Miyakogusa Predicted Gene

Lj4g3v3098160.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3098160.2 tr|G7L912|G7L912_MEDTR Protein CASP OS=Medicago
truncatula GN=MTR_8g103950 PE=4 SV=1,89.46,0,coiled-coil,NULL;
seg,NULL; CASP_C,CASP, C-terminal; CASP,NULL; CCAAT DISPLACEMENT
PROTEIN-RELATED,N,CUFF.52299.2
         (330 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103950.1 | CASP carboxy-terminal protein | HC | chr8:4376...   582   e-166
Medtr8g103950.2 | CASP carboxy-terminal protein | HC | chr8:4376...   360   e-100

>Medtr8g103950.1 | CASP carboxy-terminal protein | HC |
           chr8:43763207-43753805 | 20130731
          Length = 683

 Score =  582 bits (1499), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 287/332 (86%), Positives = 297/332 (89%), Gaps = 3/332 (0%)

Query: 1   MRKELHARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 60
           M+KEL  RPTEK+VDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM
Sbjct: 351 MKKELQTRPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 410

Query: 61  EHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQKLIQKLEDDILKGYSSNSKDHKG- 119
           EHELTQLKVKLSEKTSSLE AEQK  EL+ KVNEQQKLIQKLEDDI KGY+S+SKDHKG 
Sbjct: 411 EHELTQLKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGT 470

Query: 120 FPDDWDLSEAGRSEVSE--NMDQRHALDQDQSSMLKVICNQRDXXXXXXXXXXXXXXQLK 177
           F DDWDLSEA RSEVSE  NMDQRHALDQDQSSMLKVIC+QRD              QLK
Sbjct: 471 FLDDWDLSEANRSEVSEHQNMDQRHALDQDQSSMLKVICSQRDRFRTRLRETEEEIRQLK 530

Query: 178 EKIRVLTGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKKYAEDLESGFTSDVESKYK 237
           EKI VLT ELEKTKADNVKLYGKIRYVQDYN  KVVSRGSKKYAEDLESGFTSDVESKYK
Sbjct: 531 EKIGVLTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKKYAEDLESGFTSDVESKYK 590

Query: 238 KIYEDDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHMLV 297
           KIYE+DINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLH+LV
Sbjct: 591 KIYEEDINPFAAFSKKERDQRYKELGFRDRITLSSGRFLLGNKYARTFAFFYTIGLHVLV 650

Query: 298 FTCLYRMSALSYLSHGPEEPLIGARKVDLPRG 329
           FTCLYRMSALSYLSHG +E L G R +DLPRG
Sbjct: 651 FTCLYRMSALSYLSHGSDETLAGERTIDLPRG 682


>Medtr8g103950.2 | CASP carboxy-terminal protein | HC |
           chr8:43763207-43755474 | 20130731
          Length = 574

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/222 (83%), Positives = 192/222 (86%), Gaps = 3/222 (1%)

Query: 1   MRKELHARPTEKMVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 60
           M+KEL  RPTEK+VDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM
Sbjct: 351 MKKELQTRPTEKIVDDLRKKVKILQAVGYNSIEAEDWEVATSGEEMSKMESLLLDKNRKM 410

Query: 61  EHELTQLKVKLSEKTSSLEIAEQKAVELTTKVNEQQKLIQKLEDDILKGYSSNSKDHKG- 119
           EHELTQLKVKLSEKTSSLE AEQK  EL+ KVNEQQKLIQKLEDDI KGY+S+SKDHKG 
Sbjct: 411 EHELTQLKVKLSEKTSSLETAEQKVAELSAKVNEQQKLIQKLEDDISKGYNSSSKDHKGT 470

Query: 120 FPDDWDLSEAGRSEVSE--NMDQRHALDQDQSSMLKVICNQRDXXXXXXXXXXXXXXQLK 177
           F DDWDLSEA RSEVSE  NMDQRHALDQDQSSMLKVIC+QRD              QLK
Sbjct: 471 FLDDWDLSEANRSEVSEHQNMDQRHALDQDQSSMLKVICSQRDRFRTRLRETEEEIRQLK 530

Query: 178 EKIRVLTGELEKTKADNVKLYGKIRYVQDYNTAKVVSRGSKK 219
           EKI VLT ELEKTKADNVKLYGKIRYVQDYN  KVVSRGSKK
Sbjct: 531 EKIGVLTAELEKTKADNVKLYGKIRYVQDYNVEKVVSRGSKK 572