Miyakogusa Predicted Gene

Lj4g3v2928710.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2928710.2 tr|A9TN20|A9TN20_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,29.22,9e-18,S1,Ribosomal protein S1, RNA-binding domain;
Nucleic acid-binding proteins,Nucleic acid-binding, OB-,CUFF.51877.2
         (737 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g097290.1 | heat shock transcription factor 8, putative | ...   711   0.0  
Medtr3g084860.1 | S1 RNA-binding domain protein | HC | chr3:3833...    82   3e-15

>Medtr8g097290.1 | heat shock transcription factor 8, putative | HC
           | chr8:40760661-40752107 | 20130731
          Length = 888

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/482 (72%), Positives = 407/482 (84%), Gaps = 1/482 (0%)

Query: 257 ESSDEIGNLTLLEQPHKPISK-KEEQFEDEKVVVPNEGVEQLEQRDLEFHEEPTDLSQLS 315
           E SDE+ NLTLL+QP +   K +EE+F D +VVVP +G EQ +QR  E H+E  DL+Q S
Sbjct: 407 EPSDEVTNLTLLQQPQRAGDKVEEEKFGDVRVVVPIDGSEQQKQRQSEVHQEQFDLNQPS 466

Query: 316 DSNSVGSRTELSVEAALQGKPKRLDQSELQTSNFVGEDATFLPPGGNGDNEELRNLVYTS 375
           D NSVGS+TELSVEAA+QGKPKRLD  E QTS  VGE+   L P    +++E  NLV   
Sbjct: 467 DLNSVGSKTELSVEAAIQGKPKRLDPYEKQTSKSVGEETASLDPESRRNSDESGNLVDVL 526

Query: 376 DLQEIEKADWTRAEALMKTGRKEDVELVSCNTKGFIVSYGSLVGFLPYRNLPSKWKFLAF 435
           D+ E E  DWT+AE L+KTG + DV++VSCN KGF+VS+G+LVGFLPYRNL SKWKFLAF
Sbjct: 527 DILEGEDTDWTKAEDLIKTGDRVDVDVVSCNVKGFVVSFGTLVGFLPYRNLLSKWKFLAF 586

Query: 436 ESWLRQKGLDPSMYKQNLSTITSYEAEKKKLSSDSPPYVEIDGKVEDNISPDMKLEDLLR 495
           ESW+RQKGLDPSMYKQNL T+T+Y+AE    S+DSP ++E DGK+ED ISPDMKLEDLL+
Sbjct: 587 ESWVRQKGLDPSMYKQNLVTVTNYDAENSNFSADSPSHMENDGKLEDKISPDMKLEDLLK 646

Query: 496 IYDQEKINFLSSFIGKKIRANALLADRKMRKLIFSLRPKEKEELVEKKRNLMAKLQVGDI 555
           IYDQEKI FLSSFIG++I+A  LL+DRK+++LIFSL+ KE EEL EKKRNLMA+LQVGDI
Sbjct: 647 IYDQEKIKFLSSFIGQQIKAYVLLSDRKLKRLIFSLKAKENEELTEKKRNLMARLQVGDI 706

Query: 556 VKCRIEKITYFGIFVEVEGVPALIHQSEISWDATLNPTSYFKIGQVVEAKVHQLNFALKR 615
           VKCRI+KITYFGIFVEVEGV ALIHQSEISWD+TL+P++YFKI Q VEAKVHQ+N AL R
Sbjct: 707 VKCRIQKITYFGIFVEVEGVSALIHQSEISWDSTLDPSNYFKIDQAVEAKVHQINSALGR 766

Query: 616 IFLSLKEVMPDPLMNALESVVGGHDPLDGRMEEAQTDAEWPEVESLIVELQKIEGVQSVS 675
           IFLSLKEV PDPLMN+LESVVG H+P DGR+E AQTD EW EVESLI ELQKIEG+QSVS
Sbjct: 767 IFLSLKEVTPDPLMNSLESVVGDHEPFDGRLEAAQTDVEWSEVESLIKELQKIEGIQSVS 826

Query: 676 KGRFFRRPGLATTFQVYMASIFENQYKLLARADNRIQEVMVQSSLDKELMKSAIMTCANR 735
           KGRFFR PGLA TFQVYMASIFENQYKLLAR++N+IQEVMVQ+SLDKE+MKS IMTCANR
Sbjct: 827 KGRFFRSPGLAPTFQVYMASIFENQYKLLARSENKIQEVMVQTSLDKEMMKSIIMTCANR 886

Query: 736 VE 737
           VE
Sbjct: 887 VE 888



 Score =  221 bits (564), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 156/332 (46%), Positives = 190/332 (57%), Gaps = 57/332 (17%)

Query: 1   MGSLHLSAKS-LFTTRTQLPWFSSEXXXXXXXXX----VHLKQRN--KVFAASRSQEEDE 53
           MGSL L++KS  F T TQ P+FSS              V L QR   KVFA+S   E+  
Sbjct: 1   MGSLPLTSKSSFFITTTQFPFFSSSSNTRRRTTTTTTTVFLNQRKNYKVFASSSRDEDKN 60

Query: 54  SPQLNSEDLMELKFARLLGEDPKLTLAKIMGRRANPDVSYLDIEKSFYK-KKGKVVEIEE 112
           +PQL++ DLMELKF RLLGEDPKLTLAK++GR+ANPD SYLDIEKSFYK KKGKVV+IEE
Sbjct: 61  TPQLDNYDLMELKFGRLLGEDPKLTLAKVLGRKANPDASYLDIEKSFYKRKKGKVVDIEE 120

Query: 113 LPFEGSKGRKLSTKLDDLGLVRPVPAKGSTFKPDYNKPALEIKRPVRTESKEGDVRKIGV 172
           LPFE  +              +P P    +     N   +EIK+P +   K  +V K  V
Sbjct: 121 LPFEVER-----------PWAKPKPNSDDS----DNNVEMEIKKPNQALRKPVNVTKSNV 165

Query: 173 PNVALRKPTVYKXXX----XXXFSSRRRMKPNLALKMSSEPVSENFGDMTLLKKPGLPVP 228
           P V LRKP++Y            SSR RMKPN +LKM S  V E F DMTLL+KPG    
Sbjct: 166 PIVILRKPSLYNEDKDGDEDVDMSSRLRMKPNFSLKMQSGQVKEKFSDMTLLRKPG---- 221

Query: 229 KNEAMTQEPSSLLGDQRNNDSELKMWKEESSDEIGNLTLLEQPHKPISKKEEQFEDEKVV 288
                     SL+G  +N +SELK  KEE S E+ NLTLLEQPH+P   KE     EK  
Sbjct: 222 ----------SLIG--KNVESELKTRKEEPSYEVSNLTLLEQPHRPGCNKEV----EKSA 265

Query: 289 VPNEGVEQ---LEQ-------RDLEFHEEPTD 310
            P++ V +   LEQ       ++LE   EP+D
Sbjct: 266 KPSDEVSKLTLLEQPHRPSCNKELEKFAEPSD 297


>Medtr3g084860.1 | S1 RNA-binding domain protein | HC |
           chr3:38332018-38337733 | 20130731
          Length = 399

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 508 FIGKKIRANALLADRKMRKLIFSLRPKEKEELVEKKRNLMAKLQVGDIVKCRIEKITYFG 567
            IG  +    ++ D + RKL+ S    EKE    K       + +GD+ + R+  +  +G
Sbjct: 165 LIGAILSVKVIIVDEEKRKLVLS----EKEASWFKHSK---HINIGDLFEGRVGSVEDYG 217

Query: 568 IFVEVE------GVPALIHQSEISWDATLNPTSYFKIGQVVEAKVHQLNFALKRIFLSLK 621
            FV +        +  LIH SE+SWD   +   + + G+ V  KV  ++    R+ LS+K
Sbjct: 218 AFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLREGEEVRVKVISIDTVKMRLTLSIK 277

Query: 622 EVMPDPLMNALESVV---GGHDPLDGRMEEAQTDAEWPEVESLIVELQKIEGVQSVSKGR 678
           ++  DPL+  L+ V+   G   P       +      P +++++ EL + +G+      R
Sbjct: 278 QLEEDPLLETLDKVIRQDGSGVPNSISSTTSSPIDPLPGLDTILEELLQEDGINEARISR 337

Query: 679 -FFRRPGLATTFQVYMASI--FENQYKLLARADNRIQEVMVQSSLDKELMKSAIMTCANR 735
             F +  ++   Q+++++    + ++ LLARA  ++QE+ +++SLD+E +K AI     R
Sbjct: 338 QGFEKRVVSQDLQLWLSNAPPMDQRFTLLARAGRQVQEIHLKTSLDQEGIKKAIQRVLER 397

Query: 736 V 736
           V
Sbjct: 398 V 398