Miyakogusa Predicted Gene
- Lj4g3v2827890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v2827890.1 tr|A9SFF6|A9SFF6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,38.32,0.0000001,RINGv,Zinc finger, RING-CH-type;
RING/U-box,NULL; no description,Zinc finger, RING/FYVE/PHD-type;
Th,CUFF.51740.1
(357 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g094610.1 | RING/FYVE/PHD zinc finger protein | HC | chr8:... 471 e-133
Medtr3g069760.1 | RING-variant domain protein | LC | chr3:312467... 57 3e-08
Medtr5g081560.1 | RING/FYVE/PHD zinc finger protein | HC | chr5:... 54 3e-07
Medtr3g069730.1 | RING/FYVE/PHD zinc finger protein | HC | chr3:... 53 5e-07
Medtr2g016520.1 | RING/FYVE/PHD zinc finger protein | HC | chr2:... 51 2e-06
Medtr2g020520.1 | zinc finger protein | HC | chr2:6842371-683628... 50 3e-06
Medtr2g020520.4 | zinc finger protein | HC | chr2:6841935-683628... 50 3e-06
Medtr2g094130.2 | RING/U-box protein | HC | chr2:40144316-401482... 50 5e-06
Medtr2g094130.1 | RING/U-box protein | HC | chr2:40144316-401482... 50 5e-06
Medtr2g020520.2 | zinc finger protein | HC | chr2:6842446-683628... 50 5e-06
Medtr2g020520.3 | zinc finger protein | HC | chr2:6842068-683628... 50 5e-06
Medtr8g086550.2 | RING/FYVE/PHD zinc finger protein | HC | chr8:... 49 5e-06
Medtr8g086550.1 | RING/FYVE/PHD zinc finger protein | HC | chr8:... 49 5e-06
Medtr4g086500.1 | RINGv domain protein | HC | chr4:33910665-3391... 49 6e-06
Medtr7g065920.1 | RING/FYVE/PHD zinc finger protein | HC | chr7:... 49 7e-06
Medtr3g081490.4 | zinc finger protein | HC | chr3:36898911-36894... 49 7e-06
Medtr3g081490.2 | zinc finger protein | HC | chr3:36898911-36894... 49 7e-06
Medtr3g081490.3 | zinc finger protein | HC | chr3:36898911-36894... 49 7e-06
Medtr3g081490.1 | zinc finger protein | HC | chr3:36898911-36894... 49 7e-06
Medtr2g094130.3 | RING/U-box protein | HC | chr2:40144316-401482... 49 8e-06
Medtr2g094130.4 | RING/U-box protein | HC | chr2:40144316-401482... 49 8e-06
>Medtr8g094610.1 | RING/FYVE/PHD zinc finger protein | HC |
chr8:39512152-39507362 | 20130731
Length = 358
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 237/358 (66%), Positives = 265/358 (74%), Gaps = 4/358 (1%)
Query: 3 GGENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALE 62
G EN S + KE++ ++ SS+VE DLES SRLSLE+E+ L SCRVCQCAESDKRGDAALE
Sbjct: 2 GKENESPVKKEEVSDDGSSNVEMRDLESQSRLSLEREMGLASCRVCQCAESDKRGDAALE 61
Query: 63 FLGIIPVLESKGEEVGSDGVGIAKDN---RNVENESRVVEFVSPDGEVFVCKSDLELGLS 119
FLGI PV+ESKGE V DG I KD +N E + ++EFV P+GEVFVCK+DLE+GLS
Sbjct: 62 FLGITPVIESKGE-VKLDGKEIPKDTTPKKNFECKPGMMEFVGPNGEVFVCKNDLEIGLS 120
Query: 120 HQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKE 179
H+D L+ELGCCCKNDLALVHYACALKWFINHGSTICEICGHIA+NIRI+D NKV+ SLKE
Sbjct: 121 HEDRLIELGCCCKNDLALVHYACALKWFINHGSTICEICGHIANNIRIADFNKVIGSLKE 180
Query: 180 YEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHXXXXXXXXXXXXX 239
YEALRERT +G GPAQ H NTGVDPDAVAAIRRQRLSEIALWFCPH
Sbjct: 181 YEALRERTVNGDLGPAQDHPNTGVDPDAVAAIRRQRLSEIALWFCPHNSNNFNNNSNVDS 240
Query: 240 XXQVVSEHPLNIVIEDAGPAQNPATKWAVEXXXXXXXXXXXXXXXXXXXXPRVGKKTARG 299
Q+VSE PLN ++E+ P QN TKWAVE PRVGKKTA
Sbjct: 241 VSQLVSEQPLNFIVEEPEPVQNTRTKWAVECTGILLATGLLTITLAWLIAPRVGKKTAGS 300
Query: 300 GLHILLGGVCAXXXXXXXXXXXXXXIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT 357
GLHILLGGVCA I+YGPARYWAILF+FWFLVFGIWASRTHSAHTT
Sbjct: 301 GLHILLGGVCALTVVIFFRFFVLTRIRYGPARYWAILFVFWFLVFGIWASRTHSAHTT 358
>Medtr3g069760.1 | RING-variant domain protein | LC |
chr3:31246719-31244298 | 20130731
Length = 196
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 114 LELGLSHQD-------TLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIR 166
L + + +QD T +ELGC CK+D++ H CA +WF G+ CEICG IA+N
Sbjct: 77 LSMDMENQDDDQHESWTPIELGCSCKDDMSTAHKLCAEEWFRIKGNKTCEICGSIANN-- 134
Query: 167 ISDLNKVVSSLKEYEALRERTASGGPGPAQAHGNTGVDPDAVAAIR 212
++D+ KV + E E + P P TG+ P + ++R
Sbjct: 135 VADIVKV----EMKEEWHEANNTFRPPP------TGLSPAEIRSLR 170
>Medtr5g081560.1 | RING/FYVE/PHD zinc finger protein | HC |
chr5:34934468-34931762 | 20130731
Length = 211
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 76 EVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDL 135
E+ DG G+ D + V + + +C +++ +ELGC CKNDL
Sbjct: 65 ELDLDGGGVVSDVK--------VHLDKVERDCRICHLSMDMTNHESGIPMELGCFCKNDL 116
Query: 136 ALVHYACALKWFINHGSTICEICGHIASNI 165
A H CA WF G+ CEICG IA N+
Sbjct: 117 AAAHKHCAEAWFKIKGNKTCEICGSIAHNV 146
>Medtr3g069730.1 | RING/FYVE/PHD zinc finger protein | HC |
chr3:31222536-31219118 | 20130731
Length = 217
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
+ELGC CK+DLA H CA WF G+ CEICG IA N+
Sbjct: 114 IELGCSCKDDLAAAHKQCAEAWFKVKGNKTCEICGSIARNV 154
>Medtr2g016520.1 | RING/FYVE/PHD zinc finger protein | HC |
chr2:5072077-5075083 | 20130731
Length = 283
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L++LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 182 LIQLGCACKDELGIAHVHCAEVWFKLKGNRLCEICGETAKNV 223
>Medtr2g020520.1 | zinc finger protein | HC | chr2:6842371-6836281 |
20130731
Length = 424
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 126 ELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRE 185
++ C CK DL LVH C +KW G+ CEICG + N+ ++ L +V SS++ R
Sbjct: 230 KMECYCKGDLRLVHEECLIKWLNTKGTNKCEICGKVVQNLPVTLL-RVSSSVQR----RN 284
Query: 186 RTASGGPGPAQAHGN 200
R P Q H N
Sbjct: 285 R-------PLQDHQN 292
>Medtr2g020520.4 | zinc finger protein | HC | chr2:6841935-6836281 |
20130731
Length = 423
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 126 ELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRE 185
++ C CK DL LVH C +KW G+ CEICG + N+ ++ L +V SS++ R
Sbjct: 229 KMECYCKGDLRLVHEECLIKWLNTKGTNKCEICGKVVQNLPVTLL-RVSSSVQR----RN 283
Query: 186 RTASGGPGPAQAHGN 200
R P Q H N
Sbjct: 284 R-------PLQDHQN 291
>Medtr2g094130.2 | RING/U-box protein | HC | chr2:40144316-40148220
| 20130731
Length = 503
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+++ CCCK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 265 LKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLL 310
>Medtr2g094130.1 | RING/U-box protein | HC | chr2:40144316-40148220
| 20130731
Length = 498
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+++ CCCK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 265 LKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLL 310
>Medtr2g020520.2 | zinc finger protein | HC | chr2:6842446-6836281 |
20130731
Length = 315
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 126 ELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRE 185
++ C CK DL LVH C +KW G+ CEICG + N+ ++ L +V SS++ R
Sbjct: 121 KMECYCKGDLRLVHEECLIKWLNTKGTNKCEICGKVVQNLPVTLL-RVSSSVQR----RN 175
Query: 186 RTASGGPGPAQAHGN 200
R P Q H N
Sbjct: 176 R-------PLQDHQN 183
>Medtr2g020520.3 | zinc finger protein | HC | chr2:6842068-6836281 |
20130731
Length = 315
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Query: 126 ELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRE 185
++ C CK DL LVH C +KW G+ CEICG + N+ ++ L +V SS++ R
Sbjct: 121 KMECYCKGDLRLVHEECLIKWLNTKGTNKCEICGKVVQNLPVTLL-RVSSSVQR----RN 175
Query: 186 RTASGGPGPAQAHGN 200
R P Q H N
Sbjct: 176 R-------PLQDHQN 183
>Medtr8g086550.2 | RING/FYVE/PHD zinc finger protein | HC |
chr8:35906780-35909962 | 20130731
Length = 310
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L+ LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 209 LIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNV 250
>Medtr8g086550.1 | RING/FYVE/PHD zinc finger protein | HC |
chr8:35906799-35909962 | 20130731
Length = 310
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L+ LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 209 LIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNV 250
>Medtr4g086500.1 | RINGv domain protein | HC |
chr4:33910665-33912893 | 20130731
Length = 310
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
L+ LGC CK++L + H CA WF G+ +CEICG A N+
Sbjct: 209 LIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNV 250
>Medtr7g065920.1 | RING/FYVE/PHD zinc finger protein | HC |
chr7:23950286-23946340 | 20130731
Length = 235
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 29/57 (50%)
Query: 109 VCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNI 165
+C LE +ELGC CK DLA H CA WF G+ CEIC IA N+
Sbjct: 113 ICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSIARNV 169
>Medtr3g081490.4 | zinc finger protein | HC | chr3:36898911-36894526
| 20130731
Length = 380
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 66 IIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPD--GEVFVCKSDLELGLSHQDT 123
++ V+ ++ + +DG+ D+ + V+E S D E VC+ L DT
Sbjct: 198 LVRVISARPQPATTDGISTRSDSM----QEIVIEDASEDIPEEEAVCRICLVELAEGGDT 253
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
L + C CK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 254 L-RMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLL 299
>Medtr3g081490.2 | zinc finger protein | HC | chr3:36898911-36894532
| 20130731
Length = 387
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 66 IIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPD--GEVFVCKSDLELGLSHQDT 123
++ V+ ++ + +DG+ D+ + V+E S D E VC+ L DT
Sbjct: 198 LVRVISARPQPATTDGISTRSDSM----QEIVIEDASEDIPEEEAVCRICLVELAEGGDT 253
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
L + C CK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 254 L-RMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLL 299
>Medtr3g081490.3 | zinc finger protein | HC | chr3:36898911-36894532
| 20130731
Length = 387
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 66 IIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPD--GEVFVCKSDLELGLSHQDT 123
++ V+ ++ + +DG+ D+ + V+E S D E VC+ L DT
Sbjct: 198 LVRVISARPQPATTDGISTRSDSM----QEIVIEDASEDIPEEEAVCRICLVELAEGGDT 253
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
L + C CK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 254 L-RMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLL 299
>Medtr3g081490.1 | zinc finger protein | HC | chr3:36898911-36894526
| 20130731
Length = 476
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 66 IIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPD--GEVFVCKSDLELGLSHQDT 123
++ V+ ++ + +DG+ D+ + V+E S D E VC+ L DT
Sbjct: 198 LVRVISARPQPATTDGISTRSDSM----QEIVIEDASEDIPEEEAVCRICLVELAEGGDT 253
Query: 124 LVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
L + C CK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 254 L-RMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLL 299
>Medtr2g094130.3 | RING/U-box protein | HC | chr2:40144316-40148220
| 20130731
Length = 438
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+++ CCCK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 265 LKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLL 310
>Medtr2g094130.4 | RING/U-box protein | HC | chr2:40144316-40148220
| 20130731
Length = 443
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 125 VELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDL 170
+++ CCCK +LAL H CA+KWF G+ C++C N+ ++ L
Sbjct: 265 LKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLL 310