Miyakogusa Predicted Gene

Lj4g3v3014230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014230.1 tr|B6U757|B6U757_MAIZE RNA polymerase II
transcriptional coactivator KELP OS=Zea mays PE=2
SV=1,60,3e-17,seg,NULL; RNA POLYMERASE II TRANSCRIPTIONAL
COACTIVATOR,NULL; ssDNA-binding transcriptional regulato,CUFF.52046.1
         (160 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099650.1 | RNA polymerase II transcriptional coactivator ...   188   2e-48
Medtr8g099650.2 | RNA polymerase II transcriptional coactivator ...   149   8e-37
Medtr8g099650.3 | RNA polymerase II transcriptional coactivator ...   149   8e-37
Medtr3g096690.2 | RNA polymerase II transcriptional coactivator ...    60   1e-09
Medtr3g096690.1 | RNA polymerase II transcriptional coactivator ...    60   1e-09
Medtr0021s0240.1 | transcriptional coactivator p15, PC4 protein ...    49   2e-06

>Medtr8g099650.1 | RNA polymerase II transcriptional coactivator
           KELP protein | HC | chr8:42150276-42154132 | 20130731
          Length = 169

 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 10/168 (5%)

Query: 3   NDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAF-- 60
           +D ETK RIEE V KIL+ESNMD+VTESKIRKQAS EL L+LS PPFKAFVKQ+++ F  
Sbjct: 2   DDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEDFLL 61

Query: 61  --------XXXXXXXXXXXXXXXGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTL 112
                                   G   +   +DD GDL+IC+L +KRKVTIQDF+G+T 
Sbjct: 62  QKQQEQQNEKKEEEEEEKQQVKQEGASNRSTVYDDSGDLVICELGKKRKVTIQDFKGRTF 121

Query: 113 VSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160
           VSIRE+Y KDGK+LP+SKGISLT+EQW  FKK VP +E+AI+K ESR+
Sbjct: 122 VSIREFYTKDGKELPSSKGISLTQEQWLAFKKIVPDIEQAIQKKESRV 169


>Medtr8g099650.2 | RNA polymerase II transcriptional coactivator
           KELP protein | HC | chr8:42150276-42154132 | 20130731
          Length = 142

 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 95/139 (68%), Gaps = 10/139 (7%)

Query: 3   NDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAF-- 60
           +D ETK RIEE V KIL+ESNMD+VTESKIRKQAS EL L+LS PPFKAFVKQ+++ F  
Sbjct: 2   DDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEDFLL 61

Query: 61  --------XXXXXXXXXXXXXXXGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTL 112
                                   G   +   +DD GDL+IC+L +KRKVTIQDF+G+T 
Sbjct: 62  QKQQEQQNEKKEEEEEEKQQVKQEGASNRSTVYDDSGDLVICELGKKRKVTIQDFKGRTF 121

Query: 113 VSIREYYRKDGKDLPTSKG 131
           VSIRE+Y KDGK+LP+SKG
Sbjct: 122 VSIREFYTKDGKELPSSKG 140


>Medtr8g099650.3 | RNA polymerase II transcriptional coactivator
           KELP protein | HC | chr8:42150276-42154132 | 20130731
          Length = 142

 Score =  149 bits (377), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 95/139 (68%), Gaps = 10/139 (7%)

Query: 3   NDPETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAF-- 60
           +D ETK RIEE V KIL+ESNMD+VTESKIRKQAS EL L+LS PPFKAFVKQ+++ F  
Sbjct: 2   DDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEDFLL 61

Query: 61  --------XXXXXXXXXXXXXXXGGGVTQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTL 112
                                   G   +   +DD GDL+IC+L +KRKVTIQDF+G+T 
Sbjct: 62  QKQQEQQNEKKEEEEEEKQQVKQEGASNRSTVYDDSGDLVICELGKKRKVTIQDFKGRTF 121

Query: 113 VSIREYYRKDGKDLPTSKG 131
           VSIRE+Y KDGK+LP+SKG
Sbjct: 122 VSIREFYTKDGKELPSSKG 140


>Medtr3g096690.2 | RNA polymerase II transcriptional coactivator |
           HC | chr3:44248630-44250867 | 20130731
          Length = 107

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 80  TQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQW 139
           T  K+ +DD   I+ ++ + R+V+++ +  +  V IRE+Y KDGK LP  KGISL  EQW
Sbjct: 30  TAKKDTEDDSGDIVFEIGKNRRVSVRTWNKQPWVDIREFYTKDGKQLPGKKGISLNMEQW 89

Query: 140 STFKKNVPAVEKAI 153
              + ++  ++ A+
Sbjct: 90  IVLRDHIEEIDNAV 103


>Medtr3g096690.1 | RNA polymerase II transcriptional coactivator |
           HC | chr3:44248657-44250867 | 20130731
          Length = 107

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 80  TQDKEFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQW 139
           T  K+ +DD   I+ ++ + R+V+++ +  +  V IRE+Y KDGK LP  KGISL  EQW
Sbjct: 30  TAKKDTEDDSGDIVFEIGKNRRVSVRTWNKQPWVDIREFYTKDGKQLPGKKGISLNMEQW 89

Query: 140 STFKKNVPAVEKAI 153
              + ++  ++ A+
Sbjct: 90  IVLRDHIEEIDNAV 103


>Medtr0021s0240.1 | transcriptional coactivator p15, PC4 protein |
           LC | scaffold0021:105424-103791 | 20130731
          Length = 169

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 102 VTIQDFRGKTLVSIREYYRKDGKDLPTSKGISLTEEQWSTFKKNVPAVEKAIE 154
           VTIQ + G  LVSIR ++   G+  P SKGISLT +QW   KKN+ A+EKA  
Sbjct: 26  VTIQ-YSGVKLVSIRRFHWVKGERRP-SKGISLTVQQWLNLKKNMDAIEKAYH 76