Miyakogusa Predicted Gene

Lj4g3v3014210.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3014210.1 Non Characterized Hit- tr|B7FK32|B7FK32_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,35.04,0.0000000000002,no description,NULL; NTF2-like,NULL;
F-box domain,F-box domain, cyclin-like; seg,NULL;
SnoaL_3,NULL;,CUFF.52042.1
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099610.1 | nuclear transport factor 2 (NTF2) family prote...   451   e-127
Medtr4g019910.1 | SnoaL-like domain protein | HC | chr4:6364560-...    83   3e-16

>Medtr8g099610.1 | nuclear transport factor 2 (NTF2) family protein
           | HC | chr8:42114160-42117440 | 20130731
          Length = 284

 Score =  451 bits (1160), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 221/286 (77%), Positives = 238/286 (83%), Gaps = 9/286 (3%)

Query: 1   MEIFSALSEPFLVAVIVTXXXXXXXXXXXXXXXXXXXXXXKKSTPPRKHCDCALSDSA-- 58
           M+IFS  S+PFL+AV VT                      ++ TP  KHC+CA SDS   
Sbjct: 1   MDIFSNFSQPFLLAVTVTALCFFIALFSFFRTFSLS----RRFTPSTKHCNCASSDSNSD 56

Query: 59  AAVPYLNGGSAEMLEASHAPVAPVVLAERRTGSSMMEELVPEITTHALSYLDYPSLCRLS 118
           A VPYLNGG ++M E S  PV   VLA+RRTGSSMMEELVPEITTHALSYLDYPSLCRLS
Sbjct: 57  AVVPYLNGGFSQMTEISPPPV---VLADRRTGSSMMEELVPEITTHALSYLDYPSLCRLS 113

Query: 119 MTNSLMRKAANDDNAWKALYHKDFTWEQDSITPVNGWKAYYAATRAIVNINTEFFNIIRD 178
           MTNSLMRKAANDDNAWKALYHKDFT EQDS+ P NGWKAYYAATRAIV +NTEFFNI+RD
Sbjct: 114 MTNSLMRKAANDDNAWKALYHKDFTLEQDSVRPSNGWKAYYAATRAIVIVNTEFFNILRD 173

Query: 179 KSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVFNWEQGLNFQVRDVRARVLTD 238
           KSI AMSRFWLNADYVKC+HASGELFSGYN VMQSWQLVFNW+QGLNFQV DVRARVLTD
Sbjct: 174 KSISAMSRFWLNADYVKCVHASGELFSGYNGVMQSWQLVFNWDQGLNFQVLDVRARVLTD 233

Query: 239 MAWVTMKTFVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVMNGEVDQ 284
           MAWVTMKT+VDMDTGPFNVTNVFEFHNGRWYMVHHHSSVMNG+V+Q
Sbjct: 234 MAWVTMKTYVDMDTGPFNVTNVFEFHNGRWYMVHHHSSVMNGDVEQ 279


>Medtr4g019910.1 | SnoaL-like domain protein | HC |
           chr4:6364560-6361835 | 20130731
          Length = 255

 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 104/242 (42%), Gaps = 30/242 (12%)

Query: 64  LNGGSAEMLEASHAPVAPVVLAERRTGSSMMEELVPEITTHALSYLDYPSLC-------R 116
            NG S+ + E S  P   V+ +  +     ++   P       S+     LC       +
Sbjct: 10  FNGLSSTLKEFSFLP-GSVINSFHKRHDVCLQSFNPNKLVFGKSFERGDELCLLPNQCLK 68

Query: 117 LSMTNSLMRKAANDDNAWKALYHKDFTWE--------QDSITPVNGWKA----------Y 158
           L M     R+    ++A   L  +D   +        Q++I   N  KA           
Sbjct: 69  LQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQNAIAEENYAKAAEIRDTLKNLQ 128

Query: 159 YAATRAIVNINTEFFNIIRDKSIPAMSRFWLNADYVKCIHASGELFSGYNAVMQSWQLVF 218
             +  A+   N++F++  R+  + AM   W   D V C+H   +  SGY+ V++SW  V+
Sbjct: 129 KDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKMDEVCCVHPGMKGISGYDDVIESWDFVW 188

Query: 219 -NWEQGLNFQVRDVRARVLTDMAWVTMKTFVDMDTGPFN---VTNVFEFHNGRWYMVHHH 274
            N+E  L  ++ D++     DM +VT   FV    G +    VTNVFE  NG W++ +HH
Sbjct: 189 ANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKAKGGRWGGQFVTNVFERINGEWFICNHH 248

Query: 275 SS 276
           +S
Sbjct: 249 AS 250