Miyakogusa Predicted Gene

Lj4g3v2860600.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2860600.2 tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA
phosphodiesterase OS=Medicago truncatula GN=MTR_8g095490 PE=4
SV=,77.02,0,seg,NULL; Tyr-DNA_phospho,Tyrosyl-DNA phosphodiesterase;
HIRAN,HIP116, Rad5p N-terminal; coiled-coil,CUFF.51784.2
         (770 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g095490.1 | tyrosyl-DNA phosphodiesterase | HC | chr8:3996...  1149   0.0  
Medtr7g050860.1 | tyrosyl-DNA phosphodiesterase | HC | chr7:1775...    57   6e-08

>Medtr8g095490.1 | tyrosyl-DNA phosphodiesterase | HC |
            chr8:39969676-39961395 | 20130731
          Length = 1064

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/779 (72%), Positives = 626/779 (80%), Gaps = 10/779 (1%)

Query: 1    MLCESKVMDLEAKSEHFGGRGNAGVACVSAMDDNNHDAALRDSVAKDSLPSCGA------ 54
            +LC+SK +DLE   E+F  +G+ GV  V+A  D N +  + DS+ KD++ S         
Sbjct: 287  LLCKSKGIDLEENGENFCRKGDLGVDYVNAFGDKNLNLTVSDSIEKDNVSSDSDNEQGTN 346

Query: 55   ---FHPPPGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVESISRMFIATFTSDIKWFL 111
               F+PPPGKNFYLNRLE M+              ELI+P+ES++RMFIATFTSDI WFL
Sbjct: 347  QHDFYPPPGKNFYLNRLEYMNHDSSSGLDNSISLTELIHPIESVTRMFIATFTSDITWFL 406

Query: 112  TYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPFPETIAFGNNRKKQ 171
            TYCKIP+HLPVTIAC NTE+CWSS+PDER FVPYQ+YPNLVVV PPFPETIAFG + K+ 
Sbjct: 407  TYCKIPYHLPVTIACQNTEKCWSSKPDERVFVPYQNYPNLVVVHPPFPETIAFGKDHKRH 466

Query: 172  GIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRGNSVDFASLFPKID 231
            GIACHHPKLIV+QREDSIRV+ITSANLVEKQWN VTNTIWWQDFPR   VD+ASLF KID
Sbjct: 467  GIACHHPKLIVLQREDSIRVIITSANLVEKQWNSVTNTIWWQDFPRAILVDYASLFRKID 526

Query: 232  DGEIHSDSKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGIHFYR 291
            D E+H +SKCDFAAQLAGFMASLVIDVPSQA WITQLTKYDF  ATGHLVAS+PGIH  R
Sbjct: 527  DDEVHRNSKCDFAAQLAGFMASLVIDVPSQAHWITQLTKYDFGSATGHLVASLPGIHLNR 586

Query: 292  TSVLLESFQTSPFXXXXXXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIV 351
            TSVLLESFQ+S F            HLFR VADSNSA L+ LA  L K C+  NG  EIV
Sbjct: 587  TSVLLESFQSSSFLGSVVASVVGLSHLFRAVADSNSAGLRALAAVLGKYCKNVNGRFEIV 646

Query: 352  LRRNSSVPADKNAVSVLIPNPDETSEGDYVQLGFLPRDVAKWISPLWDAGFFIFSGCVCP 411
            LRRN +VPAD+NAVSVL+P  D+TSEGD+VQLGFLPR++AKW+SPLWDAGFF FSG VCP
Sbjct: 647  LRRNHNVPADENAVSVLVPKSDQTSEGDFVQLGFLPRNLAKWVSPLWDAGFFSFSGYVCP 706

Query: 412  VEALAAALGENSKKVQLILNVSEGPHFQDMPKMMQSEQIVAFCSLIASIQRCYGLWRLQE 471
             EALAAALGENS+K+QLILNVSEG HF+DM KMMQSEQI AFCSLIASIQR YGLWRLQE
Sbjct: 707  KEALAAALGENSQKLQLILNVSEGHHFRDMSKMMQSEQIAAFCSLIASIQRHYGLWRLQE 766

Query: 472  VLNRYRWPESLESEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNA 531
            VLN+YRWPESLESEI+YGASSIG SVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNA
Sbjct: 767  VLNQYRWPESLESEIVYGASSIG-SVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNA 825

Query: 532  NEELKNPSVWIIFPTIERVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERI 591
             EELKNPSV IIFPTIERVK+AYNGILPSRR+LCF+ERTWQRLKT DVL DA+PHP ER+
Sbjct: 826  REELKNPSVKIIFPTIERVKSAYNGILPSRRILCFSERTWQRLKTLDVLHDAVPHPHERV 885

Query: 592  GHPMHTKVIRRCFWSKGDAPSIGWVYCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVN 651
            GHPMHTKV+RRCFWS+G+APSIGWVYCGSHNFSAAAWGRQISNPFGTKA +P K DPSVN
Sbjct: 886  GHPMHTKVVRRCFWSRGEAPSIGWVYCGSHNFSAAAWGRQISNPFGTKADDPHKGDPSVN 945

Query: 652  SGLHICNYELGIIFTFPPIENNYCSEVQRTKLDDIILPFVVPAPKYGFRDRPATMQAMRE 711
            SGLHICNYELGIIFTFPP ENN C +V+ TKLDDI+LP+VVPAPKYG  D+PAT  AMRE
Sbjct: 946  SGLHICNYELGIIFTFPPSENNECPKVKSTKLDDIVLPYVVPAPKYGSLDKPATKLAMRE 1005

Query: 712  AMXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNNVGXXXXXXKAYAEILWSQVDSSQSS 770
             M                              N VG      KAYAEILWSQVDSSQ+S
Sbjct: 1006 VMTELAEREGEKQAEEEIMEEILEEEEEIEEINCVGEEKEEEKAYAEILWSQVDSSQNS 1064


>Medtr7g050860.1 | tyrosyl-DNA phosphodiesterase | HC |
           chr7:17758152-17770806 | 20130731
          Length = 634

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 37/196 (18%)

Query: 100 IATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYP-NLVVVCPPF 158
           ++ +  D+ W +  C     +P  +  H          DER     +  P N ++  PP 
Sbjct: 202 LSNYMVDVDWLVPACPALSKVPHVLVLHGES-------DERVACIKRSKPKNWILHKPPL 254

Query: 159 PETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFP-- 216
           P  I+FG          HH K + +     +RV+I +ANL+   WN  +  +W QDFP  
Sbjct: 255 P--ISFG---------THHSKAMFLVYPRGVRVIIHTANLIYVDWNNKSQGLWMQDFPWK 303

Query: 217 RGNSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFM-ASLVIDVPSQAQWI---TQLTKYD 272
             NS    S F            + D    L+        +++PS   +    +   K+D
Sbjct: 304 DQNSPSKGSRF------------ENDLVEYLSALKWPEFSVNLPSLGNFSICPSFFKKFD 351

Query: 273 FEGATGHLVASVPGIH 288
           +  A   L+ASVPG H
Sbjct: 352 YSDAMVRLIASVPGYH 367