Miyakogusa Predicted Gene

Lj4g3v3002670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v3002670.1 Non Characterized Hit- tr|F2U4M4|F2U4M4_SALS5
Putative uncharacterized protein OS=Salpingoeca sp.
(s,33.54,0.000000000000006,coiled-coil,NULL; seg,NULL; high mobility
group,High mobility group, superfamily; HMG_box,High
mobil,CUFF.52004.1
         (333 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g099305.1 | high mobility group (HMG)-box protein | HC | c...   285   3e-77
Medtr1g022345.2 | FACT complex subunit SSRP1 | HC | chr1:7068528...    50   4e-06
Medtr1g022345.1 | FACT complex subunit SSRP1 | HC | chr1:7068528...    50   4e-06
Medtr5g082570.1 | FACT complex subunit SSRP1 | HC | chr5:3550256...    49   5e-06

>Medtr8g099305.1 | high mobility group (HMG)-box protein | HC |
           chr8:41820095-41822791 | 20130731
          Length = 476

 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/343 (52%), Positives = 209/343 (60%), Gaps = 27/343 (7%)

Query: 1   MADTVAVAEVPPKRSRGGRKALKEKTPSTNEANIIAGKVSESSASPISKN---------- 50
           MAD VA   +P K+SRG RKALKEK PSTN+ANIIAG   E++ SPIS+N          
Sbjct: 1   MADVVAEIPIPTKKSRGSRKALKEK-PSTNDANIIAG---EATISPISENLSNPKKGKAA 56

Query: 51  ----QQSKQQSFEKDLLEMQEKMQQMRXXXXXXXXXXXARDXXXXXXXXXXXXXXXXXXX 106
               Q  K++SFE+DLLEMQEKM+Q+R           A+D                   
Sbjct: 57  SKKQQNPKERSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEELENRGKELKK 116

Query: 107 XXXXXXXXXXXXXFKPTMNLPMLXXXXXXXXXXXXXNGGSETKRPSPPYILWMKDQWSEI 166
                          PTMNLPM+             NG  E KRPS  Y+LW+KDQW E+
Sbjct: 117 LQKLKEFK-------PTMNLPMVKDKEQEKKEKKK-NGCPEKKRPSSAYMLWVKDQWHEV 168

Query: 167 KKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAYLLVTAKEKREIEAMKLLE 226
           KK NPEAEFK+ISN+LG KWKTVS EEKKPYEE+Y AEKEAYL V  KEKREIEAMKLLE
Sbjct: 169 KKENPEAEFKDISNILGTKWKTVSEEEKKPYEEKYQAEKEAYLQVITKEKREIEAMKLLE 228

Query: 227 EEHKQKTAMELLEQYMQFXXXXXXXXXXXXXXXXXXXXXXXMSAYFLFTNERRAALLAEN 286
           EE KQKTAMELLEQ+MQF                       MSA+FLFTN+RRAA+LA+N
Sbjct: 229 EEQKQKTAMELLEQFMQFKQDAEKESKKNKKEKDPLKPKHPMSAFFLFTNDRRAAILADN 288

Query: 287 MKVLEVPKVTAEEWKNMTEEQKRPYEEVFALKFHSLFGHELHS 329
             +LEV K+TAEEWKNMTEEQKRPYEE+ A K    +  E+ +
Sbjct: 289 KGILEVSKITAEEWKNMTEEQKRPYEEI-AKKNREQYAQEMEA 330


>Medtr1g022345.2 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 149 KRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAY 208
           KR    ++ + + +   +KK+NP   F ++  +LG KWK +SAEEK+PYE +   +K+ Y
Sbjct: 559 KRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQEDKKRY 618


>Medtr1g022345.1 | FACT complex subunit SSRP1 | HC |
           chr1:7068528-7074782 | 20130731
          Length = 643

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 149 KRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAY 208
           KR    ++ + + +   +KK+NP   F ++  +LG KWK +SAEEK+PYE +   +K+ Y
Sbjct: 559 KRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQEDKKRY 618


>Medtr5g082570.1 | FACT complex subunit SSRP1 | HC |
           chr5:35502565-35497078 | 20130731
          Length = 648

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 149 KRPSPPYILWMKDQWSEIKKSNPEAEFKEISNMLGAKWKTVSAEEKKPYEERYHAEKEAY 208
           KR    ++ + + +   IKK+NP   F +++ +LG  WK +SAEEK+PYE +   +K+ Y
Sbjct: 564 KRGMSGFMFFSQMERENIKKANPGISFTDVAKLLGENWKKMSAEEKEPYEAKARVDKKRY 623