Miyakogusa Predicted Gene

Lj4g3v2894410.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2894410.1 Non Characterized Hit- tr|I3T9X1|I3T9X1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,52.99,4e-19,coiled-coil,NULL; DUF761,Protein of unknown function
DUF761, plant; PROKAR_LIPOPROTEIN,NULL,CUFF.51844.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g096640.1 | transmembrane protein, putative | HC | chr8:40...   189   2e-48

>Medtr8g096640.1 | transmembrane protein, putative | HC |
           chr8:40540004-40539147 | 20130731
          Length = 210

 Score =  189 bits (480), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/217 (58%), Positives = 157/217 (72%), Gaps = 17/217 (7%)

Query: 1   MDPTQIKKIQAMNRYKRRQVLDNLYFYSFTALACSVFCCVTLCLPYLASMVQVFFMVYMS 60
           MD  QIKKIQAMN+YK+ Q L+NL+FYS TAL CS+FCCVTLCLPYL+S+     +VY+S
Sbjct: 1   MDTNQIKKIQAMNKYKKHQFLENLHFYSLTALICSLFCCVTLCLPYLSSI-----LVYIS 55

Query: 61  SLIQFMLSSKLVFFIGNLIIFVLVVNSRMFSSDPSSTSDVYYDEYIQSSQTHMPQINPTF 120
           SLI  +LSSKL+F + N+II VL++NS++ SSD SS SDVY DEYIQSS T  PQI  +F
Sbjct: 56  SLIPLLLSSKLLFILCNIIIVVLMMNSKILSSDSSSNSDVYLDEYIQSSHTTKPQI-QSF 114

Query: 121 VVNKAKSFENKHVVESVAMAVED--GLNNLDLKARVWVNK------AKEEDNSDGEEEQS 172
            VNK K+FE KHV E++    E   G N + LK  VW+ +      AKE+ + D  +EQS
Sbjct: 115 EVNKTKTFE-KHVEENIMNIFEKHVGHNTITLKRNVWIKETTKTWGAKEDGDLDEGDEQS 173

Query: 173 FHSSY--DELNRRAEDFIARVNRQRKLELSLLQHGSY 207
              ++  DEL+RRAEDFIARVNR RKLELS LQ+G Y
Sbjct: 174 NSVAFRSDELSRRAEDFIARVNRHRKLELSRLQNGCY 210