Miyakogusa Predicted Gene

Lj4g3v3099310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3099310.1 Non Characterized Hit- tr|I0Z833|I0Z833_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,57.35,0.00000000000004,seg,NULL; CLEAVAGE STIMULATION FACTOR
64,NULL; RNA-BINDING PROTEIN,NULL; CSTF2_hinge,Cleavage
stimul,CUFF.52271.1
         (400 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein ...   371   e-103

>Medtr8g104260.1 | hydroxyproline-rich glycoprotein-like protein |
           HC | chr8:43905814-43900142 | 20130731
          Length = 395

 Score =  371 bits (952), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/402 (57%), Positives = 242/402 (60%), Gaps = 9/402 (2%)

Query: 1   MAGKQVSXXXXXXXXXLTANLAGMSKNQLYDIMSQMKXXXXXXXXXXXXXXXXXPMLTKA 60
           MAGKQVS         L+ANLAGMSKNQLYDIMSQMK                 PMLTKA
Sbjct: 1   MAGKQVSGEG------LSANLAGMSKNQLYDIMSQMKNLIEQNQQQAKQILIQNPMLTKA 54

Query: 61  LFQAQIMLGXXXXXXXXXXXXXXX-XXXXXSVQSAXXXXXXXXXXXXGQGGAQDQAGVSQ 119
           LFQAQIMLG                     SVQ               QGG QDQAGVSQ
Sbjct: 55  LFQAQIMLGMVQSQQAVPKVQPIAPQNNQQSVQPTQRPSVQPAPILPAQGGIQDQAGVSQ 114

Query: 120 TQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXXXXXXX 179
           TQIP RKHQNQPSVPVSYAA PA SHQS P A HSLQMPQQPKGH               
Sbjct: 115 TQIPPRKHQNQPSVPVSYAAVPATSHQSQPTAAHSLQMPQQPKGHLTPQVAPASVPQSSQ 174

Query: 180 XXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSASSFHP 239
             +I              TQM TASSQ  QPLQ PGF HM             S  +FHP
Sbjct: 175 LPHIPPPSVHSSSQPLHPTQMPTASSQAHQPLQTPGFSHMPLQPPLPPQPRPPSVQTFHP 234

Query: 240 QYPPQMGSNLGFQHAG-ASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXXXYPV 298
           QYPP +G+NLGFQHAG ASHNL   MFH GAKPP SVGS F  G             Y V
Sbjct: 235 QYPPPIGANLGFQHAGGASHNLPPPMFHAGAKPP-SVGSTFPPGQALLPSQQSSQSSYQV 293

Query: 299 GNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQPLRPP 358
           GN+PFG DF +Q GNAMQ++R S    G SENLAQ SGP GP S+VSGQ+GAANQP RPP
Sbjct: 294 GNIPFGSDFSSQAGNAMQIERGSSWMPGPSENLAQHSGPQGPSSMVSGQIGAANQPPRPP 353

Query: 359 GLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 400
            LTPDMEKALLQQVMSLTPEQIN LPPEQRNQVLQLQ MLR+
Sbjct: 354 ALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQLMLRK 395