Miyakogusa Predicted Gene

Lj4g3v3061490.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3061490.3 tr|I0Z2S6|I0Z2S6_9CHLO WD40 repeat-like protein
OS=Coccomyxa subellipsoidea C-169 PE=4 SV=1,25,0.00000000001,WD40,WD40
repeat; WD40 repeats,WD40 repeat; F-BOX AND WD40 DOMAIN PROTEIN,NULL;
WD_REPEATS_2,WD40 re,CUFF.52218.3
         (310 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103227.1 | E3 ubiquitin-protein ligase LIN-like protein, ...   551   e-157
Medtr1g090320.2 | E3 ubiquitin-protein ligase LIN-like protein, ...   255   3e-68
Medtr1g090320.3 | E3 ubiquitin-protein ligase LIN-like protein, ...   255   3e-68
Medtr1g090320.1 | E3 ubiquitin-protein ligase LIN-like protein, ...   255   4e-68
Medtr2g436530.1 | E3 ubiquitin-protein ligase LIN-like protein, ...   137   1e-32
Medtr6g465150.1 | zinc finger CCCH domain protein | HC | chr6:23...    59   4e-09

>Medtr8g103227.1 | E3 ubiquitin-protein ligase LIN-like protein,
            putative | HC | chr8:43449553-43456981 | 20130731
          Length = 1335

 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/310 (84%), Positives = 280/310 (90%), Gaps = 1/310 (0%)

Query: 1    MLKVLVKENESTSDIWIHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDNL 60
            MLKVLV ENE  +DIW HKE+IQV+CR NG VLSVICFKDK+ SGH DGSIKVW LKDN 
Sbjct: 1027 MLKVLVDENEPKTDIWRHKEIIQVDCRGNGDVLSVICFKDKIISGHTDGSIKVWTLKDNE 1086

Query: 61   FHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHKL 120
              LLQEIQEHTKAVTNL ISE GDRLYSGSLDRT KIWSIGK AIHC QVHDMKDQIH L
Sbjct: 1087 LLLLQEIQEHTKAVTNLTISEPGDRLYSGSLDRTAKIWSIGKAAIHCEQVHDMKDQIHNL 1146

Query: 121  VVTNSIACFISQGAGVKVQPLNGESKLLNSNKNVKCLTHANGKLYCGCHDSSVQEIHLAT 180
            VVTNS  CFI QGAGVKVQ +NGESKLLNSNK VKCL HA+G+LYCGCHDSSVQEIHLAT
Sbjct: 1147 VVTNSTTCFIPQGAGVKVQSMNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLAT 1206

Query: 181  GTVSSIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSLQTGS 240
            GT+S+IQSGSK+LLGKAYPIHALQ+HGELIYAAGSSLDG+A+KIWNNSNYS+VGSLQTGS
Sbjct: 1207 GTISNIQSGSKRLLGKAYPIHALQVHGELIYAAGSSLDGTAIKIWNNSNYSMVGSLQTGS 1266

Query: 241  EVRAMAVSSELIYLGCKGGAVEIWDKKKHSRVDTLQVGTNCKVNCMALDSIEEILVIGTS 300
            EVRAMAVSSELIYLGCKGG VEIWD KKH +V TLQ+GTNCKVNCMALDS E+ILVIGTS
Sbjct: 1267 EVRAMAVSSELIYLGCKGGVVEIWD-KKHIKVGTLQLGTNCKVNCMALDSNEQILVIGTS 1325

Query: 301  DGQIQAWGMN 310
            DGQIQAW MN
Sbjct: 1326 DGQIQAWEMN 1335


>Medtr1g090320.2 | E3 ubiquitin-protein ligase LIN-like protein,
            putative | HC | chr1:40463443-40471419 | 20130731
          Length = 1488

 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 206/312 (66%), Gaps = 5/312 (1%)

Query: 1    MLKVLVKENE-STSDIWIHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDN 59
            +LK L+  N    +++W  KE+++++   NG VLS+     +V SGHADG+IKVW  +  
Sbjct: 1180 ILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGTIKVWDARKR 1239

Query: 60   LFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHK 119
            +  ++QE +EH KAVT+L    S D+LYS SLD+T ++W+I    I C  V+D+K+ +++
Sbjct: 1240 IPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYE 1297

Query: 120  LVVTNSIACFISQGAGVKVQPLNGESKLLNSNKNVKCLTHANGKLYCGCHDSSVQEIHLA 179
            L     +AC+++QG GVKV       K +N NK VKCL  +  KLYCGC   S+QE+ L+
Sbjct: 1298 LAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLS 1357

Query: 180  TGTVSSIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSLQTG 239
              T +S  +G++KLLGK   IH+LQIH +L++A GSS+D +A KI++ S+  +VGSL TG
Sbjct: 1358 KYTSTSFFTGTRKLLGKQT-IHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTG 1416

Query: 240  SEVRAMAVSSELIYLGCKGGAVEIWDKKKHSRVDTLQV-GTNCKVNCMALDSIEEILVIG 298
             +V  +A++S+ I+ G K G +E+W K K +RV ++++ G N K+  +A D+   +L +G
Sbjct: 1417 LDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVG 1476

Query: 299  TSDGQIQAWGMN 310
            +SDG+IQ W ++
Sbjct: 1477 SSDGKIQVWALD 1488


>Medtr1g090320.3 | E3 ubiquitin-protein ligase LIN-like protein,
            putative | HC | chr1:40463443-40471419 | 20130731
          Length = 1488

 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 206/312 (66%), Gaps = 5/312 (1%)

Query: 1    MLKVLVKENE-STSDIWIHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDN 59
            +LK L+  N    +++W  KE+++++   NG VLS+     +V SGHADG+IKVW  +  
Sbjct: 1180 ILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGTIKVWDARKR 1239

Query: 60   LFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHK 119
            +  ++QE +EH KAVT+L    S D+LYS SLD+T ++W+I    I C  V+D+K+ +++
Sbjct: 1240 IPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYE 1297

Query: 120  LVVTNSIACFISQGAGVKVQPLNGESKLLNSNKNVKCLTHANGKLYCGCHDSSVQEIHLA 179
            L     +AC+++QG GVKV       K +N NK VKCL  +  KLYCGC   S+QE+ L+
Sbjct: 1298 LAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLS 1357

Query: 180  TGTVSSIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSLQTG 239
              T +S  +G++KLLGK   IH+LQIH +L++A GSS+D +A KI++ S+  +VGSL TG
Sbjct: 1358 KYTSTSFFTGTRKLLGKQT-IHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTG 1416

Query: 240  SEVRAMAVSSELIYLGCKGGAVEIWDKKKHSRVDTLQV-GTNCKVNCMALDSIEEILVIG 298
             +V  +A++S+ I+ G K G +E+W K K +RV ++++ G N K+  +A D+   +L +G
Sbjct: 1417 LDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVG 1476

Query: 299  TSDGQIQAWGMN 310
            +SDG+IQ W ++
Sbjct: 1477 SSDGKIQVWALD 1488


>Medtr1g090320.1 | E3 ubiquitin-protein ligase LIN-like protein,
            putative | HC | chr1:40463501-40471127 | 20130731
          Length = 1490

 Score =  255 bits (652), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/312 (41%), Positives = 206/312 (66%), Gaps = 5/312 (1%)

Query: 1    MLKVLVKENE-STSDIWIHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDN 59
            +LK L+  N    +++W  KE+++++   NG VLS+     +V SGHADG+IKVW  +  
Sbjct: 1182 ILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLHYLNGQVLSGHADGTIKVWDARKR 1241

Query: 60   LFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHK 119
            +  ++QE +EH KAVT+L    S D+LYS SLD+T ++W+I    I C  V+D+K+ +++
Sbjct: 1242 IPRVIQETREHKKAVTSLC--SSVDKLYSSSLDKTIRVWTIKPDGIKCIDVYDVKEAVYE 1299

Query: 120  LVVTNSIACFISQGAGVKVQPLNGESKLLNSNKNVKCLTHANGKLYCGCHDSSVQEIHLA 179
            L     +AC+++QG GVKV       K +N NK VKCL  +  KLYCGC   S+QE+ L+
Sbjct: 1300 LAANAKLACYVTQGTGVKVFNWLDAPKFINFNKYVKCLAVSGDKLYCGCSGYSIQEVDLS 1359

Query: 180  TGTVSSIQSGSKKLLGKAYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSLQTG 239
              T +S  +G++KLLGK   IH+LQIH +L++A GSS+D +A KI++ S+  +VGSL TG
Sbjct: 1360 KYTSTSFFTGTRKLLGKQT-IHSLQIHDDLLFACGSSIDATAGKIFSLSSKMVVGSLSTG 1418

Query: 240  SEVRAMAVSSELIYLGCKGGAVEIWDKKKHSRVDTLQV-GTNCKVNCMALDSIEEILVIG 298
             +V  +A++S+ I+ G K G +E+W K K +RV ++++ G N K+  +A D+   +L +G
Sbjct: 1419 LDVHRVAINSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGNTKITSLASDADGMMLFVG 1478

Query: 299  TSDGQIQAWGMN 310
            +SDG+IQ W ++
Sbjct: 1479 SSDGKIQVWALD 1490


>Medtr2g436530.1 | E3 ubiquitin-protein ligase LIN-like protein,
            putative | HC | chr2:14213566-14206242 | 20130731
          Length = 1149

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 153/294 (52%), Gaps = 7/294 (2%)

Query: 17   IHKELIQVECRENGGVLSVICFKDKVFSGHADGSIKVWKLKDNLFHLLQEIQEHTKAVTN 76
            +H ++++     +  V S+I +K  +FSG++DGSIKVW ++ +   LL +I+EH K+VT 
Sbjct: 857  VHTQILEAGRNFSTSVCSLIYYKGLLFSGYSDGSIKVWDIRGHSASLLWDIKEHKKSVTC 916

Query: 77   LVISESGDRLYSGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHKLVVTNSIACFISQGAGV 136
              I E  D L SGS D+T ++W + +  + C +V  MK+ +H L         IS+  G+
Sbjct: 917  FSIYEPLDSLLSGSTDKTIRVWKMNQRNLECLEVIVMKEPVHHLRAHGETIFAISEKQGI 976

Query: 137  KVQPLNGESKLLNSNKNVKCLTHANGKLYCGCHDSSVQEIHLATGTVSSIQSGSKKLLGK 196
            K+   + E + +   K+ KC+   +GKLY GC DSS+QE +        I+  ++    +
Sbjct: 977  KLVNKSREIRDIFKGKHGKCMAVDHGKLYIGCTDSSIQEYNTTHNRELEIKPPTRSWRKQ 1036

Query: 197  AYPIHALQIHGELIYAAGSSLDGSAVKIWNNSNYSLVGSL-QTGSEVRAMAVSSELIYL- 254
            + PI+++  + + +Y+A   ++G+  K W  S    +  L   G  V AM V  + +YL 
Sbjct: 1037 SKPINSIVAYRDWLYSASKHVEGTTFKEWKRSAKPKISILTDKGDNVVAMEVVEDFLYLI 1096

Query: 255  -GCKGGAVEIWDKKKHSRVDTLQVGTNCKVNCMALDSIEEILVIGTSDGQIQAW 307
                  +++IW +    ++  L  G+       ++ +  +I+  GT  G I+ W
Sbjct: 1097 SSSSASSIQIWLRGVPKKLGRLSAGS----RITSIYAANDIIFCGTEKGLIKGW 1146


>Medtr6g465150.1 | zinc finger CCCH domain protein | HC |
           chr6:23065003-23059765 | 20130731
          Length = 438

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 98/211 (46%), Gaps = 28/211 (13%)

Query: 30  GGVLSVICFKDKVFSGHADGSIKVWKLK--DNLFHLLQEIQEHTKAVTNLVISESGDRLY 87
           G V +++   D +F+G  DG+I VWK     N F     ++ HT+ V +LV+    +RLY
Sbjct: 230 GQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVG--ANRLY 287

Query: 88  SGSLDRTTKIWSIGKTAIHCAQVHDMKDQIHKLVVTNS---IACFISQGAGVKVQPLNGE 144
           SGS+D T ++W++    + C Q       +   V+      I+C + +   V     +G 
Sbjct: 288 SGSMDNTVRVWNL--ETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWYATESGN 345

Query: 145 SKLLNSNKN-----VKCLTH-ANGK--LYCGCHDSSVQEIHLATGTVSSIQSGSKKLLGK 196
            ++  ++         C  H A GK  L C C+D++V+   L     S  + G  KL  K
Sbjct: 346 LEVTYTHTEEHGIITLCGMHDAQGKPILLCSCNDNTVRLYDLP----SFAERG--KLFNK 399

Query: 197 AYPIHALQIHGELIYAAGSSLDGSA-VKIWN 226
              + A+Q     I+  G   DG+  V++WN
Sbjct: 400 Q-EVRAIQTGPGSIFFTG---DGTGQVRVWN 426