Miyakogusa Predicted Gene

Lj4g3v3081720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3081720.1 Non Characterized Hit- tr|I1L4H8|I1L4H8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,45.45,9e-17,seg,NULL,gene.g57988.t1.1
         (282 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g086505.1 | transmembrane protein, putative | HC | chr6:32...   112   5e-25

>Medtr6g086505.1 | transmembrane protein, putative | HC |
           chr6:32554718-32553664 | 20130731
          Length = 285

 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 110/193 (56%), Gaps = 37/193 (19%)

Query: 89  IYAQGVLQAPRSMLLPTVSRKEDIAGPKKQLSEFLHQVVEIQTQESNASPCQVGVLSASS 148
           IY+QGVLQAPR++L P +   E+I+   K+ S  LHQV+ +Q  ES        ++S+ +
Sbjct: 87  IYSQGVLQAPRNILFPCM---ENIS---KEQSNKLHQVIHVQALES--------LVSSPT 132

Query: 149 SSFQPEMLMSKAP---QKPIHK-DTDQPCSGGGE--HLELVYISNPIYESQG---SGENT 199
            S  P    S+AP   +K  H+ + D+  S   E  H +LVYISNPIYE++    SG NT
Sbjct: 133 LSMSP--FTSRAPPPQKKTTHQVNIDEISSSLEEKNHHQLVYISNPIYENEEGKESGVNT 190

Query: 200 PFMTPETSPSRLXXXXXXXXXXXXXXXXX-----------YTPPLSPMKKLPAEASCSVS 248
           PF TP +SPS L                            YTPPL+PMKKL AEA C+VS
Sbjct: 191 PFETPNSSPSHLAKSDSSSDEDGDNNVVAAEIEVCVNSPCYTPPLTPMKKLDAEA-CTVS 249

Query: 249 LRDSRSLGTSGSD 261
           LR++RSLGT+GSD
Sbjct: 250 LREARSLGTNGSD 262