Miyakogusa Predicted Gene

Lj4g3v2825690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2825690.2 tr|A9T6I8|A9T6I8_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_192109,35.2,7e-17,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.51729.2
         (187 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g096670.1 | F-box plant protein, putative | HC | chr3:4423...   210   8e-55
Medtr3g096670.2 | F-box plant protein, putative | HC | chr3:4423...   209   8e-55
Medtr8g094190.1 | F-box plant protein, putative | HC | chr8:3939...   150   1e-36
Medtr8g094150.1 | F-box plant-like protein | HC | chr8:39376619-...    71   6e-13

>Medtr3g096670.1 | F-box plant protein, putative | HC |
           chr3:44234632-44237480 | 20130731
          Length = 625

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 133/184 (72%), Gaps = 9/184 (4%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCRV+PQE+G LG+ DGPILW++VFEVI DFDGS +F LHGRE+G+ Y+   S + IDK 
Sbjct: 111 GCRVIPQELGPLGMEDGPILWASVFEVIADFDGSPMFFLHGREKGIDYIYPGSARCIDKF 170

Query: 71  CNVLLLEVEP---------LKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVP 121
           CN+LLLEVEP         L+  S V QSGLE  +KV RS  ++ RPQ  +GN++   V 
Sbjct: 171 CNILLLEVEPEQNKNVGSLLQSKSFVHQSGLELSRKVSRSNSDICRPQMVIGNNNEGNVT 230

Query: 122 FSKLTFTDRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQV 181
           FSKL F+DR  LL++TT QVRQ++P+  +GPLF R RDD  NFQKDLVL R+RR  L ++
Sbjct: 231 FSKLAFSDRRKLLEVTTGQVRQKIPDTVLGPLFPRLRDDEGNFQKDLVLLRERRSQLSRL 290

Query: 182 YRLG 185
           Y+LG
Sbjct: 291 YKLG 294


>Medtr3g096670.2 | F-box plant protein, putative | HC |
           chr3:44234632-44238356 | 20130731
          Length = 617

 Score =  209 bits (533), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 104/184 (56%), Positives = 133/184 (72%), Gaps = 9/184 (4%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
           GCRV+PQE+G LG+ DGPILW++VFEVI DFDGS +F LHGRE+G+ Y+   S + IDK 
Sbjct: 111 GCRVIPQELGPLGMEDGPILWASVFEVIADFDGSPMFFLHGREKGIDYIYPGSARCIDKF 170

Query: 71  CNVLLLEVEP---------LKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVP 121
           CN+LLLEVEP         L+  S V QSGLE  +KV RS  ++ RPQ  +GN++   V 
Sbjct: 171 CNILLLEVEPEQNKNVGSLLQSKSFVHQSGLELSRKVSRSNSDICRPQMVIGNNNEGNVT 230

Query: 122 FSKLTFTDRGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRRVALIQV 181
           FSKL F+DR  LL++TT QVRQ++P+  +GPLF R RDD  NFQKDLVL R+RR  L ++
Sbjct: 231 FSKLAFSDRRKLLEVTTGQVRQKIPDTVLGPLFPRLRDDEGNFQKDLVLLRERRSQLSRL 290

Query: 182 YRLG 185
           Y+LG
Sbjct: 291 YKLG 294


>Medtr8g094190.1 | F-box plant protein, putative | HC |
           chr8:39394266-39396423 | 20130731
          Length = 629

 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/181 (49%), Positives = 111/181 (61%), Gaps = 34/181 (18%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGR-EEGVHYVCLRSVKYIDK 69
            CRV+PQE+ SLGI D  ILWS VFE++ DFDGS +F LHGR EEG+  V   S+K +++
Sbjct: 118 ACRVIPQEVVSLGIKDCSILWSPVFEIVCDFDGSNMFFLHGREEEGIDCVYHGSLKCVNR 177

Query: 70  SCNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTD 129
            CN+LLLEVE                          SR Q    +++ + +PF KL F D
Sbjct: 178 FCNLLLLEVE--------------------------SRKQ----DNNEVMIPFRKLGFRD 207

Query: 130 RGMLLDITTIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRR---VALIQVYRLGG 186
           R  LL+ITT QVR EVPNM  G LF RSRDD  NFQKDLVL ++RR   V + Q+Y+LG 
Sbjct: 208 RKKLLEITTSQVRIEVPNMGTGRLFPRSRDDSVNFQKDLVLLKERRAFLVQMTQMYKLGC 267

Query: 187 I 187
           I
Sbjct: 268 I 268


>Medtr8g094150.1 | F-box plant-like protein | HC |
           chr8:39376619-39378987 | 20130731
          Length = 566

 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 81/182 (44%), Gaps = 68/182 (37%)

Query: 11  GCRVVPQEIGSLGIHDGPILWSAVFEVIGDFDGSAVFVLHGREEGVHYVCLRSVKYIDKS 70
            CR++PQE+ SLGI +  ILWS VFE++         V HG           S+K +++ 
Sbjct: 65  ACRIIPQEVVSLGIQNCSILWSPVFEIV-------YCVYHG-----------SLKCVNRF 106

Query: 71  CNVLLLEVEPLKGSSLVCQSGLEFLKKVFRSYIELSRPQGAVGNDDGIQVPFSKLTFTDR 130
           CN+LLL VE                          SR Q     D    VPFSKL F DR
Sbjct: 107 CNLLLLGVE--------------------------SRKQ-----DSEAIVPFSKLGFRDR 135

Query: 131 GMLLDIT--TIQVRQEVPNMAMGPLFTRSRDDYDNFQKDLVLSRDRR---VALIQVYRLG 185
             LL++T  T QVR    N               NFQKDLV+ ++RR     + Q+Y+L 
Sbjct: 136 KKLLELTASTNQVRLRFLN--------------PNFQKDLVMLKERRGFLSRMTQMYKLC 181

Query: 186 GI 187
            I
Sbjct: 182 SI 183