Miyakogusa Predicted Gene

Lj4g3v3019460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3019460.1 Non Characterized Hit- tr|I3TA70|I3TA70_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.22,0,no
description,NULL; 30S RIBOSOMAL PROTEIN S8,Ribosomal protein S8;
Ribosomal_S8,Ribosomal protein S,CUFF.52148.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101910.1 | ribosomal protein S8 | HC | chr8:42834284-4283...   245   8e-66
Medtr8g101910.2 | ribosomal protein S8 | HC | chr8:42834232-4283...   184   2e-47
Medtr4g094598.2 | ribosomal protein S8 | HC | chr4:38336236-3833...   144   2e-35
Medtr4g094598.1 | ribosomal protein S8 | HC | chr4:38336151-3833...   144   2e-35
Medtr1g105415.1 | ribosomal protein S8 | HC | chr1:47433027-4743...   144   2e-35
Medtr4g117470.1 | ribosomal protein S8 | HC | chr4:48718818-4872...   143   4e-35

>Medtr8g101910.1 | ribosomal protein S8 | HC |
           chr8:42834284-42832277 | 20130731
          Length = 129

 Score =  245 bits (625), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 114/129 (88%), Positives = 124/129 (96%)

Query: 1   MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRI 60
           MGRRILNDALRSMVNAE+RGKA VELKPIS VISSFL IMK+RGY+K+F+VYDPHRVGRI
Sbjct: 1   MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRI 60

Query: 61  TVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNV 120
           TVELQGRINDCKALTYRQDLKA+DIEAYRL TLPT+QWGYVVI+TPDGVLDHEEA ++NV
Sbjct: 61  TVELQGRINDCKALTYRQDLKAKDIEAYRLNTLPTHQWGYVVITTPDGVLDHEEAAKRNV 120

Query: 121 GGQVLGYFH 129
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129


>Medtr8g101910.2 | ribosomal protein S8 | HC |
          chr8:42834232-42832191 | 20130731
          Length = 99

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 94/99 (94%)

Query: 1  MGRRILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRI 60
          MGRRILNDALRSMVNAE+RGKA VELKPIS VISSFL IMK+RGY+K+F+VYDPHRVGRI
Sbjct: 1  MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRI 60

Query: 61 TVELQGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWG 99
          TVELQGRINDCKALTYRQDLKA+DIEAYRL TLPT+Q G
Sbjct: 61 TVELQGRINDCKALTYRQDLKAKDIEAYRLNTLPTHQVG 99


>Medtr4g094598.2 | ribosomal protein S8 | HC |
           chr4:38336236-38338200 | 20130731
          Length = 130

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr4g094598.1 | ribosomal protein S8 | HC |
           chr4:38336151-38338274 | 20130731
          Length = 130

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr1g105415.1 | ribosomal protein S8 | HC |
           chr1:47433027-47430285 | 20130731
          Length = 130

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr4g117470.1 | ribosomal protein S8 | HC |
           chr4:48718818-48720181 | 20130731
          Length = 130

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 91/125 (72%)

Query: 5   ILNDALRSMVNAERRGKAAVELKPISTVISSFLQIMKNRGYVKNFEVYDPHRVGRITVEL 64
           +LNDAL+SM NAE+RGK  V ++P S VI  FL +M+  GY+  FE  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 65  QGRINDCKALTYRQDLKARDIEAYRLKTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 124
            GR+N C  ++ R D+  ++IE +  + LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 125 LGYFH 129
           LG+F+
Sbjct: 126 LGFFY 130