Miyakogusa Predicted Gene

Lj4g3v3020510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3020510.1 tr|B9P6Y9|B9P6Y9_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_679276
PE=4,53.52,0.000000000003, ,CUFF.52149.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101990.1 | transmembrane protein, putative | HC | chr8:42...   302   1e-82
Medtr8g101990.2 | transmembrane protein, putative | HC | chr8:42...   250   6e-67
Medtr8g101990.3 | transmembrane protein, putative | HC | chr8:42...   219   2e-57

>Medtr8g101990.1 | transmembrane protein, putative | HC |
           chr8:42866613-42870587 | 20130731
          Length = 194

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 164/194 (84%), Gaps = 1/194 (0%)

Query: 1   MKKLARKFRNSKDDH-YSLPVHDEDSRPLDPQEQEEFVRSLERSQIQQSRVWRRVFAALF 59
           MKKLARKFR + +DH YSLPVHD+DSRPLD +EQEE VRSLE +Q  QSR WR VFAAL 
Sbjct: 1   MKKLARKFRRNSEDHKYSLPVHDDDSRPLDSKEQEELVRSLETNQAHQSRFWRTVFAALV 60

Query: 60  FCYILFHLYSMFNQASSPWELRYHAYFMEETYSWMIISADMVAVLACSFAIIGLLDESMH 119
            CYILF LYS+F+Q SSPWELRYHAYFMEE  SWMIISAD VA+LA SFAI GLL ESMH
Sbjct: 61  SCYILFLLYSIFHQVSSPWELRYHAYFMEEIDSWMIISADFVAILAFSFAIKGLLHESMH 120

Query: 120 HRRWIHYSFFTGVVLAVFWLYYMLRLPKLRWDVIWLPFGPLCASALCLYVDHLLAESSED 179
           HRRWI YS++T +VLA+FWLYYM RLPK  WDVIWLPFGPL AS +CLYVDHLL ESSE+
Sbjct: 121 HRRWIWYSWYTDIVLAIFWLYYMSRLPKFHWDVIWLPFGPLSASTICLYVDHLLTESSEE 180

Query: 180 VRKLRGYMYTYKAS 193
           ++KL GYMY YKAS
Sbjct: 181 IKKLHGYMYAYKAS 194


>Medtr8g101990.2 | transmembrane protein, putative | HC |
           chr8:42866625-42870587 | 20130731
          Length = 162

 Score =  250 bits (638), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/161 (77%), Positives = 136/161 (84%), Gaps = 1/161 (0%)

Query: 1   MKKLARKFRNSKDDH-YSLPVHDEDSRPLDPQEQEEFVRSLERSQIQQSRVWRRVFAALF 59
           MKKLARKFR + +DH YSLPVHD+DSRPLD +EQEE VRSLE +Q  QSR WR VFAAL 
Sbjct: 1   MKKLARKFRRNSEDHKYSLPVHDDDSRPLDSKEQEELVRSLETNQAHQSRFWRTVFAALV 60

Query: 60  FCYILFHLYSMFNQASSPWELRYHAYFMEETYSWMIISADMVAVLACSFAIIGLLDESMH 119
            CYILF LYS+F+Q SSPWELRYHAYFMEE  SWMIISAD VA+LA SFAI GLL ESMH
Sbjct: 61  SCYILFLLYSIFHQVSSPWELRYHAYFMEEIDSWMIISADFVAILAFSFAIKGLLHESMH 120

Query: 120 HRRWIHYSFFTGVVLAVFWLYYMLRLPKLRWDVIWLPFGPL 160
           HRRWI YS++T +VLA+FWLYYM RLPK  WDVIWLPFGPL
Sbjct: 121 HRRWIWYSWYTDIVLAIFWLYYMSRLPKFHWDVIWLPFGPL 161


>Medtr8g101990.3 | transmembrane protein, putative | HC |
           chr8:42866625-42869851 | 20130731
          Length = 145

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 122/145 (84%), Gaps = 1/145 (0%)

Query: 1   MKKLARKFRNSKDDH-YSLPVHDEDSRPLDPQEQEEFVRSLERSQIQQSRVWRRVFAALF 59
           MKKLARKFR + +DH YSLPVHD+DSRPLD +EQEE VRSLE +Q  QSR WR VFAAL 
Sbjct: 1   MKKLARKFRRNSEDHKYSLPVHDDDSRPLDSKEQEELVRSLETNQAHQSRFWRTVFAALV 60

Query: 60  FCYILFHLYSMFNQASSPWELRYHAYFMEETYSWMIISADMVAVLACSFAIIGLLDESMH 119
            CYILF LYS+F+Q SSPWELRYHAYFMEE  SWMIISAD VA+LA SFAI GLL ESMH
Sbjct: 61  SCYILFLLYSIFHQVSSPWELRYHAYFMEEIDSWMIISADFVAILAFSFAIKGLLHESMH 120

Query: 120 HRRWIHYSFFTGVVLAVFWLYYMLR 144
           HRRWI YS++T +VLA+FWLYYM R
Sbjct: 121 HRRWIWYSWYTDIVLAIFWLYYMSR 145