Miyakogusa Predicted Gene

Lj4g3v3060360.3
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3060360.3 tr|I6M418|I6M418_GOSHI Auxin-responsive protein
OS=Gossypium hirsutum GN=Aux3 PE=2 SV=1,58.95,7e-19,AUX_IAA,AUX/IAA
protein; seg,NULL,CUFF.52230.3
         (108 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g103030.1 | auxin-responsive AUX/IAA family protein | HC |...   108   8e-25
Medtr6g488150.2 | auxin response factor | HC | chr6:33216341-332...    77   5e-15
Medtr6g488150.1 | auxin response factor | HC | chr6:33216291-332...    76   6e-15
Medtr2g101500.1 | auxin-responsive AUX/IAA family protein | HC |...    72   2e-13
Medtr5g030710.2 | auxin-responsive AUX/IAA family protein | HC |...    58   2e-09
Medtr5g030710.1 | auxin-responsive AUX/IAA family protein | HC |...    58   2e-09
Medtr8g067530.1 | auxin-responsive AUX/IAA family protein | HC |...    46   6e-06

>Medtr8g103030.1 | auxin-responsive AUX/IAA family protein | HC |
          chr8:43394828-43391289 | 20130731
          Length = 293

 Score =  108 bits (271), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 70/88 (79%), Gaps = 9/88 (10%)

Query: 1  MESSENFTKRSAGLNLKATELRLGLPGSESPEREGTNGFSAPLKGLLSGAKRGFSDAI-D 59
          ME+ E    RS GLNLKATELRLGLPGSESPERE  NG    LK L+SGAKRGFSDAI D
Sbjct: 15 METKE----RSIGLNLKATELRLGLPGSESPERE--NG--GVLKSLVSGAKRGFSDAITD 66

Query: 60 GGSGNWVLSGNGGSEMGSGKDGVLFSPR 87
          GGSG WVLSGNGGSE+G  KDG LFSP+
Sbjct: 67 GGSGKWVLSGNGGSEVGLCKDGNLFSPK 94


>Medtr6g488150.2 | auxin response factor | HC |
          chr6:33216341-33219347 | 20130731
          Length = 193

 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 49/66 (74%), Gaps = 7/66 (10%)

Query: 1  MESSENFTKRSA-GLNLKATELRLGLPGSESPER-----EGTNGFS-APLKGLLSGAKRG 53
          MESSE F++RS  GLNLKATELRLGLPGSESPER     E  N +S   L  L SGAKRG
Sbjct: 1  MESSEIFSQRSNNGLNLKATELRLGLPGSESPERDNDLLEEKNAYSLCMLNSLFSGAKRG 60

Query: 54 FSDAID 59
          FSDAID
Sbjct: 61 FSDAID 66


>Medtr6g488150.1 | auxin response factor | HC |
          chr6:33216291-33219398 | 20130731
          Length = 254

 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/66 (69%), Positives = 49/66 (74%), Gaps = 7/66 (10%)

Query: 1  MESSENFTKRSA-GLNLKATELRLGLPGSESPER-----EGTNGFS-APLKGLLSGAKRG 53
          MESSE F++RS  GLNLKATELRLGLPGSESPER     E  N +S   L  L SGAKRG
Sbjct: 1  MESSEIFSQRSNNGLNLKATELRLGLPGSESPERDNDLLEEKNAYSLCMLNSLFSGAKRG 60

Query: 54 FSDAID 59
          FSDAID
Sbjct: 61 FSDAID 66


>Medtr2g101500.1 | auxin-responsive AUX/IAA family protein | HC |
           chr2:43637105-43634220 | 20130731
          Length = 326

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 54/100 (54%), Gaps = 26/100 (26%)

Query: 9   KRSAGLNLKATELRLGLPGSESPEREGTNG-------------------FSAPLKGLLS- 48
           K S+ LN K TELRLGLPG ESP+R+  +                      +PLK L++ 
Sbjct: 20  KTSSSLNFKETELRLGLPGCESPDRKSVSAAGAGGGVSFFANKDLKSINVCSPLKNLVAS 79

Query: 49  -GAKRGFSDAIDGGSGNWVLSGNGGSEMGSGKDGVLFSPR 87
            GAKRGFSDAID  S  W  S N GSE GS     LFSPR
Sbjct: 80  VGAKRGFSDAIDESSKKWSFSMNDGSEGGS-----LFSPR 114


>Medtr5g030710.2 | auxin-responsive AUX/IAA family protein | HC |
           chr5:13126019-13120497 | 20130731
          Length = 335

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 25/96 (26%)

Query: 9   KRSAGLNLKATELRLGLPGSESPEREGTNGF------SAPL-----------KGLLSGAK 51
           ++   LNLKATELRLGLPGS+SPERE  + F        PL           K ++SG K
Sbjct: 46  EKKVNLNLKATELRLGLPGSQSPEREMDSDFYLTKLDEKPLFPLLPAKDGLQKNVVSGNK 105

Query: 52  RGFSDAIDGGSGNWVLSGNGGSEMGSGKDGVLFSPR 87
           RGF+D +DG S     +GN G         V+ SPR
Sbjct: 106 RGFADTVDGFSQG-KFNGNTGI-------NVMLSPR 133


>Medtr5g030710.1 | auxin-responsive AUX/IAA family protein | HC |
           chr5:13126144-13120365 | 20130731
          Length = 335

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 25/96 (26%)

Query: 9   KRSAGLNLKATELRLGLPGSESPEREGTNGF------SAPL-----------KGLLSGAK 51
           ++   LNLKATELRLGLPGS+SPERE  + F        PL           K ++SG K
Sbjct: 46  EKKVNLNLKATELRLGLPGSQSPEREMDSDFYLTKLDEKPLFPLLPAKDGLQKNVVSGNK 105

Query: 52  RGFSDAIDGGSGNWVLSGNGGSEMGSGKDGVLFSPR 87
           RGF+D +DG S     +GN G         V+ SPR
Sbjct: 106 RGFADTVDGFSQG-KFNGNTGI-------NVMLSPR 133


>Medtr8g067530.1 | auxin-responsive AUX/IAA family protein | HC |
           chr8:28204029-28199991 | 20130731
          Length = 356

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 22/73 (30%)

Query: 9   KRSAGLNLKATELRLGLPGSESPERE-------GTNGFSAPL---------------KGL 46
           ++   LNLKATELRLGLPGS+SPER+        T     PL               K +
Sbjct: 70  EKKENLNLKATELRLGLPGSQSPERDLDLFPLNSTKLDEKPLFPLLPTKDGICSLSQKTV 129

Query: 47  LSGAKRGFSDAID 59
           +SG KRGF+D ++
Sbjct: 130 VSGNKRGFADTLE 142