Miyakogusa Predicted Gene
- Lj4g3v2882100.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2882100.2 tr|G7LI47|G7LI47_MEDTR Poly(A) polymerase
OS=Medicago truncatula GN=MTR_8g099900 PE=3
SV=1,76.99,0,POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN,NULL;
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERA,CUFF.51815.2
(519 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g099900.1 | tRNA nucleotidyltransferase/poly(A) polymerase... 784 0.0
Medtr8g099900.2 | tRNA nucleotidyltransferase/poly(A) polymerase... 709 0.0
Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase... 672 0.0
Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase... 655 0.0
Medtr8g099900.3 | tRNA nucleotidyltransferase/poly(A) polymerase... 474 e-134
Medtr5g023810.1 | tRNA nucleotidyltransferase/poly(A) polymerase... 276 2e-74
>Medtr8g099900.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr8:40297677-40291464 | 20130731
Length = 516
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/510 (74%), Positives = 414/510 (81%), Gaps = 1/510 (0%)
Query: 6 TTLKFVCKPNL-HLRIAPFQCVRKVVPRSVPPAEAEECSGGSIREQENKKTPAWKKLNSK 64
+TLK VCKPNL HLR P QCVRKVVPRSVP E EEC+ S +Q NKK PAWKK+NSK
Sbjct: 4 STLKLVCKPNLLHLRPIPSQCVRKVVPRSVPSVEPEECNRSSNLKQVNKKAPAWKKMNSK 63
Query: 65 ELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMRS 124
ELG RNSMIA P K+VL+ LKKKGY+VYLVGGCVRD+IL+QTPKDFDILTSADLKEVMR+
Sbjct: 64 ELGFRNSMIASPIKKVLNMLKKKGYNVYLVGGCVRDMILRQTPKDFDILTSADLKEVMRT 123
Query: 125 FSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKNC 184
FSWCEIVGKRFPICHVHMDG +VEVSSFNT K KP F HDIEAP G D ED+LRW+NC
Sbjct: 124 FSWCEIVGKRFPICHVHMDGIIVEVSSFNTAKRKPGRHFAHDIEAPKGFDKEDYLRWRNC 183
Query: 185 LNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCXXXXXXXXXXXX 244
+NRDFTING MFDP+AKIVYDYMGGMEDI+KAKVRT+VPAATSFQEDC
Sbjct: 184 VNRDFTINGFMFDPFAKIVYDYMGGMEDIIKAKVRTMVPAATSFQEDCARILRAIRIAAR 243
Query: 245 XGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPF 304
GFSIS ETA SVK+LSYSILRLDKGRL+MEMNYMLAYGS EASLRLLW+FGLLDILLPF
Sbjct: 244 LGFSISTETARSVKHLSYSILRLDKGRLLMEMNYMLAYGSGEASLRLLWKFGLLDILLPF 303
Query: 305 QAVYFVHHRFRRRDKRTNMXXXXXXXXXXXXAPNRPCHSSLWVGILALHKTLSDQPRNPL 364
QA+YFV H FRRRDKRTNM APN PCHSSLWVGILALHK+LSDQPRNPL
Sbjct: 304 QALYFVRHGFRRRDKRTNMLLSLFFNLDKLLAPNSPCHSSLWVGILALHKSLSDQPRNPL 363
Query: 365 VVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPXXXXXXXXXXXXXXXXXXXXXXSVKE 424
V+AAFSLAVHNGGNLLEAVDI+RRIN+PHD RFP SVK
Sbjct: 364 VIAAFSLAVHNGGNLLEAVDIARRINKPHDIRFPELSDPCDLNAKALENEILDLVESVKV 423
Query: 425 SLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQDRKT 484
SLLQMT+RH V++AM DYPQAPHSDMVFIPLGMYLK +SIFDCL+ + +KFLSK+ RK
Sbjct: 424 SLLQMTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKKSRKI 483
Query: 485 DYESLAHGDLQEVRHMLAMVVFDTIYPLHL 514
DYESLA GDL E+RH+ A VVFDT+YPLHL
Sbjct: 484 DYESLARGDLPEIRHLFARVVFDTVYPLHL 513
>Medtr8g099900.2 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr8:40297676-40291578 | 20130731
Length = 457
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/454 (74%), Positives = 372/454 (81%)
Query: 61 LNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKE 120
+NSKELG RNSMIA P K+VL+ LKKKGY+VYLVGGCVRD+IL+QTPKDFDILTSADLKE
Sbjct: 1 MNSKELGFRNSMIASPIKKVLNMLKKKGYNVYLVGGCVRDMILRQTPKDFDILTSADLKE 60
Query: 121 VMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLR 180
VMR+FSWCEIVGKRFPICHVHMDG +VEVSSFNT K KP F HDIEAP G D ED+LR
Sbjct: 61 VMRTFSWCEIVGKRFPICHVHMDGIIVEVSSFNTAKRKPGRHFAHDIEAPKGFDKEDYLR 120
Query: 181 WKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCXXXXXXXX 240
W+NC+NRDFTING MFDP+AKIVYDYMGGMEDI+KAKVRT+VPAATSFQEDC
Sbjct: 121 WRNCVNRDFTINGFMFDPFAKIVYDYMGGMEDIIKAKVRTMVPAATSFQEDCARILRAIR 180
Query: 241 XXXXXGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDI 300
GFSIS ETA SVK+LSYSILRLDKGRL+MEMNYMLAYGS EASLRLLW+FGLLDI
Sbjct: 181 IAARLGFSISTETARSVKHLSYSILRLDKGRLLMEMNYMLAYGSGEASLRLLWKFGLLDI 240
Query: 301 LLPFQAVYFVHHRFRRRDKRTNMXXXXXXXXXXXXAPNRPCHSSLWVGILALHKTLSDQP 360
LLPFQA+YFV H FRRRDKRTNM APN PCHSSLWVGILALHK+LSDQP
Sbjct: 241 LLPFQALYFVRHGFRRRDKRTNMLLSLFFNLDKLLAPNSPCHSSLWVGILALHKSLSDQP 300
Query: 361 RNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPXXXXXXXXXXXXXXXXXXXXXX 420
RNPLV+AAFSLAVHNGGNLLEAVDI+RRIN+PHD RFP
Sbjct: 301 RNPLVIAAFSLAVHNGGNLLEAVDIARRINKPHDIRFPELSDPCDLNAKALENEILDLVE 360
Query: 421 SVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQ 480
SVK SLLQMT+RH V++AM DYPQAPHSDMVFIPLGMYLK +SIFDCL+ + +KFLSK+
Sbjct: 361 SVKVSLLQMTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKK 420
Query: 481 DRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHL 514
RK DYESLA GDL E+RH+ A VVFDT+YPLHL
Sbjct: 421 SRKIDYESLARGDLPEIRHLFARVVFDTVYPLHL 454
>Medtr3g498785.2 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr3:45158441-45152448 | 20130731
Length = 530
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/516 (62%), Positives = 387/516 (75%), Gaps = 5/516 (0%)
Query: 8 LKFVCKPNLHLRIAPFQCVRK--VVPRSVPPAEAEECSGG--SIREQENKKTPAWKKLNS 63
KFV + LHLR PFQ +RK +V + +E SGG SIRE+ N+K+PAWKK+ +
Sbjct: 6 FKFVRQSTLHLRPTPFQYLRKKSIVAVNASETSTDENSGGGVSIREEGNEKSPAWKKIGT 65
Query: 64 KELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSADLKEVMR 123
KELG+ NS I ++VL+ LKK+GYDVYLVGGCVRDLILKQTPKDFDI+TSA+LKEVM+
Sbjct: 66 KELGIHNSSIGPAARKVLNGLKKRGYDVYLVGGCVRDLILKQTPKDFDIITSAELKEVMK 125
Query: 124 SFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRTRFVHDIEAPNGCDNEDFLRWKN 183
FSWC+IVGKRFPICHVHMD T+VEVSSFNT + K H +APN C+ +D LRWKN
Sbjct: 126 VFSWCKIVGKRFPICHVHMDDTIVEVSSFNTARGKKGVESSHHTKAPNSCE-KDLLRWKN 184
Query: 184 CLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCXXXXXXXXXXX 243
CLNRDFTINGL+ DPY ++VYDYMGG+EDI KAKVRT+ PA SF+EDC
Sbjct: 185 CLNRDFTINGLILDPYERVVYDYMGGIEDIRKAKVRTINPADISFREDCARILRAIRIAA 244
Query: 244 XXGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLP 303
GFSIS+ETAH +KNLS S+LRLDKGRL+ME+NYMLAYGS EASLRLLW+FGLLDILLP
Sbjct: 245 RLGFSISKETAHFIKNLSSSVLRLDKGRLLMEINYMLAYGSGEASLRLLWKFGLLDILLP 304
Query: 304 FQAVYFVHHRFRRRDKRTNMXXXXXXXXXXXXAPNRPCHSSLWVGILALHKTLSDQPRNP 363
FQA YF HH FRRRDKRTNM APNRPC+ SLW ILALHK LSD+PR+P
Sbjct: 305 FQAAYFAHHGFRRRDKRTNMLLSLFSNLDKLLAPNRPCYGSLWFAILALHKALSDRPRDP 364
Query: 364 LVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPXXXXXXXXXXXXXXXXXXXXXXSVK 423
LVVAAFSLAVHNGGNLLEAV+I+ IN+ HD RFP S++
Sbjct: 365 LVVAAFSLAVHNGGNLLEAVNIAGMINKAHDMRFPELLDPSGMDAKALEAGVRDLAESIR 424
Query: 424 ESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQDRK 483
+LLQMT H VSQAMADYPQAPHSD+VFIPL +Y+K +IF+C++ A ++ LSKQ K
Sbjct: 425 GTLLQMTDEHFVSQAMADYPQAPHSDLVFIPLELYVKVFNIFECVKRSAVKRSLSKQGMK 484
Query: 484 TDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRDQS 519
DYESLA+GD+QE+RH+ A +VFDT++PLH +DQ+
Sbjct: 485 IDYESLANGDIQEIRHVFARIVFDTVFPLHQYQDQA 520
>Medtr3g498785.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr3:45158396-45153028 | 20130731
Length = 552
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/538 (59%), Positives = 382/538 (71%), Gaps = 27/538 (5%)
Query: 8 LKFVCKPNLHLRIAPFQCVRKV--------------------------VPRSVPPAEAEE 41
KFV + LHLR PFQ +RKV V +S+ A E
Sbjct: 6 FKFVRQSTLHLRPTPFQYLRKVPILTHLHLHFTLSRFFPNSIIHFIKAVQKSIVAVNASE 65
Query: 42 CSGGSIREQENKKTPAWKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDL 101
S N+K+PAWKK+ +KELG+ NS I ++VL+ LKK+GYDVYLVGGCVRDL
Sbjct: 66 TSTDENSGGGNEKSPAWKKIGTKELGIHNSSIGPAARKVLNGLKKRGYDVYLVGGCVRDL 125
Query: 102 ILKQTPKDFDILTSADLKEVMRSFSWCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRT 161
ILKQTPKDFDI+TSA+LKEVM+ FSWC+IVGKRFPICHVHMD T+VEVSSFNT + K
Sbjct: 126 ILKQTPKDFDIITSAELKEVMKVFSWCKIVGKRFPICHVHMDDTIVEVSSFNTARGKKGV 185
Query: 162 RFVHDIEAPNGCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTV 221
H +APN C+ +D LRWKNCLNRDFTINGL+ DPY ++VYDYMGG+EDI KAKVRT+
Sbjct: 186 ESSHHTKAPNSCE-KDLLRWKNCLNRDFTINGLILDPYERVVYDYMGGIEDIRKAKVRTI 244
Query: 222 VPAATSFQEDCXXXXXXXXXXXXXGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLA 281
PA SF+EDC GFSIS+ETAH +KNLS S+LRLDKGRL+ME+NYMLA
Sbjct: 245 NPADISFREDCARILRAIRIAARLGFSISKETAHFIKNLSSSVLRLDKGRLLMEINYMLA 304
Query: 282 YGSAEASLRLLWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMXXXXXXXXXXXXAPNRPC 341
YGS EASLRLLW+FGLLDILLPFQA YF HH FRRRDKRTNM APNRPC
Sbjct: 305 YGSGEASLRLLWKFGLLDILLPFQAAYFAHHGFRRRDKRTNMLLSLFSNLDKLLAPNRPC 364
Query: 342 HSSLWVGILALHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPXXX 401
+ SLW ILALHK LSD+PR+PLVVAAFSLAVHNGGNLLEAV+I+ IN+ HD RFP
Sbjct: 365 YGSLWFAILALHKALSDRPRDPLVVAAFSLAVHNGGNLLEAVNIAGMINKAHDMRFPELL 424
Query: 402 XXXXXXXXXXXXXXXXXXXSVKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKT 461
S++ +LLQMT H VSQAMADYPQAPHSD+VFIPL +Y+K
Sbjct: 425 DPSGMDAKALEAGVRDLAESIRGTLLQMTDEHFVSQAMADYPQAPHSDLVFIPLELYVKV 484
Query: 462 VSIFDCLRARAGRKFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTIYPLHLDRDQS 519
+IF+C++ A ++ LSKQ K DYESLA+GD+QE+RH+ A +VFDT++PLH +DQ+
Sbjct: 485 FNIFECVKRSAVKRSLSKQGMKIDYESLANGDIQEIRHVFARIVFDTVFPLHQYQDQA 542
>Medtr8g099900.3 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr8:40295437-40291464 | 20130731
Length = 323
Score = 474 bits (1221), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/320 (72%), Positives = 253/320 (79%)
Query: 195 MFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQEDCXXXXXXXXXXXXXGFSISRETA 254
MFDP+AKIVYDYMGGMEDI+KAKVRT+VPAATSFQEDC GFSIS ETA
Sbjct: 1 MFDPFAKIVYDYMGGMEDIIKAKVRTMVPAATSFQEDCARILRAIRIAARLGFSISTETA 60
Query: 255 HSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRLLWRFGLLDILLPFQAVYFVHHRF 314
SVK+LSYSILRLDKGRL+MEMNYMLAYGS EASLRLLW+FGLLDILLPFQA+YFV H F
Sbjct: 61 RSVKHLSYSILRLDKGRLLMEMNYMLAYGSGEASLRLLWKFGLLDILLPFQALYFVRHGF 120
Query: 315 RRRDKRTNMXXXXXXXXXXXXAPNRPCHSSLWVGILALHKTLSDQPRNPLVVAAFSLAVH 374
RRRDKRTNM APN PCHSSLWVGILALHK+LSDQPRNPLV+AAFSLAVH
Sbjct: 121 RRRDKRTNMLLSLFFNLDKLLAPNSPCHSSLWVGILALHKSLSDQPRNPLVIAAFSLAVH 180
Query: 375 NGGNLLEAVDISRRINQPHDDRFPXXXXXXXXXXXXXXXXXXXXXXSVKESLLQMTTRHM 434
NGGNLLEAVDI+RRIN+PHD RFP SVK SLLQMT+RH
Sbjct: 181 NGGNLLEAVDIARRINKPHDIRFPELSDPCDLNAKALENEILDLVESVKVSLLQMTSRHS 240
Query: 435 VSQAMADYPQAPHSDMVFIPLGMYLKTVSIFDCLRARAGRKFLSKQDRKTDYESLAHGDL 494
V++AM DYPQAPHSDMVFIPLGMYLK +SIFDCL+ + +KFLSK+ RK DYESLA GDL
Sbjct: 241 VARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLSKKSRKIDYESLARGDL 300
Query: 495 QEVRHMLAMVVFDTIYPLHL 514
E+RH+ A VVFDT+YPLHL
Sbjct: 301 PEIRHLFARVVFDTVYPLHL 320
>Medtr5g023810.1 | tRNA nucleotidyltransferase/poly(A) polymerase |
HC | chr5:9485108-9478063 | 20130731
Length = 713
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 164/460 (35%), Positives = 241/460 (52%), Gaps = 10/460 (2%)
Query: 58 WKKLNSKELGLRNSMIAHPTKRVLSTLKKKGYDVYLVGGCVRDLILKQTPKDFDILTSAD 117
WK ++ +LG+ SMI+ P+ VL L+ KG YLVGGCVRDL+L +TPKDFD++T+A
Sbjct: 59 WKTFDAWKLGVTGSMISKPSHFVLKLLQDKGLKSYLVGGCVRDLVLNRTPKDFDVVTTAK 118
Query: 118 LKEVMRSFS----WCEIVGKRFPICHVHMDGTVVEVSSFNTNKFKPRT--RFVHDIEAPN 171
L EV R F ++VG+RFP+C VHM G+V+EV+SF+T P+ +H + P
Sbjct: 119 LIEVKRLFRRFGHRADVVGRRFPVCLVHMQGSVIEVTSFHTESETPKAMKNVLHSL-MPK 177
Query: 172 GCDNEDFLRWKNCLNRDFTINGLMFDPYAKIVYDYMGGMEDIVKAKVRTVVPAATSFQED 231
+ E+ KN L RDFTIN L +DP+A +YDY GM D+ K+ TV+PA SF+ED
Sbjct: 178 CKNKENRFLCKNSLRRDFTINSLFYDPFANKIYDYANGMADLRSLKLETVIPAQISFKED 237
Query: 232 CXXXXXXXXXXXXXGFSISRETAHSVKNLSYSILRLDKGRLMMEMNYMLAYGSAEASLRL 291
G S+SRE ++ S + L+K R+M+EMNYML+YG+AE SLRL
Sbjct: 238 PGRILRGFRIAARLGLSLSREIEAAIWTCSSLVEDLNKDRMMIEMNYMLSYGAAEPSLRL 297
Query: 292 LWRFGLLDILLPFQAVYFVHHRFRRRDKRTNMXXXXXXXXXXXXAPNRPCHSSLWVGILA 351
LW+F LL LLP QA Y + + +NM RP +LW+G+LA
Sbjct: 298 LWKFKLLQFLLPVQAAYLDEQATKEDAQDSNMLMKLFFHMDNLVGCGRPSDCTLWIGLLA 357
Query: 352 LHKTLSDQPRNPLVVAAFSLAVHNGGNLLEAVDISRRINQPHDDRFPXXXXXXXXXXXXX 411
H L + P++ LVV AF+ +++ G+ + ++ + + P
Sbjct: 358 FHLALVNNPQDALVVWAFASVLYH-GDWEGGIKFAKEHAKMSVNFEPEIKRSSICKSDED 416
Query: 412 XXXXXXXXXS-VKESLLQMTTRHMVSQAMADYPQAPHSDMVFIPLGMYLKTVS-IFDCLR 469
S V +S+ + +SQ+++ YP P MV + K VS IF+ L
Sbjct: 417 IAEAVTKLASLVIDSIHPLVNIESLSQSLSRYPSVPPPHMVLVVSKKTGKAVSEIFEVLV 476
Query: 470 ARAGRKFLSKQDRKTDYESLAHGDLQEVRHMLAMVVFDTI 509
++ K +Y+ L G E R +L +V T+
Sbjct: 477 NDIKFYKSERKSAKINYDMLGSGHTSETRFVLGKIVLQTM 516