Miyakogusa Predicted Gene

Lj4g3v3098140.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3098140.1 tr|G7L906|G7L906_MEDTR Peptidyl-tRNA hydrolase
OS=Medicago truncatula GN=MTR_8g103890 PE=3 SV=1,78.43,0,seg,NULL;
Peptidyl-tRNA hydrolase-like,Peptidyl-tRNA hydrolase;
PEPT_TRNA_HYDROL_1,Peptidyl-tRNA
hyd,NODE_4872_length_1362_cov_54.908222.path2.1
         (255 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103890.1 | peptidyl-tRNA hydrolase family protein | HC | ...   370   e-102
Medtr8g103890.2 | peptidyl-tRNA hydrolase family protein | HC | ...   261   3e-70
Medtr8g085910.1 | peptidyl-tRNA hydrolase family protein | HC | ...   245   3e-65
Medtr8g095500.1 | group IIB intron splicing facilitator CRS2 | H...   234   7e-62
Medtr7g082240.1 | group IIB intron splicing facilitator CRS2 | H...   233   9e-62

>Medtr8g103890.1 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:43731565-43727004 | 20130731
          Length = 258

 Score =  370 bits (949), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/255 (74%), Positives = 203/255 (79%), Gaps = 7/255 (2%)

Query: 1   MNVATCSVSSFNFPRWRRFXXXXXXXXXXXXXXXXXXXPQNXXXXXXXXXXXXXQPKKKE 60
           MNV  CS+S F FP  R F                     N             +PK+ E
Sbjct: 11  MNVGACSMSRFQFP-IRHFTKPLISCNMSLLSV------PNSSASSISTTIDSTKPKQNE 63

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPGKK+  TRHNVGFEMVD IAEAEGIS++SVSFKALFGKG IGDVPVILAK
Sbjct: 64  PWLIVGLGNPGKKFNGTRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGYIGDVPVILAK 123

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQT+MNLSGESVGAIVSYYKIP+KQVLVIFDD+DLPFAKLRLLPKGGHGGHNGMKSVINH
Sbjct: 124 PQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINH 183

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
            KGN GFPRLRIGIGRPPGKMDPVAFVLR FTKQE+EEL+FTLQ GLEAVRI+LL+GFDK
Sbjct: 184 LKGNSGFPRLRIGIGRPPGKMDPVAFVLRPFTKQEKEELNFTLQDGLEAVRIILLDGFDK 243

Query: 241 SATFVNSSKKMEQIG 255
            ATFVNS+KKMEQ G
Sbjct: 244 GATFVNSAKKMEQTG 258


>Medtr8g103890.2 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:43731554-43728020 | 20130731
          Length = 202

 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 145/193 (75%), Gaps = 7/193 (3%)

Query: 1   MNVATCSVSSFNFPRWRRFXXXXXXXXXXXXXXXXXXXPQNXXXXXXXXXXXXXQPKKKE 60
           MNV  CS+S F FP  R F                     N             +PK+ E
Sbjct: 11  MNVGACSMSRFQFP-IRHFTKPLISCNMSLLSV------PNSSASSISTTIDSTKPKQNE 63

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWLIVGLGNPGKK+  TRHNVGFEMVD IAEAEGIS++SVSFKALFGKG IGDVPVILAK
Sbjct: 64  PWLIVGLGNPGKKFNGTRHNVGFEMVDAIAEAEGISMSSVSFKALFGKGYIGDVPVILAK 123

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQT+MNLSGESVGAIVSYYKIP+KQVLVIFDD+DLPFAKLRLLPKGGHGGHNGMKSVINH
Sbjct: 124 PQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINH 183

Query: 181 FKGNLGFPRLRIG 193
            KGN GFPRLRIG
Sbjct: 184 LKGNSGFPRLRIG 196


>Medtr8g085910.1 | peptidyl-tRNA hydrolase family protein | HC |
           chr8:35644897-35638468 | 20130731
          Length = 218

 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/195 (58%), Positives = 146/195 (74%)

Query: 60  EPWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILA 119
            PWL VGLGNPG KY  TRHNVGFEM+D  AE++GI++++V  KA+FGKG +GDVPV LA
Sbjct: 16  RPWLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGIAMDTVHCKAIFGKGFVGDVPVFLA 75

Query: 120 KPQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVIN 179
           KPQTYMNLSGES G + +YYK+P+ QVLV  DDM+LP   LRL  KGGHG H G+KSVI 
Sbjct: 76  KPQTYMNLSGESAGPLAAYYKLPLNQVLVFHDDMNLPCGVLRLNDKGGHGSHKGLKSVIY 135

Query: 180 HFKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFD 239
           +F+ N  FPRLRIGIG+PPG+MDP AF+L+ F    R+ +D  LQ G++A+++LL  G +
Sbjct: 136 NFRDNSEFPRLRIGIGKPPGQMDPKAFLLQKFNVTARQRIDEALQEGVDALKLLLFIGLE 195

Query: 240 KSATFVNSSKKMEQI 254
            SA   N  +K + +
Sbjct: 196 VSAKRFNKEQKYKHL 210


>Medtr8g095500.1 | group IIB intron splicing facilitator CRS2 | HC |
           chr8:39974720-39971088 | 20130731
          Length = 243

 Score =  234 bits (597), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 147/192 (76%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWL+VGLGNPG KY +TRHNVGFE++D++++++GI +N++  KAL G G IG+VPV+LAK
Sbjct: 48  PWLVVGLGNPGNKYHATRHNVGFEIIDSLSQSQGILMNTIQSKALIGIGSIGEVPVLLAK 107

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQTYMN SGESVG + +YY++P++ +LV++D+  LP   L+L PKGGHG HNG+K+VI H
Sbjct: 108 PQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSLPSGVLKLQPKGGHGHHNGLKNVIGH 167

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G+  FPRL IGIG PPG MD  AF+L+ F+  ER+++D +L+ G++AVR L+L GF+ 
Sbjct: 168 LDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVRTLVLNGFNH 227

Query: 241 SATFVNSSKKME 252
                N  +K +
Sbjct: 228 HVNRFNLGQKYK 239


>Medtr7g082240.1 | group IIB intron splicing facilitator CRS2 | HC |
           chr7:31516457-31513834 | 20130731
          Length = 251

 Score =  233 bits (595), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 104/192 (54%), Positives = 146/192 (76%)

Query: 61  PWLIVGLGNPGKKYASTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGVIGDVPVILAK 120
           PWL+VGLGNPG KY  TRHNVGFE++D+++++EGI +N++  KAL G G IG+VPV+LAK
Sbjct: 56  PWLVVGLGNPGNKYHGTRHNVGFEIIDSLSQSEGILMNTIQSKALIGIGSIGEVPVLLAK 115

Query: 121 PQTYMNLSGESVGAIVSYYKIPVKQVLVIFDDMDLPFAKLRLLPKGGHGGHNGMKSVINH 180
           PQTYMN SGESVG + +YY++P++ +LV++D+  LP   L+L PKGGHG HNG+K+VI H
Sbjct: 116 PQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSLPNGVLKLQPKGGHGHHNGLKNVIGH 175

Query: 181 FKGNLGFPRLRIGIGRPPGKMDPVAFVLRSFTKQEREELDFTLQHGLEAVRILLLEGFDK 240
             G+  FPRL IGIG PPG MD  AF+L+ F+  ER+++D +L+ G++AV+ L+L GF+ 
Sbjct: 176 LDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNH 235

Query: 241 SATFVNSSKKME 252
                N  +K +
Sbjct: 236 HVNRFNLGQKYK 247