Miyakogusa Predicted Gene

Lj4g3v2826700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2826700.1 Non Characterized Hit- tr|I1KBM3|I1KBM3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.6614
PE=,84.65,0,Snf7,Snf7; seg,NULL; SNF7 - RELATED,NULL;
coiled-coil,NULL,CUFF.51739.1
         (215 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g096680.1 | vacuolar sorting-associated-like protein | HC ...   273   7e-74
Medtr3g096680.3 | vacuolar sorting-associated-like protein | HC ...   260   5e-70
Medtr3g096680.2 | vacuolar sorting-associated-like protein | HC ...   206   1e-53

>Medtr3g096680.1 | vacuolar sorting-associated-like protein | HC |
           chr3:44247076-44243872 | 20130731
          Length = 217

 Score =  273 bits (699), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 147/217 (67%), Positives = 161/217 (74%), Gaps = 2/217 (0%)

Query: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIRXXXXXXXXX 60
           MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIR         
Sbjct: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALL 60

Query: 61  XXXXXXXXXXXXXQVDAWLLNVEQQLADIELTSKQKAVFDSLKAGNDAMKAIQSEINIED 120
                        QVD WL+NVEQQLADIELTSKQKAVF+SLKAG+ A++AIQSEINIED
Sbjct: 61  ALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIED 120

Query: 121 VQKLMDDTAEAKAYQDEINAVLGEQLSAXXXXXXXXXXXXXXXXLTVQDLPEVPTSVSED 180
           VQKLMDDTAEAKAYQDEINA+LGEQLSA                  V+DLPE P++V + 
Sbjct: 121 VQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDK 180

Query: 181 INEKLDLPEVPIQAPGEKV--VEASSKRKVMEEPLPA 215
           ++EKLDLP+VP +AP       E S KRKVMEEPL A
Sbjct: 181 VDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA 217


>Medtr3g096680.3 | vacuolar sorting-associated-like protein | HC |
           chr3:44247076-44243872 | 20130731
          Length = 240

 Score =  260 bits (665), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 147/240 (61%), Positives = 161/240 (67%), Gaps = 25/240 (10%)

Query: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQK-----------------------LDA 37
           MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQK                       LDA
Sbjct: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKVTFFNTLNFISLIPFSLCTSNFLLDA 60

Query: 38  VIEAEKQAARDLIRXXXXXXXXXXXXXXXXXXXXXXQVDAWLLNVEQQLADIELTSKQKA 97
           VIEAEKQAARDLIR                      QVD WL+NVEQQLADIELTSKQKA
Sbjct: 61  VIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKA 120

Query: 98  VFDSLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINAVLGEQLSAXXXXXXXXX 157
           VF+SLKAG+ A++AIQSEINIEDVQKLMDDTAEAKAYQDEINA+LGEQLSA         
Sbjct: 121 VFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAE 180

Query: 158 XXXXXXXLTVQDLPEVPTSVSEDINEKLDLPEVPIQAPGEKV--VEASSKRKVMEEPLPA 215
                    V+DLPE P++V + ++EKLDLP+VP +AP       E S KRKVMEEPL A
Sbjct: 181 FENLETQFAVEDLPEAPSTVPDKVDEKLDLPDVPTKAPVTTTSDAEVSIKRKVMEEPLAA 240


>Medtr3g096680.2 | vacuolar sorting-associated-like protein | HC |
           chr3:44247076-44243872 | 20130731
          Length = 156

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 112/136 (82%)

Query: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIRXXXXXXXXX 60
           MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIR         
Sbjct: 1   MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALL 60

Query: 61  XXXXXXXXXXXXXQVDAWLLNVEQQLADIELTSKQKAVFDSLKAGNDAMKAIQSEINIED 120
                        QVD WL+NVEQQLADIELTSKQKAVF+SLKAG+ A++AIQSEINIED
Sbjct: 61  ALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIED 120

Query: 121 VQKLMDDTAEAKAYQD 136
           VQKLMDDTAEAKAYQD
Sbjct: 121 VQKLMDDTAEAKAYQD 136