Miyakogusa Predicted Gene

Lj4g3v3112880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3112880.1 tr|B9HJE6|B9HJE6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766170 PE=4
SV=1,45.95,1e-18,F-box,F-box domain, cyclin-like; no description,NULL;
FBOX,F-box domain, cyclin-like; seg,NULL; PUTA,CUFF.52303.1
         (322 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g104920.1 | F-box SKIP28-like protein | HC | chr8:44233342...   438   e-123
Medtr8g080000.1 | F-box SKIP28-like protein | HC | chr8:34350638...   132   3e-31

>Medtr8g104920.1 | F-box SKIP28-like protein | HC |
           chr8:44233342-44235029 | 20130731
          Length = 320

 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 214/323 (66%), Positives = 248/323 (76%), Gaps = 4/323 (1%)

Query: 1   MEESSKAFSS-LSITVEKGQAQTEQEPPHEALFLVLTYLPVYQVLAMSQVCKALRDAVNN 59
           MEES KA SS +S TVE+   + ++ PPHEA+FLV+ YL VY+VL MS+VC +LR AVNN
Sbjct: 1   MEESCKASSSEMSTTVEE---EEQEGPPHEAMFLVIAYLRVYEVLTMSRVCTSLRYAVNN 57

Query: 60  DVLPWLNVIVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHITDKGLQRVVEQNPLI 119
           DVL WL +IVE PL+SRLSD+ L+KITSKANGRL+TLALMNC H+ D GLQRVVEQNP I
Sbjct: 58  DVLLWLKIIVETPLNSRLSDDTLLKITSKANGRLQTLALMNCIHVADHGLQRVVEQNPFI 117

Query: 120 NKLHIPACTGITAEGVTRAVQTLCQRSNCLSTLRINGIYNLQKEHLDMLAMNLRKNVPLE 179
            +LHIPACTGIT EGV  AV+TLCQR+NCL+TL +NGIYNLQ +HLD+L  NLRKN+PLE
Sbjct: 118 EELHIPACTGITPEGVLTAVKTLCQRANCLTTLSLNGIYNLQNDHLDVLTSNLRKNLPLE 177

Query: 180 EQQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVYDCPKVECMKREKPQVQC 239
           ++  Q+P YYHKRGS + F   ENQRIIDLE CPKCFEV MVYDCPKV+C ++E  Q QC
Sbjct: 178 DELTQQPIYYHKRGSVSAFKHNENQRIIDLEKCPKCFEVRMVYDCPKVDCNRKELCQAQC 237

Query: 240 RGCKFCIPRXXXXXXXXXXXXXXXXXXXXXXXXXXWLQLPKCNFCNKPYCKQHENWWCSS 299
           RGC FCIPR                          WLQLPKCNFCNKPYCKQH NWWC+S
Sbjct: 238 RGCIFCIPRCENCGGCVGSEELEDVACGDFLCLECWLQLPKCNFCNKPYCKQHTNWWCTS 297

Query: 300 LDPIFLCRVCDEHSHGYTYTDVL 322
            +  FLCRVCDE+SHGYTYTDVL
Sbjct: 298 SESSFLCRVCDENSHGYTYTDVL 320


>Medtr8g080000.1 | F-box SKIP28-like protein | HC |
           chr8:34350638-34354636 | 20130731
          Length = 575

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 134/253 (52%), Gaps = 40/253 (15%)

Query: 28  HEALFLVLTYLPVYQVLAMSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKITS 87
           H  +   L YL +  +L + +VCK+L   V +  + W ++ +++PL+ R++D+IL+++T+
Sbjct: 279 HSVINSSLRYLGLSDLLVLERVCKSLHSTVRDPQM-WTSIHIDQPLNERITDDILLELTN 337

Query: 88  KANGRLKTLALMNCTHITDKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSN 147
           +A G L+ L+L+ CT ITD GL+RV+E NP ++KL +P CT ++ EG+   ++      N
Sbjct: 338 RAQGLLQCLSLVECTRITDDGLRRVLEVNPKLSKLSVPGCTRLSIEGIVGMLKAY----N 393

Query: 148 CLST-----LRINGIYNLQKEHLDMLAM-------------------NLRKNVPLEE--- 180
            + T     L I G+Y + ++H + + +                   N R + P E    
Sbjct: 394 SMGTQKVKHLHIGGLYGVTQKHFEQIKLLLGTDKKRLENALDSQPHENARDSQPQENAPD 453

Query: 181 ----QQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVYDCPKVECMKREKPQ 236
               +   KP++Y +   + ++   ++ R +D+E CP+C  + +VYDCP   C       
Sbjct: 454 SQLLEHSHKPHFYCR---WNLYLPCDDDRDLDIEVCPRCQNLRLVYDCPAEGCQGVGGHA 510

Query: 237 VQ-CRGCKFCIPR 248
            Q CR C  CIPR
Sbjct: 511 TQLCRACTLCIPR 523