Miyakogusa Predicted Gene

Lj4g3v3014330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014330.1 tr|I4C326|I4C326_DESTA 30S ribosomal protein S6
OS=Desulfomonile tiedjei (strain ATCC 49306 / DSM
67,32.35,0.00000002,Ribosomal protein S6,Ribosomal protein S6;
Ribosomal_S6,Ribosomal protein S6, plastid/chloroplast; n,CUFF.52054.1
         (209 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099720.1 | ribosomal protein S6 family protein | HC | chr...   292   2e-79

>Medtr8g099720.1 | ribosomal protein S6 family protein | HC |
           chr8:42207223-42205478 | 20130731
          Length = 195

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/209 (72%), Positives = 169/209 (80%), Gaps = 16/209 (7%)

Query: 1   MASTSLNSIPLTSSS-LNIPHCYXXXXXXXXXXXXRAFKPLFAESKSHCYQKKNDSVFSV 59
           MAS+ LNSIPL+SSS L  PH              RAF     ES SH +Q +N+  FS+
Sbjct: 1   MASSLLNSIPLSSSSYLCTPH---------TCSPFRAF----PESISHFHQNRNN--FSI 45

Query: 60  KAQTLDFTDSFFEGGLGSEDDLNSSGTGLTATEEKEEPQCPPGLRQYETMAVLRPDMSED 119
           K+QTLDF+ SFFEGG GS DD  + GTG TA EEKEEPQCPPGLRQYETM VLRPDMSED
Sbjct: 46  KSQTLDFSGSFFEGGFGSGDDPVTPGTGFTAVEEKEEPQCPPGLRQYETMVVLRPDMSED 105

Query: 120 ERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLYTYFTK 179
           ERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY+I+KKNK GETNTY+DGIYLL+TYFTK
Sbjct: 106 ERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYNIQKKNKEGETNTYMDGIYLLFTYFTK 165

Query: 180 PESIVALEETLLADDDVLRSTTFKIKKRK 208
           PESI ALE+TLL DD+V+RST+FKI+KRK
Sbjct: 166 PESITALEQTLLRDDNVIRSTSFKIRKRK 194