Miyakogusa Predicted Gene

Lj4g3v2821280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v2821280.1 Non Characterized Hit- tr|I3SMC1|I3SMC1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.55,0,Galactose-binding domain-like,Galactose-binding
domain-like; no description,PITH domain; PITH,PITH d,CUFF.51721.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g018310.1 | thioredoxin family Trp26 protein | HC | chr2:5...   393   e-110
Medtr1g080960.1 | PITH domain plant protein | HC | chr1:36042153...    53   2e-07

>Medtr2g018310.1 | thioredoxin family Trp26 protein | HC |
           chr2:5760265-5755575 | 20130731
          Length = 204

 Score =  393 bits (1009), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/204 (91%), Positives = 196/204 (96%)

Query: 1   MSCLHDHSCEDHDCSTDWSLYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLES 60
           M+C+HDHSCEDHDCS+DWSLYKHIDL KVSALNEATPGSVKSVFKAWE RLN+SG HLES
Sbjct: 1   MACVHDHSCEDHDCSSDWSLYKHIDLEKVSALNEATPGSVKSVFKAWEHRLNTSGEHLES 60

Query: 61  NEGDPELLVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD 120
           NEGDPEL+VFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD
Sbjct: 61  NEGDPELIVFIPFTSDVKIKSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWD 120

Query: 121 LAENMQGVLEYQTRYSIFQSVGHITLHFPESFGGDTTKIHYIGFKGEATQLKRDVVATIV 180
           LAEN+QGVLEYQTRYS FQ VG+ITLHFP++FGGDTTKIHYIG KGEATQLKRDVVATIV
Sbjct: 121 LAENLQGVLEYQTRYSKFQGVGNITLHFPDNFGGDTTKIHYIGLKGEATQLKRDVVATIV 180

Query: 181 YEITPNPSDHKTHAESGGGLSHVG 204
           YE+ PNPSDHKT AESGGGLSHVG
Sbjct: 181 YELMPNPSDHKTRAESGGGLSHVG 204


>Medtr1g080960.1 | PITH domain plant protein | HC |
           chr1:36042153-36038768 | 20130731
          Length = 177

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 16/161 (9%)

Query: 20  LYKHIDLSKVSALNEATPGSVKSVFKAWEDRLNSSGGHLESNEGDPELLVFIPFTSDVKI 79
           L   ID + V  LN+ T  S+ +  K  +      G HLES + D +LL++IPFT  +K+
Sbjct: 17  LLDFIDWTGVECLNQKTNNSLPNAIK--QGYREDDGLHLES-DADEQLLLYIPFTQVIKL 73

Query: 80  KSISIVGGADGTSPSKMRAFINRDGIDFSDAQSMQAIQEWDLA-ENMQG--VLEYQTRYS 136
            S++  G  D   P  ++ F N++ + FS+           L+ EN++G  VL    +Y 
Sbjct: 74  YSVAFKGPED-EGPKTVKLFSNKEHMGFSNVNDYPPSDTLVLSPENLKGKPVL---LKYV 129

Query: 137 IFQSVGHITLHFPESFGGDT-----TKIHYIGFKGEATQLK 172
            FQ+V  +T+ F E    D+      KI  IG   E T +K
Sbjct: 130 KFQNVRSLTI-FIEDNQTDSEITKVQKIMLIGSTVETTDMK 169