Miyakogusa Predicted Gene

Lj4g3v2883310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2883310.1 tr|C0Z2G1|C0Z2G1_ARATH AT2G36620 protein
OS=Arabidopsis thaliana GN=AT2G36620 PE=4 SV=1,60,0.17,Glucocorticoid
receptor-like (DNA-binding domain),NULL; Ribosomal_L24e,Ribosomal
protein L24e-relate,CUFF.51846.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC | chr1:269377...   236   7e-63
Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC | chr7:417846...   232   1e-61
Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC | chr7:417846...   232   1e-61
Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC | chr7:417846...   232   1e-61
Medtr4g104930.1 | 60S ribosomal protein L24-2 | HC | chr4:434739...    87   1e-17
Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC | ...    75   3e-14
Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC | ...    65   3e-11

>Medtr1g061670.1 | 60S ribosomal protein L24-2 | HC |
           chr1:26937773-26935483 | 20130731
          Length = 163

 Score =  236 bits (602), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 121/147 (82%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALXXXXXXXX 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAAL        
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERVK 120

Query: 121 XXXXXXXXXXXXXXXXSQKSQGKGNVS 147
                           +QKS GKGNVS
Sbjct: 121 KTKDEKKAKKAESQAKAQKSVGKGNVS 147


>Medtr7g103320.2 | 60S ribosomal protein L24-2 | HC |
           chr7:41784638-41791034 | 20130731
          Length = 163

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALXXXXXXXX 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL        
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 XXXXXXXXXXXXXXXXSQKSQGKGNV 146
                           +QKS GKGNV
Sbjct: 121 KTKDEKKAKKAEVASKAQKS-GKGNV 145


>Medtr7g103320.1 | 60S ribosomal protein L24-2 | HC |
           chr7:41784638-41791010 | 20130731
          Length = 163

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALXXXXXXXX 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL        
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 XXXXXXXXXXXXXXXXSQKSQGKGNV 146
                           +QKS GKGNV
Sbjct: 121 KTKDEKKAKKAEVASKAQKS-GKGNV 145


>Medtr7g103320.3 | 60S ribosomal protein L24-2 | HC |
           chr7:41784600-41786598 | 20130731
          Length = 163

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 118/146 (80%), Positives = 120/146 (82%), Gaps = 1/146 (0%)

Query: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCK YFHN+LKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKRYFHNKLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALXXXXXXXX 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAAL        
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 XXXXXXXXXXXXXXXXSQKSQGKGNV 146
                           +QKS GKGNV
Sbjct: 121 KTKDEKKAKKAEVASKAQKS-GKGNV 145


>Medtr4g104930.1 | 60S ribosomal protein L24-2 | HC |
          chr4:43473926-43474255 | 20130731
          Length = 65

 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 47/54 (87%), Gaps = 1/54 (1%)

Query: 43 HNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKK 96
          H +++ SK TWTAMYRKQHK DIAQE V KR RATKKPYSRSIVGATLE+IQKK
Sbjct: 13 HQQVEASKFTWTAMYRKQHK-DIAQEVVAKRHRATKKPYSRSIVGATLELIQKK 65


>Medtr4g055270.1 | ribosome biogenesis RLP24-like protein | HC |
          chr4:20110107-20107324 | 20130731
          Length = 162

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 2/95 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHK 62
          ++ E C F  + +YPG GI+F+R+D+++F F  SKC   F  +  P K+ WT  YR+ H 
Sbjct: 1  MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRVHG 60

Query: 63 KDIAQEAVKKRRRATKKP--YSRSIVGATLEVIQK 95
          KD+ Q++  +  R   +P  Y R++    L+ I K
Sbjct: 61 KDMTQDSTFEFERKRNRPERYDRNLTEEVLKAIPK 95


>Medtr2g084925.1 | ribosome biogenesis RLP24-like protein | HC |
          chr2:36043720-36045454 | 20130731
          Length = 161

 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 2/93 (2%)

Query: 3  LKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHK 62
          ++ E C F  + +YPG GI+F+R+ +++F F  SKC   F  +  P K+ WT  YR+ H 
Sbjct: 1  MRLEKCWFCSSTVYPGHGIQFVRNVAKIFRFCRSKCHKNFEMKRNPRKVKWTKAYRRVHV 60

Query: 63 KDIAQEAVKKRRRATKKP--YSRSIVGATLEVI 93
          K + Q++  +  R   +P  Y R +    L+ I
Sbjct: 61 KAMTQDSTFECERKRNRPERYDRILNENVLKAI 93