Miyakogusa Predicted Gene
- Lj4g3v3056190.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v3056190.1 tr|G7L853|G7L853_MEDTR CRS2-associated factor
OS=Medicago truncatula GN=MTR_8g102850 PE=4
SV=1,67.52,0,CRS1_YhbY,RNA-binding, CRM domain; no
description,RNA-binding, CRM domain; CRM,RNA-binding, CRM
doma,CUFF.52195.1
(736 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g102850.1 | CRS2-associated factor 1 | HC | chr8:43308642-... 947 0.0
Medtr8g102850.2 | CRS2-associated factor 1 | HC | chr8:43308642-... 901 0.0
Medtr8g069825.1 | CRS2-associated factor 1 | HC | chr8:29482243-... 429 e-120
Medtr7g075885.1 | CRS2-associated factor 1 | HC | chr7:28515935-... 285 1e-76
Medtr0194s0020.1 | CRS2-associated factor 1 | HC | scaffold0194:... 257 3e-68
Medtr0194s0020.2 | CRS2-associated factor 1 | HC | scaffold0194:... 227 3e-59
Medtr0194s0020.3 | CRS2-associated factor 1 | HC | scaffold0194:... 187 3e-47
Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | H... 66 1e-10
Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 57 7e-08
Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC | chr1:332... 57 7e-08
Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | H... 54 4e-07
Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:524... 52 2e-06
Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC ... 52 3e-06
Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC ... 52 3e-06
Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC ... 51 4e-06
Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC | chr4:254... 50 6e-06
>Medtr8g102850.1 | CRS2-associated factor 1 | HC |
chr8:43308642-43312417 | 20130731
Length = 698
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/740 (65%), Positives = 561/740 (75%), Gaps = 48/740 (6%)
Query: 1 MALKLATRFSIFXXXXXXXXXXXXSTELRFSLSTSATANNAGQTSH-PT---SKDPRNPT 56
MALKLAT F I +A+NA Q+S PT +K+P P
Sbjct: 1 MALKLATTFPI-------------------------SASNADQSSRRPTGKPNKNPSKPK 35
Query: 57 VDQQSHPAFRFSNIPKSKPRPLTTAPENIKISDDGLSYVVDGAPFEFKYSYTETPKVKPL 116
VD QSHPA +FSNIPK K +P+ PEN+KIS+DG+SYV++GAPFEFKYSYTETPK KP+
Sbjct: 36 VDPQSHPALKFSNIPKQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKSKPV 95
Query: 117 KMREAPYVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFVPG 176
+MRE P+VPFGPVTMPRPWTGR PLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPF+PG
Sbjct: 96 QMREPPFVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFLPG 155
Query: 177 SSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRV 236
+SPRYV SREEVLGEPLTKEE+N+LV+S++KS R L++GRDGF HNMLDNIHAHWKRRRV
Sbjct: 156 TSPRYVMSREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRV 215
Query: 237 CKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFRGRNYNYKTRPHFPLMLWKPV 296
CKIKCIGVCTVDMDNVCQQLEEKTGGKVI R GG++YLFRGRNYN+KTRP FPLMLWKPV
Sbjct: 216 CKIKCIGVCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNYNHKTRPRFPLMLWKPV 275
Query: 297 PPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVR 356
PPVYPRLI +VPEGLT E+A EMRQKGRTLTPICKLGKNGVY+NL NNVREAFEECELVR
Sbjct: 276 PPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVR 335
Query: 357 INCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILMWRGLNWKSSLADLGDDCGESNNKI 416
+NCQGLN+SDYR+IGAKLRDLVPCTL+S+ENEHILMWRG NWKSS DL +D E+ K
Sbjct: 336 VNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPDLVEDFKEA-TKA 394
Query: 417 DNDSRSFKTLPSESPEFSAPCPPKNPAEHVSNLSVETSISSTSNDVTLDKVEVPHPTEKS 476
D D+++ KTL SE+ + S P NP EHVSNLS +TSIS +DVT+DK VP PT+ S
Sbjct: 395 DADNKNDKTLQSEALDVSTPSLNHNPVEHVSNLSHDTSISFCPDDVTVDK--VPCPTKNS 452
Query: 477 EQSACVTINASLTKTSEAETTNDATGSYGEPEPCXXXXXXXXXXYYDSHAERPSKATSHS 536
+QS V +ASLTK EAETTN AT SYGEPE C + H E PS A S S
Sbjct: 453 KQSMSVVADASLTKVYEAETTNVATDSYGEPESCSNTSPGMTISHDSRHTECPSNAISDS 512
Query: 537 HGTEDIMDSKSSCSDGLSASFSGSDRMLSSSENDINGMVDPHADSLLGNSGTSDVSRPSR 596
HGT DIMD K D LS S SGS+ ML S ++I G VDPHAD LL +SG +DVS R
Sbjct: 513 HGTSDIMDDK-GFGDCLSTSISGSNAMLGSRNSNIYGTVDPHADELLNDSGAADVSPLPR 571
Query: 597 SDAPCMERITLLLEQAVEKGSALVLDNDSLDADNIYQTTVSLAKSAPPEPIFTKHWKVAE 656
+ AP M+ I+LLLEQAVE+G+ALVLD DSLDADN+Y+TTVS A+SAPP P+F KH KVA
Sbjct: 572 AAAPFMKGISLLLEQAVEQGNALVLDKDSLDADNVYRTTVSFAQSAPPGPVFMKHRKVAV 631
Query: 657 QRSDKRQGSXXXXXXXXXXXXXXSGMEIGKWENSSKIPKIGMQKGKREKSSKIPRRDNFD 716
Q+SDK++ + + KGKRE+S +I R++NFD
Sbjct: 632 QKSDKQEALTPETRETTTVTTKGTTVA---------------TKGKRERSPRIRRKENFD 676
Query: 717 EQLLNIVPQGTLGVDELAKL 736
E+ +N+VPQGTLGVDELAKL
Sbjct: 677 ERFMNLVPQGTLGVDELAKL 696
>Medtr8g102850.2 | CRS2-associated factor 1 | HC |
chr8:43308642-43312417 | 20130731
Length = 656
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/740 (62%), Positives = 542/740 (73%), Gaps = 90/740 (12%)
Query: 1 MALKLATRFSIFXXXXXXXXXXXXSTELRFSLSTSATANNAGQTSH-PT---SKDPRNPT 56
MALKLAT F I +A+NA Q+S PT +K+P P
Sbjct: 1 MALKLATTFPI-------------------------SASNADQSSRRPTGKPNKNPSKPK 35
Query: 57 VDQQSHPAFRFSNIPKSKPRPLTTAPENIKISDDGLSYVVDGAPFEFKYSYTETPKVKPL 116
VD QSHPA +FSNIPK K +P+ PEN+KIS+DG+SYV++GAPFEFKYSYTETPK KP+
Sbjct: 36 VDPQSHPALKFSNIPKQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKSKPV 95
Query: 117 KMREAPYVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFVPG 176
+MRE P+VPFGPVTMPRPWTGR PLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPF+PG
Sbjct: 96 QMREPPFVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFLPG 155
Query: 177 SSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRV 236
+SPRYV SREEVLGEPLTKEE+N+LV+S++KS R L++GRDGF HNMLDNIHAHWKRRRV
Sbjct: 156 TSPRYVMSREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRV 215
Query: 237 CKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFRGRNYNYKTRPHFPLMLWKPV 296
CKIKCIGVCTVDMDNVCQQLEEKTGGKVI R GG++YLFRGRNYN+KTRP FPLMLWKPV
Sbjct: 216 CKIKCIGVCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLFRGRNYNHKTRPRFPLMLWKPV 275
Query: 297 PPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVR 356
PPVYPRLI +VPEGLT E+A EMRQKGRTLTPICKLGKNGVY+NL NNVREAFEECELVR
Sbjct: 276 PPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVR 335
Query: 357 INCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILMWRGLNWKSSLADLGDDCGESNNKI 416
+NCQGLN+SDYR+IGAKLRDLVPCTL+S+ENEHILMWRG NWKSS DL +D E+ K
Sbjct: 336 VNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPDLVEDFKEA-TKA 394
Query: 417 DNDSRSFKTLPSESPEFSAPCPPKNPAEHVSNLSVETSISSTSNDVTLDKVEVPHPTEKS 476
D D+++ KTL SE+ + S P NP EHVSNLS +TSIS +DVT+DK VP PT+ S
Sbjct: 395 DADNKNDKTLQSEALDVSTPSLNHNPVEHVSNLSHDTSISFCPDDVTVDK--VPCPTKNS 452
Query: 477 EQSACVTINASLTKTSEAETTNDATGSYGEPEPCXXXXXXXXXXYYDSHAERPSKATSHS 536
+QS V +ASLTK EAETTN AT SYGEPE C
Sbjct: 453 KQSMSVVADASLTKVYEAETTNVATDSYGEPESC-------------------------- 486
Query: 537 HGTEDIMDSKSSCSDGLSASFSGSDRMLSSSENDINGMVDPHADSLLGNSGTSDVSRPSR 596
S + GS+ ML S ++I G VDPHAD LL +SG +DVS R
Sbjct: 487 -----------------SNTSPGSNAMLGSRNSNIYGTVDPHADELLNDSGAADVSPLPR 529
Query: 597 SDAPCMERITLLLEQAVEKGSALVLDNDSLDADNIYQTTVSLAKSAPPEPIFTKHWKVAE 656
+ AP M+ I+LLLEQAVE+G+ALVLD DSLDADN+Y+TTVS A+SAPP P+F KH KVA
Sbjct: 530 AAAPFMKGISLLLEQAVEQGNALVLDKDSLDADNVYRTTVSFAQSAPPGPVFMKHRKVAV 589
Query: 657 QRSDKRQGSXXXXXXXXXXXXXXSGMEIGKWENSSKIPKIGMQKGKREKSSKIPRRDNFD 716
Q+SDK++ + + KGKRE+S +I R++NFD
Sbjct: 590 QKSDKQEALTPETRETTTVTTKGTTV---------------ATKGKRERSPRIRRKENFD 634
Query: 717 EQLLNIVPQGTLGVDELAKL 736
E+ +N+VPQGTLGVDELAKL
Sbjct: 635 ERFMNLVPQGTLGVDELAKL 654
>Medtr8g069825.1 | CRS2-associated factor 1 | HC |
chr8:29482243-29475430 | 20130731
Length = 574
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/360 (56%), Positives = 259/360 (71%), Gaps = 10/360 (2%)
Query: 84 NIKISDDGLSYVVDGAPFEFKYSYTETPKVKPLKMREAPYVPFGPVTMPRPWTGRAPLPP 143
++ I + G+SY++ GAPFEF++SY+ETPKVKP+ +RE ++PF P TMPRPWTG+APL
Sbjct: 86 SVIIGESGVSYLLPGAPFEFQFSYSETPKVKPIAIREPAFLPFEPPTMPRPWTGKAPLKK 145
Query: 144 SKKKLKEFDSFVLPPPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVK 203
SKK + FDSF PP KGVK V+ PGPF G P SREE+LGEPL K EV LVK
Sbjct: 146 SKKNIPLFDSFNPPPEGMKGVKKVEMPGPFPVGKFPEEGVSREEILGEPLKKWEVQMLVK 205
Query: 204 SSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGK 263
M +R +++GRDG THNML+ IH+HWKRRRVCKI+C GV TVDMDNVC+ +EEK GGK
Sbjct: 206 PMMADNRQVNLGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIEEKAGGK 265
Query: 264 VIRRMGGILYLFRGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKG 323
+I R GG++YLFRGRNYNY+TRP +P+MLWKP PVYP+LI PEGLT +A E+R KG
Sbjct: 266 IIHRAGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRMKG 325
Query: 324 RTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLI 383
++L PICKL KNGVY L +VR+AFE LV+I+C+GL+ SDY+++GAKL+DLVPC L+
Sbjct: 326 KSLLPICKLAKNGVYTTLVKDVRDAFEGSHLVKIDCKGLDPSDYKKLGAKLKDLVPCVLL 385
Query: 384 SFENEHILMWRGLNWKSSL----------ADLGDDCGESNNKIDNDSRSFKTLPSESPEF 433
SF++E +L+WRG WKS A + D DN S+ + S SP+
Sbjct: 386 SFDDEQVLIWRGKGWKSMYPQAPVFPPAEATITRDLENKGEVDDNQSKHISEMVSISPKM 445
>Medtr7g075885.1 | CRS2-associated factor 1 | HC |
chr7:28515935-28511869 | 20130731
Length = 407
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 189/305 (61%), Gaps = 22/305 (7%)
Query: 100 PFEFKYSYTETPK-VKPLKMREAPYVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLPP 158
PF+F++SYTE+ + V+P+ +RE Y PFGP + R WTG P K+KE D
Sbjct: 86 PFDFRFSYTESSQTVRPIGLREPKYSPFGPDRIDREWTGVCA-PAVDPKVKELD------ 138
Query: 159 PHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSM--KSDRILHMGR 216
G P + RE V G+ LT E LV K+ R ++MGR
Sbjct: 139 ------------GEEDPKLEDERKKKREHVQGDALTNAERKALVLQCERGKTKRQVNMGR 186
Query: 217 DGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFR 276
DG THNML IH HWK +IKC+GV TVDM NVC QLE+KT GKVI R GG L L+R
Sbjct: 187 DGLTHNMLIEIHNHWKYTEAVRIKCMGVPTVDMKNVCTQLEDKTFGKVIFRHGGTLILYR 246
Query: 277 GRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGKNG 336
GRNYN + RP P+MLWKP PVYPRLI +GL+ E+ MR++G + + KL KNG
Sbjct: 247 GRNYNSRKRPAIPVMLWKPHEPVYPRLIKTTIDGLSIEETKAMRKRGLAVPALTKLAKNG 306
Query: 337 VYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILMWRGL 396
Y +L VR+AF CELVRI+CQGL R DY++IG KLRDLVPC L++F+ E I++WRG
Sbjct: 307 YYAHLVTMVRDAFLTCELVRIDCQGLERKDYKKIGCKLRDLVPCVLVTFDKEQIVVWRGN 366
Query: 397 NWKSS 401
++K S
Sbjct: 367 DYKYS 371
>Medtr0194s0020.1 | CRS2-associated factor 1 | HC |
scaffold0194:8811-11324 | 20130731
Length = 333
Score = 257 bits (657), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 185/310 (59%), Gaps = 34/310 (10%)
Query: 100 PFEFKYSYTET-PKVKPLKMREAP-YVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLP 157
PF F YSY+ET P +KP+ RE+P + PFGP + R WTG +
Sbjct: 54 PFNFMYSYSETHPSIKPISFRESPKFSPFGPGRLDRKWTGTS------------------ 95
Query: 158 PPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSD--RILHMG 215
PVQ R+ R VLG PL +EV +LV+ SD R +++G
Sbjct: 96 -------APVQHQV-----DRNRFEEDRNRVLGAPLEDQEVAELVERYRHSDCSRQINLG 143
Query: 216 RDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLF 275
+ G THN LD+IH HWK+ +IKC+GV T+DMDN+C LE+K+GGK+I R IL L+
Sbjct: 144 KGGVTHNTLDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRNMNILILY 203
Query: 276 RGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGKN 335
RGR+Y+ RP PLMLWKP P+YP+L+ V EGLT E+ E+R G P+ KL +N
Sbjct: 204 RGRHYDPNNRPVIPLMLWKPYAPIYPKLVKNVIEGLTHEKTKELRNMGLNSHPLMKLTRN 263
Query: 336 GVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLRDLVPCTLISFENEHILMWRG 395
GVY N+ VREA + E+VR++C + SD ++IG KLRDLVPC I F++E I++WRG
Sbjct: 264 GVYVNVVERVREALKTEEVVRLDCTHVGTSDCKKIGVKLRDLVPCVPILFKDEQIVLWRG 323
Query: 396 LNWKSSLADL 405
+ + +DL
Sbjct: 324 ILNQEQPSDL 333
>Medtr0194s0020.2 | CRS2-associated factor 1 | HC |
scaffold0194:8811-11324 | 20130731
Length = 306
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 164/280 (58%), Gaps = 34/280 (12%)
Query: 100 PFEFKYSYTET-PKVKPLKMREAP-YVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLP 157
PF F YSY+ET P +KP+ RE+P + PFGP + R WTG +
Sbjct: 54 PFNFMYSYSETHPSIKPISFRESPKFSPFGPGRLDRKWTGTS------------------ 95
Query: 158 PPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSD--RILHMG 215
PVQ R+ R VLG PL +EV +LV+ SD R +++G
Sbjct: 96 -------APVQHQV-----DRNRFEEDRNRVLGAPLEDQEVAELVERYRHSDCSRQINLG 143
Query: 216 RDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLF 275
+ G THN LD+IH HWK+ +IKC+GV T+DMDN+C LE+K+GGK+I R IL L+
Sbjct: 144 KGGVTHNTLDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRNMNILILY 203
Query: 276 RGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGKN 335
RGR+Y+ RP PLMLWKP P+YP+L+ V EGLT E+ E+R G P+ KL +N
Sbjct: 204 RGRHYDPNNRPVIPLMLWKPYAPIYPKLVKNVIEGLTHEKTKELRNMGLNSHPLMKLTRN 263
Query: 336 GVYFNLANNVREAFEECELVRINCQGLNRSDYRRIGAKLR 375
GVY N+ VREA + E+VR++C + SD ++IG KLR
Sbjct: 264 GVYVNVVERVREALKTEEVVRLDCTHVGTSDCKKIGVKLR 303
>Medtr0194s0020.3 | CRS2-associated factor 1 | HC |
scaffold0194:8811-11315 | 20130731
Length = 262
Score = 187 bits (476), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 136/239 (56%), Gaps = 34/239 (14%)
Query: 100 PFEFKYSYTET-PKVKPLKMREAP-YVPFGPVTMPRPWTGRAPLPPSKKKLKEFDSFVLP 157
PF F YSY+ET P +KP+ RE+P + PFGP + R WTG +
Sbjct: 54 PFNFMYSYSETHPSIKPISFRESPKFSPFGPGRLDRKWTGTS------------------ 95
Query: 158 PPHKKGVKPVQSPGPFVPGSSPRYVRSREEVLGEPLTKEEVNDLVKSSMKSD--RILHMG 215
PVQ R+ R VLG PL +EV +LV+ SD R +++G
Sbjct: 96 -------APVQHQV-----DRNRFEEDRNRVLGAPLEDQEVAELVERYRHSDCSRQINLG 143
Query: 216 RDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLF 275
+ G THN LD+IH HWK+ +IKC+GV T+DMDN+C LE+K+GGK+I R IL L+
Sbjct: 144 KGGVTHNTLDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIYRNMNILILY 203
Query: 276 RGRNYNYKTRPHFPLMLWKPVPPVYPRLIPRVPEGLTPEQAYEMRQKGRTLTPICKLGK 334
RGR+Y+ RP PLMLWKP P+YP+L+ V EGLT E+ E+R G P+ KL K
Sbjct: 204 RGRHYDPNNRPVIPLMLWKPYAPIYPKLVKNVIEGLTHEKTKELRNMGLNSHPLMKLSK 262
>Medtr6g008410.1 | group IIA intron splicing facilitator CRS1 | HC |
chr6:2256928-2245549 | 20130731
Length = 1045
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
LT E+ L + + + + +G+ G T +++ IH W+R V ++ C +C ++M
Sbjct: 151 LTDGEILRLRELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMKRT 210
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNYNYKTRPHF 288
LE KTGG V+ R G + L+RG +Y Y P+F
Sbjct: 211 HDILERKTGGLVVWRSGSKIILYRGIDYKY---PYF 243
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 186 EEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVC 245
EE+ E +T+EE L + +K L +GR G ++N+H HWK R + KI C
Sbjct: 550 EEIDKESITEEERYMLRRIGLKMKPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNQES 609
Query: 246 TVDMDNVCQQLEEKTGGKVIR----RMGGILYLFRGRNYN 281
+ LE ++GG ++ G + ++RG+NY+
Sbjct: 610 VEYAHQTARTLEAESGGILVAVERVNKGYAIIVYRGKNYS 649
>Medtr1g475240.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33263693-33269751 | 20130731
Length = 838
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
L + E+ L+K + +G G T +D IH WK + ++K G ++M +
Sbjct: 211 LPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRM 270
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNY 280
+ LE+KTGG VI R G + L+RG +Y
Sbjct: 271 HEILEKKTGGLVIWRSGNSVSLYRGVSY 298
>Medtr1g075190.1 | CRS1/YhbY (CRM) domain protein | HC |
chr1:33243553-33249532 | 20130731
Length = 838
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
L + E+ L+K + +G G T +D IH WK + ++K G ++M +
Sbjct: 211 LPESELRRLLKLTFMKKHKTRIGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRM 270
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNY 280
+ LE+KTGG VI R G + L+RG +Y
Sbjct: 271 HEILEKKTGGLVIWRSGNSVSLYRGVSY 298
>Medtr8g066010.1 | group IIA intron splicing facilitator CRS1 | HC |
chr8:27412601-27414644 | 20130731
Length = 373
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 214 MGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIRRMGGILY 273
+G G TH ++D IH W V K K + +M Q LE KTGG V+ R+G +
Sbjct: 11 VGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGSSIV 70
Query: 274 LFRGRNY 280
L+RG +Y
Sbjct: 71 LYRGMSY 77
>Medtr4g126140.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:52429589-52424702 | 20130731
Length = 744
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%)
Query: 183 RSREEVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCI 242
RS E+ + + + E+ L +++ +G G T ++D IH W V K K
Sbjct: 165 RSNTELAEKFIPEHELRRLRNMALRMVERFSVGVAGITQELVDAIHEKWMVDEVVKFKFD 224
Query: 243 GVCTVDMDNVCQQLEEKTGGKVIRRMGGILYLFRGRNY 280
+ +M Q LE KTGG V+ R G + L+RG +Y
Sbjct: 225 SPLSANMKRAHQILESKTGGIVVWRSGSSIVLYRGMSY 262
>Medtr8g104340.1 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 634
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
L KEE++ L + + + + + G T ++L IH W + K+K +M+
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNYNYKT---------------------------- 284
++ +TGG VI R G +++++RG++Y T
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRGKSYQGPTNGNQHESKGGDEKSESVVLNQQQPENMT 225
Query: 285 --RPHFPLML----------WKP---------VPPVYP------RLIP-RVPEGLTPEQA 316
F ML W +PP P R++P R+ LT ++
Sbjct: 226 PEEAEFNRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEH 285
Query: 317 YEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQ-GLNRSDYRRIGAKLR 375
+M + + L LG+N LA + + +E+ + +I + G+ ++ + +L+
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 376 DLVPCTLISFENEHILMWRG 395
L TL+ +IL++RG
Sbjct: 346 KLTGGTLLLRNKYYILIYRG 365
>Medtr8g104340.3 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43952280 | 20130731
Length = 463
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
L KEE++ L + + + + + G T ++L IH W + K+K +M+
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNYNYKT---------------------------- 284
++ +TGG VI R G +++++RG++Y T
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRGKSYQGPTNGNQHESKGGDEKSESVVLNQQQPENMT 225
Query: 285 --RPHFPLML----------WKP---------VPPVYP------RLIP-RVPEGLTPEQA 316
F ML W +PP P R++P R+ LT ++
Sbjct: 226 PEEAEFNRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEH 285
Query: 317 YEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQ-GLNRSDYRRIGAKLR 375
+M + + L LG+N LA + + +E+ + +I + G+ ++ + +L+
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 376 DLVPCTLISFENEHILMWRG 395
L TL+ +IL++RG
Sbjct: 346 KLTGGTLLLRNKYYILIYRG 365
>Medtr8g104340.2 | CRS1/YhbY (CRM) domain protein, putative | HC |
chr8:43946209-43953260 | 20130731
Length = 523
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 105/260 (40%), Gaps = 57/260 (21%)
Query: 193 LTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNV 252
L KEE++ L + + + + + G T ++L IH W + K+K +M+
Sbjct: 106 LEKEELSRLRTMGIHLKQKISIPKSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLA 165
Query: 253 CQQLEEKTGGKVIRRMGGILYLFRGRNYNYKT---------------------------- 284
++ +TGG VI R G +++++RG++Y T
Sbjct: 166 HNIVQRRTGGLVIWRSGSVMWVYRGKSYQGPTNGNQHESKGGDEKSESVVLNQQQPENMT 225
Query: 285 --RPHFPLML----------WKP---------VPPVYP------RLIP-RVPEGLTPEQA 316
F ML W +PP P R++P R+ LT ++
Sbjct: 226 PEEAEFNRMLDDFGPRFVDWWGTGILPVDADLLPPTIPGYRTPLRILPARMHPRLTNDEH 285
Query: 317 YEMRQKGRTLTPICKLGKNGVYFNLANNVREAFEECELVRINCQ-GLNRSDYRRIGAKLR 375
+M + + L LG+N LA + + +E+ + +I + G+ ++ + +L+
Sbjct: 286 TKMLKLAKALPCHFALGRNRNLQGLACAILKLWEKSLVAKIAVKLGVQNTNNELMALELK 345
Query: 376 DLVPCTLISFENEHILMWRG 395
L TL+ +IL++RG
Sbjct: 346 KLTGGTLLLRNKYYILIYRG 365
>Medtr4g067300.1 | CRS1/YhbY (CRM) domain protein | HC |
chr4:25400463-25403698 | 20130731
Length = 428
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 187 EVLGEPLTKEEVNDLVKSSMKSDRILHMGRDGFTHNMLDNIHAHWKRRRVCKIKCIGVCT 246
EV + LT EE + L K + KS L +GR G ++ N+H HWK+ K C
Sbjct: 167 EVKPDGLTGEERHYLKKMAQKSSNYLQVGRRGLFGGVILNMHMHWKKHETVKCICKPCKP 226
Query: 247 VDMDNVCQQLEEKTGGKVIRRMG-GILYLFRGRNY 280
+ Q+L +GG I +G + +RG+NY
Sbjct: 227 GQVHEYAQELARLSGGIPIHIIGDDTIIFYRGKNY 261