Miyakogusa Predicted Gene

Lj4g3v3004120.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3004120.3 Non Characterized Hit- tr|I1KPK3|I1KPK3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.12812
PE,82.58,0,coiled-coil,NULL; seg,NULL; PPR,Pentatricopeptide
repeat,CUFF.52030.3
         (571 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099525.1 | PPR superfamily protein | HC | chr8:42014488-4...   880   0.0  

>Medtr8g099525.1 | PPR superfamily protein | HC |
           chr8:42014488-42020624 | 20130731
          Length = 565

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/571 (77%), Positives = 484/571 (84%), Gaps = 6/571 (1%)

Query: 1   MTLNLSTPSFSRXXXXXXXXXXXXXKFSHNAFPTLSFPAFSLPNSPRFLNAKASVSESRN 60
           M LN+STPSFSR              +S+      S+P F      +F+N KAS+SES+N
Sbjct: 1   MILNISTPSFSRILPHPSSSFKLSETYSNRN--NASYPVFIFTKPLKFINLKASISESQN 58

Query: 61  ETSDDHTVSASDQQLLLRISATAKDADEALQMIADNAETNSGGGVVSTSDCCSIISAALS 120
           ETS+  + +  DQQLLLR++ATAKDADEALQ+IADN+ TN  GGVVSTSDCCSIISAAL 
Sbjct: 59  ETSN--SNNLLDQQLLLRVAATAKDADEALQLIADNSSTN--GGVVSTSDCCSIISAALE 114

Query: 121 RNNPQLALSVFYAMRASFRQVDENGPLVERWKWPRPNANVYTVLINGLAASLRVSDALSV 180
           RNNPQLALSVFY+MR++F QV E+GPLVERWKW RPNA VYT+LI GLAASLRVSDALSV
Sbjct: 115 RNNPQLALSVFYSMRSTFHQVGESGPLVERWKWSRPNARVYTLLIQGLAASLRVSDALSV 174

Query: 181 IKYICEVGVSPGEEVPFGKIVRCPSCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGDIVS 240
           +KYICEVGVSP EEVPFGKIVRCP+CRIAVAVAQPQQGIQIVSCAKCRYQYELVSG+IV+
Sbjct: 175 VKYICEVGVSPSEEVPFGKIVRCPTCRIAVAVAQPQQGIQIVSCAKCRYQYELVSGNIVN 234

Query: 241 IQSEEISMDITAWERGLRFLKLMKQSIPSAVHSIVVQTPSGVARTHRFATETVDLPAQAG 300
           IQSEEISMDITAW++GLRFLKLMKQSIPSAVHSIVVQTPSG+ARTHRFATETVDLPAQ G
Sbjct: 235 IQSEEISMDITAWKKGLRFLKLMKQSIPSAVHSIVVQTPSGMARTHRFATETVDLPAQEG 294

Query: 301 ERVSVAVAAPSNVYRKVGPFKFSPRAPDFYPGEAMCITNHKDGRESLLLRAPRKEENXXX 360
           ERV+VAVAAPSNVYRK+GP K S RAPD YPGEAMCITNHKDGRES L+RAP K+EN   
Sbjct: 295 ERVTVAVAAPSNVYRKLGPIKLSSRAPDLYPGEAMCITNHKDGRESRLVRAPTKDENSSL 354

Query: 361 XXXXXXXXXXAVFATGDAASGLIDPSLPQLLSIVAVSSLAVGSTLNSFVLPQLNQLPQRS 420
                     A+FATGDAASGLIDPSLPQ LS+VAVSSLA+GS LNSFV PQ NQLPQRS
Sbjct: 355 LKPSILFPLLALFATGDAASGLIDPSLPQFLSVVAVSSLAIGSALNSFVFPQFNQLPQRS 414

Query: 421 VETTAVKQQLLSQYDVLQSRINGLKEAAEKEIWMLARMCQLENKISAVGEPSYRTRISKV 480
           VE TA+KQ+LLSQYD+LQSRIN LKEAAEKE+WMLARMCQLENKISAVGEPSYRTRISKV
Sbjct: 415 VEVTAIKQRLLSQYDMLQSRINDLKEAAEKEVWMLARMCQLENKISAVGEPSYRTRISKV 474

Query: 481 KRVRESLQNSLQGRIELIASYARXXXXXXXXXXXXTDVLAAETASDVDSITEQIEQIMEL 540
           KRVRESLQNSLQGRIELIASYAR            TDVLAAET SDVD  TEQIEQIMEL
Sbjct: 475 KRVRESLQNSLQGRIELIASYARISSMIEIEVEMETDVLAAETTSDVDGFTEQIEQIMEL 534

Query: 541 ENLEERWKMQAEASDEAERLLSSQSMPSEEV 571
           ENLEERWKMQAEA+DEAERLLSSQ +P +EV
Sbjct: 535 ENLEERWKMQAEANDEAERLLSSQPVPLDEV 565