Miyakogusa Predicted Gene

Lj4g3v2871730.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2871730.2 Non Characterized Hit- tr|E1Z3R4|E1Z3R4_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,47.44,0.0000000006,no description,Rubredoxin-type fold;
Rubredoxin,Rubredoxin domain; seg,NULL; Rubredoxin-like,NULL;
R,CUFF.51796.2
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g098520.1 | electron transporter | HC | chr3:44983969-4498...   174   2e-44
Medtr3g098520.2 | electron transporter | HC | chr3:44983969-4498...    94   5e-20
Medtr5g008050.1 | rubredoxin family protein | HC | chr5:1646673-...    47   6e-06

>Medtr3g098520.1 | electron transporter | HC |
           chr3:44983969-44982538 | 20130731
          Length = 159

 Score =  174 bits (442), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 106/161 (65%), Gaps = 2/161 (1%)

Query: 1   MALQMQSPXXXXXXXXXXXXXXGLRRSFNPLALKSPFFSGSLNLYLHPNHQQLLTSVAPR 60
           MALQ+Q+                LR   NP  LK+ FFS SLNL LHPN  QL     PR
Sbjct: 1   MALQVQASLYTTRLSPTATPTL-LRPLSNPSTLKTSFFSRSLNLLLHPNQLQLAYG-PPR 58

Query: 61  ISMRVASKQSYICRDCGYIYSDRIPFEKLPDNYFCRVCGAPKRRFKPYAPPVTKNANDID 120
            +MRVASKQ+YICRDCGYIY++R  F+KLPD YFC VCGAPKRRFKPYA  V K AN+ D
Sbjct: 59  FTMRVASKQAYICRDCGYIYNERTAFDKLPDKYFCPVCGAPKRRFKPYATDVNKKANETD 118

Query: 121 VRKARKAELQRDQAIGRALPXXXXXXXXXXXXXYFYLNSVY 161
           VRKARKAELQRD+A+G+ALP             YFYLNS +
Sbjct: 119 VRKARKAELQRDEAVGKALPIAVAVGVVVLAGLYFYLNSTF 159


>Medtr3g098520.2 | electron transporter | HC |
          chr3:44983969-44983265 | 20130731
          Length = 122

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 60/95 (63%), Gaps = 2/95 (2%)

Query: 1  MALQMQSPXXXXXXXXXXXXXXGLRRSFNPLALKSPFFSGSLNLYLHPNHQQLLTSVAPR 60
          MALQ+Q+                LR   NP  LK+ FFS SLNL LHPN  QL     PR
Sbjct: 1  MALQVQASLYTTRLSPTATPTL-LRPLSNPSTLKTSFFSRSLNLLLHPNQLQLAYG-PPR 58

Query: 61 ISMRVASKQSYICRDCGYIYSDRIPFEKLPDNYFC 95
           +MRVASKQ+YICRDCGYIY++R  F+KLPD YFC
Sbjct: 59 FTMRVASKQAYICRDCGYIYNERTAFDKLPDKYFC 93


>Medtr5g008050.1 | rubredoxin family protein | HC |
           chr5:1646673-1649325 | 20130731
          Length = 273

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 59  PRISMRVASKQ----SYICRDCGYIYSDRIPFEKLPDNYFCRVCGAPKRRFKPY 108
           PR   ++   Q    ++IC DCGYIY     F+  PD Y C  C APK+RF  Y
Sbjct: 182 PRFGRKLTETQKARATHICLDCGYIYFLPKSFDDQPDTYSCPQCQAPKKRFAEY 235