKASLTRFLEKRKERAMSTSPYYMSKISPE 359
Query: 325 CA 326
C+
Sbjct: 360 CS 361
>Medtr6g069870.3 | jasmonate zim-domain protein | HC |
chr6:25209284-25205882 | 20130731
Length = 344
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 38 QWPFTNKVSAFPHVMSFKV-SQDERTKRMVSEP--------------------------Q 70
QW F+NKVS P MSFK + ++R++ V +P Q
Sbjct: 2 QWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSNQKSFLGVTQ 61
Query: 71 KSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVK 130
++L + + G H + +P+Q + +A + + N Q NH G NM +
Sbjct: 62 ENLAIKQVGNKH-GITIYPIQSSDAQSVCNQEARTISVSN--QSNH-VITGINMVNSVTN 117
Query: 131 LPLLGGKPVTAPHSSLPTIGAVAG----MSESCLKTSAPS-APLTIFYAGTVNVFDDISA 185
G K P S LP+ G + G S +C K++ + A LTIFY GTV V+DDIS
Sbjct: 118 SQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISP 177
Query: 186 EKAQAIMLLAAGNVLFGASSTAQQKVQAPSSK 217
EKA+AIMLLA G + QQ++ PS K
Sbjct: 178 EKAKAIMLLA------GNGTKMQQEISIPSKK 203
>Medtr6g069870.2 | jasmonate zim-domain protein | HC |
chr6:25209601-25205833 | 20130731
Length = 334
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 42/212 (19%)
Query: 38 QWPFTNKVSAFPHVMSFKV-SQDERTKRMVSEP--------------------------Q 70
QW F+NKVS P MSFK + ++R++ V +P Q
Sbjct: 2 QWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSNQKSFLGVTQ 61
Query: 71 KSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVK 130
++L + + G H + +P+Q + +A + + N Q NH G NM +
Sbjct: 62 ENLAIKQVGNKH-GITIYPIQSSDAQSVCNQEARTISVSN--QSNH-VITGINMVNSVTN 117
Query: 131 LPLLGGKPVTAPHSSLPTIGAVAG----MSESCLKTSAPS-APLTIFYAGTVNVFDDISA 185
G K P S LP+ G + G S +C K++ + A LTIFY GTV V+DDIS
Sbjct: 118 SQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISP 177
Query: 186 EKAQAIMLLAAGNVLFGASSTAQQKVQAPSSK 217
EKA+AIMLLA G + QQ++ PS K
Sbjct: 178 EKAKAIMLLA------GNGTKMQQEISIPSKK 203