Miyakogusa Predicted Gene

Lj4g3v3015100.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3015100.1 Non Characterized Hit- tr|K4C0W4|K4C0W4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,34.82,7e-18,seg,NULL,CUFF.52107.1
         (206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101480.1 | hypothetical protein | HC | chr8:42623599-4262...   151   5e-37

>Medtr8g101480.1 | hypothetical protein | HC |
           chr8:42623599-42622141 | 20130731
          Length = 207

 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/217 (46%), Positives = 126/217 (58%), Gaps = 25/217 (11%)

Query: 2   AGH-RLLKRK---GVDEISHDFSDFSLSSPATKIRRLDSASLLPPIVEEDDQPPSFTNDE 57
           +GH +LLKRK    V +I  DFSDFSLSSPATKIRRLD    LPPIVEE+ +     NDE
Sbjct: 4   SGHFKLLKRKLDGTVVQIGDDFSDFSLSSPATKIRRLDPE--LPPIVEEEGESLPVPNDE 61

Query: 58  RALVLFKXXXXXXXXXXXXTVDSELLSEIKNQQLPWWTREEERDLK----SNNHHLAIVP 113
           RALVLFK            T+ S+L+S IKN QL W  + +  D +     +N  LAIVP
Sbjct: 62  RALVLFKPMNLHSPSDFSLTLSSDLISHIKNNQLSWSKQCDYSDNQDQNEEDNRRLAIVP 121

Query: 114 WVPQSSSFSTLDEDNTN-VELMEADDVMXXXXXXXXXXXXXXXXQDTAVGNAPSTSITNF 172
           WVPQ S+  + D++N+N +ELMEAD++                  +        +S  N+
Sbjct: 122 WVPQPSTSCSEDKNNSNTIELMEADEMGEEQEDEGAMMDVEQEDNN--------SSNYNY 173

Query: 173 PTTMNL---PEGFQQQQQHCFLPHLPQSNSTPITWTR 206
           P  +NL    EGF   QQHCFLP +PQ+ STPITWTR
Sbjct: 174 PAMLNLHHQAEGF---QQHCFLPQIPQNTSTPITWTR 207