Miyakogusa Predicted Gene

Lj4g3v3020580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3020580.2 Non Characterized Hit- tr|I1KJT1|I1KJT1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,63.29,8e-19,coiled-coil,NULL; Snf7,Snf7; SNF7 -
RELATED,NULL,CUFF.52153.2
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g090515.2 | charged multivesicular body protein | HC | chr...   189   7e-49
Medtr6g090515.1 | charged multivesicular body protein | HC | chr...   189   7e-49
Medtr8g102030.1 | charged multivesicular body protein | HC | chr...   177   2e-45
Medtr8g102030.2 | charged multivesicular body protein | HC | chr...   177   2e-45
Medtr8g102020.2 | charged multivesicular body protein | HC | chr...   134   3e-32
Medtr8g102020.1 | charged multivesicular body protein | HC | chr...   134   3e-32

>Medtr6g090515.2 | charged multivesicular body protein | HC |
           chr6:34403252-34407466 | 20130731
          Length = 220

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 102/107 (95%), Gaps = 2/107 (1%)

Query: 1   MFTRIFGKPKQE--ANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRA 58
           MFTR+FGKPKQ+  +NALATLDKLNETL+MLEKKE VL+KKA+ EVEKAK++TK KNK+A
Sbjct: 1   MFTRVFGKPKQDTSSNALATLDKLNETLEMLEKKENVLLKKAAAEVEKAKEYTKRKNKKA 60

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRT
Sbjct: 61  AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 107


>Medtr6g090515.1 | charged multivesicular body protein | HC |
           chr6:34403252-34407494 | 20130731
          Length = 220

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/107 (85%), Positives = 102/107 (95%), Gaps = 2/107 (1%)

Query: 1   MFTRIFGKPKQE--ANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRA 58
           MFTR+FGKPKQ+  +NALATLDKLNETL+MLEKKE VL+KKA+ EVEKAK++TK KNK+A
Sbjct: 1   MFTRVFGKPKQDTSSNALATLDKLNETLEMLEKKENVLLKKAAAEVEKAKEYTKRKNKKA 60

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRT
Sbjct: 61  AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 107


>Medtr8g102030.1 | charged multivesicular body protein | HC |
           chr8:42894174-42889186 | 20130731
          Length = 222

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 99/107 (92%), Gaps = 2/107 (1%)

Query: 1   MFTRIFGKPKQE--ANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRA 58
           MF+++FGK KQ+  AN L+TL+KLNETL MLEKKE VL+KKA+ EVE+AK+FT+AKNKRA
Sbjct: 5   MFSKLFGKTKQDQQANTLSTLEKLNETLGMLEKKESVLLKKAAAEVERAKEFTRAKNKRA 64

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETV ALRT
Sbjct: 65  AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVAALRT 111


>Medtr8g102030.2 | charged multivesicular body protein | HC |
           chr8:42894174-42889186 | 20130731
          Length = 222

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 99/107 (92%), Gaps = 2/107 (1%)

Query: 1   MFTRIFGKPKQE--ANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRA 58
           MF+++FGK KQ+  AN L+TL+KLNETL MLEKKE VL+KKA+ EVE+AK+FT+AKNKRA
Sbjct: 5   MFSKLFGKTKQDQQANTLSTLEKLNETLGMLEKKESVLLKKAAAEVERAKEFTRAKNKRA 64

Query: 59  AIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           AIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETV ALRT
Sbjct: 65  AIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVAALRT 111


>Medtr8g102020.2 | charged multivesicular body protein | HC |
           chr8:42880724-42885022 | 20130731
          Length = 205

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 78/105 (74%), Gaps = 16/105 (15%)

Query: 1   MFTRIFGKPKQEANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRAAI 60
           + TR+ GKPK + +A  T+ KLNETL+MLEKKE VL+KK                   AI
Sbjct: 5   LLTRLLGKPKPKVSAQETIAKLNETLEMLEKKETVLLKKG----------------WTAI 48

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           QCLKRKRLY+QQ+EQLGNFQLRIHDQMIMLEGA+ATTETVDALRT
Sbjct: 49  QCLKRKRLYDQQVEQLGNFQLRIHDQMIMLEGAQATTETVDALRT 93


>Medtr8g102020.1 | charged multivesicular body protein | HC |
           chr8:42880724-42884823 | 20130731
          Length = 205

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 78/105 (74%), Gaps = 16/105 (15%)

Query: 1   MFTRIFGKPKQEANALATLDKLNETLDMLEKKEKVLIKKASQEVEKAKDFTKAKNKRAAI 60
           + TR+ GKPK + +A  T+ KLNETL+MLEKKE VL+KK                   AI
Sbjct: 5   LLTRLLGKPKPKVSAQETIAKLNETLEMLEKKETVLLKKG----------------WTAI 48

Query: 61  QCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRT 105
           QCLKRKRLY+QQ+EQLGNFQLRIHDQMIMLEGA+ATTETVDALRT
Sbjct: 49  QCLKRKRLYDQQVEQLGNFQLRIHDQMIMLEGAQATTETVDALRT 93