Miyakogusa Predicted Gene

Lj4g3v2951040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2951040.1 Non Characterized Hit- tr|K4CIT3|K4CIT3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40,2e-18,TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT
ALPHA,NULL; TRANSLATION INITIATION FACTOR
EIF-2B,Initia,NODE_33481_length_478_cov_109.451881.path2.1
         (147 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g097370.1 | tubby C 2 protein | HC | chr8:40805821-4080484...   226   4e-60
Medtr8g097390.1 | tubby C 2 protein | HC | chr8:40812627-4081160...   221   2e-58
Medtr0415s0060.1 | tubby C 2 protein | HC | scaffold0415:14576-1...   218   1e-57
Medtr8g097400.1 | tubby C 2 protein | HC | chr8:40817758-4081683...   214   3e-56
Medtr8g097410.1 | tubby C 2 protein | HC | chr8:40826440-4082538...   210   4e-55
Medtr8g097380.1 | tubby C 2 protein | HC | chr8:40807475-4080656...   207   2e-54
Medtr0559s0010.1 | LURP-one-like protein | HC | scaffold0559:392...   102   2e-22
Medtr8g023060.1 | tubby C 2 protein | HC | chr8:8230795-8229295 ...    96   1e-20
Medtr2g103840.1 | LURP-one-like protein | HC | chr2:44705927-447...    57   6e-09
Medtr2g103850.1 | LURP-one-like protein | HC | chr2:44715912-447...    55   2e-08
Medtr8g099000.1 | tubby C 2 protein | HC | chr8:41518271-4151699...    52   2e-07

>Medtr8g097370.1 | tubby C 2 protein | HC | chr8:40805821-40804842 |
           20130731
          Length = 228

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 129/152 (84%), Gaps = 6/152 (3%)

Query: 1   MAKIFPQESTSSECINSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREV 60
           MAK++P +  S  CI+++RETYT+WMKSLVLHSNGCT YDSNGDIVYRV+NYDRKG REV
Sbjct: 1   MAKVYPHQE-SINCISNKRETYTVWMKSLVLHSNGCTAYDSNGDIVYRVENYDRKGGREV 59

Query: 61  NLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN---TGKVACQI 116
           NLM+L+G VLCTIKKRLLA G WEGH+YCSNS+  SQ EQPWFQVKRC+   TGK+ACQI
Sbjct: 60  NLMNLKGNVLCTIKKRLLAFGCWEGHKYCSNSNIRSQEEQPWFQVKRCHKIITGKIACQI 119

Query: 117 KVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
           KVGCQ  CI RIS GK+ AF+IV KDG I+A+
Sbjct: 120 KVGCQNLCIERISIGKSFAFRIVNKDGQIIAD 151


>Medtr8g097390.1 | tubby C 2 protein | HC | chr8:40812627-40811605 |
           20130731
          Length = 200

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 131/156 (83%), Gaps = 9/156 (5%)

Query: 1   MAKIFP-QESTSSECI---NSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKG 56
           MAK+ P QESTSS+ +   +++RETYT+WMKSLVLHSNGCTVYDS G+IVYRVDNYD+KG
Sbjct: 1   MAKVHPHQESTSSDSLISRSNKRETYTVWMKSLVLHSNGCTVYDSKGNIVYRVDNYDKKG 60

Query: 57  TREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN---TGKV 112
            REVNLMDL+G VLCTIKKRLL  G WEGH+YC+NS++ SQ EQPWFQVKRC+   +GK+
Sbjct: 61  GREVNLMDLQGNVLCTIKKRLLVFGCWEGHKYCNNSTFRSQKEQPWFQVKRCHKVFSGKI 120

Query: 113 ACQIKVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
           ACQIKVG Q  CI RIS GK+ AF+IV KDG I+AE
Sbjct: 121 ACQIKVGSQNLCIERISIGKSFAFRIVNKDGEIIAE 156


>Medtr0415s0060.1 | tubby C 2 protein | HC |
           scaffold0415:14576-15530 | 20130731
          Length = 200

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/156 (71%), Positives = 131/156 (83%), Gaps = 9/156 (5%)

Query: 1   MAKIFP-QESTSSECI---NSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKG 56
           MAK+ P QESTSS+ +   +++RETYT+WMKSLVLHSNGCTVYDSNG+IVYRVDNYD+KG
Sbjct: 1   MAKVHPHQESTSSDSLISRSNKRETYTVWMKSLVLHSNGCTVYDSNGNIVYRVDNYDKKG 60

Query: 57  TREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN---TGKV 112
            REVNLMDL+G +LCTIKK LLA G WEG++YC+NS++ SQ EQPWFQVKRC    TGKV
Sbjct: 61  RREVNLMDLQGNLLCTIKKTLLAFGCWEGYKYCNNSNFGSQEEQPWFQVKRCTKIITGKV 120

Query: 113 ACQIKVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
           ACQIKVG Q  CI RIS GK+ AF+IV K+G I+AE
Sbjct: 121 ACQIKVGSQNLCIERISTGKSFAFRIVNKNGEIIAE 156


>Medtr8g097400.1 | tubby C 2 protein | HC | chr8:40817758-40816834 |
           20130731
          Length = 205

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/161 (68%), Positives = 128/161 (79%), Gaps = 14/161 (8%)

Query: 1   MAKIFPQ-ESTSSECINSE--------RETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDN 51
           MA+I+PQ EST+    N +        RETYT+WMKSLVLHSNGCTVYDSNG+IVYRVDN
Sbjct: 1   MARIYPQQESTACSVSNDQCHISRSNKRETYTVWMKSLVLHSNGCTVYDSNGNIVYRVDN 60

Query: 52  YDRKGTREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN-- 108
           YD+KG REVNLMDL+G +LCTIKK LLA G WEG++YC+NS++ SQ EQPWFQVKRC   
Sbjct: 61  YDKKGRREVNLMDLQGNLLCTIKKTLLAFGCWEGYKYCNNSNFGSQEEQPWFQVKRCTKI 120

Query: 109 -TGKVACQIKVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
            TGKVACQIKVG Q  CI RIS GK+ AF+IV K+G I+AE
Sbjct: 121 ITGKVACQIKVGSQNLCIERISTGKSFAFRIVNKNGEIIAE 161


>Medtr8g097410.1 | tubby C 2 protein | HC | chr8:40826440-40825386 |
           20130731
          Length = 205

 Score =  210 bits (534), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 108/161 (67%), Positives = 129/161 (80%), Gaps = 14/161 (8%)

Query: 1   MAKIFP-QESTSS-----ECIN---SERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDN 51
           M +++P QEST+S      C+N   ++RETYT+WMKSLVLHSNGCTVYDSNG IVYRV+N
Sbjct: 1   MTRVYPHQESTTSSESHNRCLNRSCNKRETYTVWMKSLVLHSNGCTVYDSNGSIVYRVEN 60

Query: 52  YDRKGTREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN-- 108
           YDRKG REV LM+L+G VLCTIKKRLLA G WEGH+YC+NSS   Q EQPWF+VKRC+  
Sbjct: 61  YDRKGGREVTLMNLKGNVLCTIKKRLLAFGCWEGHKYCNNSSLRRQEEQPWFKVKRCHKV 120

Query: 109 -TGKVACQIKVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
            +GK+ACQIKVG Q  CI RIS GK+ AF+IV K+G I+AE
Sbjct: 121 ISGKIACQIKVGSQNMCIERISIGKSFAFRIVNKNGEIIAE 161


>Medtr8g097380.1 | tubby C 2 protein | HC | chr8:40807475-40806560 |
           20130731
          Length = 205

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/161 (65%), Positives = 129/161 (80%), Gaps = 14/161 (8%)

Query: 1   MAKIFP-QESTSS-----ECI---NSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDN 51
           M K++P QEST+S      C+   +++RE YT+WMKSLVLHSNGCTVYDS G+IVYRVDN
Sbjct: 1   MGKVYPHQESTTSSKSHDHCLISRSNKRERYTVWMKSLVLHSNGCTVYDSKGNIVYRVDN 60

Query: 52  YDRKGTREVNLMDLRGKVLCTIKKRLLAIGSWEGHRYCSNSSYTSQ-EQPWFQVKRCN-- 108
           YD+KG REVNLMD +G +LCTIKK LLA G WEG++YC+NSS  SQ EQPWF+VKRC+  
Sbjct: 61  YDKKGKREVNLMDQQGNLLCTIKKTLLAFGCWEGYKYCNNSSLKSQEEQPWFKVKRCHKV 120

Query: 109 -TGKVACQIKVGCQKYCIVRIS-GKAAAFKIVTKDGHIVAE 147
            +GK+ACQIKVGCQ  CI RIS GK+ AF+I+ KDG I+AE
Sbjct: 121 FSGKIACQIKVGCQNLCIERISIGKSFAFRIINKDGEIIAE 161


>Medtr0559s0010.1 | LURP-one-like protein | HC |
          scaffold0559:3922-3667 | 20130731
          Length = 85

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 63/79 (79%), Gaps = 9/79 (11%)

Query: 1  MAKIFP-QESTSS-----ECIN---SERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDN 51
          M +++P QEST+S      C+N   ++RETYT+WMKSLVLHSNGCTVYDSNG IVYRV+N
Sbjct: 1  MTRVYPHQESTTSSESHNRCLNRSCNKRETYTVWMKSLVLHSNGCTVYDSNGSIVYRVEN 60

Query: 52 YDRKGTREVNLMDLRGKVL 70
          YDRKG REV LM+L+ K+ 
Sbjct: 61 YDRKGGREVTLMNLKRKMF 79


>Medtr8g023060.1 | tubby C 2 protein | HC | chr8:8230795-8229295 |
           20130731
          Length = 199

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 14/158 (8%)

Query: 1   MAKIFPQESTSSECIN--SERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTR 58
           M K+ PQ   SS   N  S++E++TLWMKSLVL+  GCTV+DSNG I YRVDNY+     
Sbjct: 1   MGKVHPQALASSTTCNFTSKQESFTLWMKSLVLNGKGCTVFDSNGQIAYRVDNYNSNHRD 60

Query: 59  EVNLMDLRGKVLCTIKKRLLAIGS-WEGHRYCSNSSYTSQEQPWFQVKRC---NTGKVAC 114
           +V+LMD RG  L TI K+   +   WEG++    ++   Q+ P F+V +    +    + 
Sbjct: 61  QVHLMDQRGNTLFTILKKQYKLSRFWEGYKL--PATRNDQKGPCFRVGKTYSISKWDSSY 118

Query: 115 QIKVGCQK-----YCIVRISGKAAAFKIVTKDGHIVAE 147
           ++++G  K     Y I   + K A  KI+ K+G IVAE
Sbjct: 119 EVELGLDKNQPYNYKIESSTCKPAC-KIMDKNGVIVAE 155


>Medtr2g103840.1 | LURP-one-like protein | HC |
           chr2:44705927-44703600 | 20130731
          Length = 223

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 22  YTLWMKSLVLHSNGCTVYDSNGDIVYRVDNY--DRKGTREVNLMDLRGKVLCTIKKRLLA 79
           YT+   SL    +G TVYDS+G +V+RVD+Y  D +   E+ LMD  G+ L T++++  +
Sbjct: 31  YTVLKTSLFFSGDGFTVYDSHGQLVFRVDSYGPDSRDLDELVLMDPDGRCLLTVRRKRPS 90

Query: 80  IGS-WEGHRYCSNSSYTSQEQPWFQVKR 106
           +   WEG +          ++P F VKR
Sbjct: 91  LHQRWEGFK----GERRDGDKPTFSVKR 114


>Medtr2g103850.1 | LURP-one-like protein | HC |
           chr2:44715912-44713408 | 20130731
          Length = 224

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 15  INSERETYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNY--DRKGTREVNLMDLRGKVLCT 72
           I  E   YT+   +L    +G TVYD NG + +RVD+Y  D +   E+ LMD +G+ L T
Sbjct: 25  IFKEEIHYTVLKTTLFFAGDGFTVYDCNGQVAFRVDSYGPDSRDLHELILMDPQGRCLLT 84

Query: 73  I-KKRLLAIGSWEGHRYCSNSSYTSQEQPWFQVKRCN 108
           + +KR      WEG +          ++P F VKR +
Sbjct: 85  VHRKRPSLHQRWEGFK----GEKMEGDKPTFSVKRSS 117


>Medtr8g099000.1 | tubby C 2 protein | HC | chr8:41518271-41516992 |
           20130731
          Length = 233

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 42/65 (64%), Gaps = 3/65 (4%)

Query: 21  TYTLWMKSLVLHSNGCTVYDSNGDIVYRVDNYDRKGTREVNLMDLRGKVLCTIKK-RLLA 79
           + T+W KSLV++  G TV DS G++VYRVDNY      EV LMD  G  L ++++ R L 
Sbjct: 44  SLTVWKKSLVINCKGFTVIDSCGNLVYRVDNYSLH-PHEVVLMDASGNSLLSMRRQRKLG 102

Query: 80  IG-SW 83
           +G SW
Sbjct: 103 LGDSW 107